Wall clock time and date at job start Tue Mar 31 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.50700 * 109.47346 * 120.00249 * 2 1 3 5 5 H 1.07996 * 120.00450 * 120.00010 * 4 2 1 6 6 C 1.37880 * 119.99855 * 300.00409 * 4 2 1 7 7 N 1.31514 * 120.00247 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99852 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47458 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.46835 * 210.00216 * 8 6 4 11 11 H 1.48499 * 109.47044 * 329.99990 * 8 6 4 12 12 N 1.46504 * 109.47097 * 240.00057 * 2 1 3 13 13 C 1.34777 * 119.99858 * 85.00328 * 12 2 1 14 14 O 1.21523 * 119.99904 * 359.97438 * 13 12 2 15 15 C 1.48132 * 120.00165 * 180.27147 * 13 12 2 16 16 C 1.39872 * 121.09807 * 359.44254 * 15 13 12 17 17 N 1.31912 * 119.87742 * 179.75523 * 16 15 13 18 18 N 1.28273 * 122.46062 * 0.54273 * 17 16 15 19 19 C 1.32674 * 122.37177 * 359.71460 * 18 17 16 20 20 C 1.48348 * 120.12878 * 180.02562 * 19 18 17 21 21 C 1.39357 * 120.12304 * 179.70876 * 20 19 18 22 22 C 1.38017 * 119.87184 * 179.72367 * 21 20 19 23 23 C 1.38325 * 120.12400 * 0.54928 * 22 21 20 24 24 C 1.38323 * 120.24529 * 359.72392 * 23 22 21 25 25 C 1.38008 * 120.12432 * 0.02562 * 24 23 22 26 26 C 1.39673 * 119.74782 * 0.02562 * 19 18 17 27 27 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47598 * 299.99864 * 1 2 3 29 29 H 1.09002 * 109.46733 * 60.00299 * 1 2 3 30 30 H 0.97003 * 120.00014 * 179.97438 * 7 6 4 31 31 H 0.96991 * 120.00424 * 264.99426 * 12 2 1 32 32 H 1.08004 * 120.06544 * 0.02562 * 16 15 13 33 33 H 1.07996 * 120.06338 * 359.97438 * 21 20 19 34 34 H 1.07999 * 119.93731 * 180.29738 * 22 21 20 35 35 H 1.07998 * 119.87216 * 179.74432 * 23 22 21 36 36 H 1.08006 * 119.93458 * 180.02562 * 24 23 22 37 37 H 1.08007 * 120.05924 * 180.02562 * 25 24 23 38 38 H 1.08006 * 121.12817 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8577 1.1608 -2.4117 15 6 2.6352 -0.7179 -3.5682 16 6 2.9798 -2.0729 -3.5300 17 7 3.4073 -2.6733 -4.6241 18 7 3.5338 -2.0579 -5.7424 19 6 3.2387 -0.7720 -5.8830 20 6 3.4034 -0.1099 -7.2003 21 6 3.0877 1.2392 -7.3493 22 6 3.2483 1.8514 -8.5758 23 6 3.7109 1.1256 -9.6587 24 6 4.0204 -0.2152 -9.5178 25 6 3.8685 -0.8363 -8.2948 26 6 2.7724 -0.0440 -4.7860 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9031 -0.5281 4.4376 31 1 2.2491 -1.6317 -1.1527 32 1 2.8921 -2.6278 -2.6076 33 1 2.7218 1.8056 -6.5057 34 1 3.0084 2.8980 -8.6913 35 1 3.8311 1.6077 -10.6176 36 1 4.3816 -0.7770 -10.3666 37 1 4.1110 -1.8832 -8.1859 38 1 2.5259 1.0038 -4.8752 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353778674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:39 Heat of formation + Delta-G solvation = 31.387996 kcal Electronic energy + Delta-G solvation = -22244.532705 eV Core-core repulsion = 18858.738876 eV Total energy + Delta-G solvation = -3385.793829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.44615 -40.65967 -39.83885 -37.02745 -34.95638 -34.75531 -34.18301 -31.99327 -31.62321 -30.89931 -27.29023 -26.77911 -26.01332 -23.89137 -23.05802 -22.59720 -21.53145 -19.85846 -18.84043 -18.47271 -17.74666 -17.62943 -17.17296 -16.55287 -16.50079 -16.08859 -15.72640 -15.50411 -15.17367 -14.93724 -14.72249 -14.61742 -14.16266 -14.09876 -13.85498 -13.72552 -13.28268 -12.79872 -12.58639 -12.17421 -12.12449 -11.99168 -11.73687 -11.64555 -11.45586 -11.43837 -11.30713 -10.89358 -10.78882 -10.07142 -9.90324 -9.54854 -8.38632 -6.45785 -0.96103 -0.65280 0.45910 0.55594 1.28739 1.37047 1.45485 1.64198 1.98327 2.25881 2.40961 2.65237 2.93846 2.97651 3.09294 3.21621 3.42815 3.57347 3.87434 4.01695 4.07653 4.29063 4.33715 4.42866 4.50095 4.53766 4.58413 4.65941 4.71464 4.78171 4.95575 4.99820 5.13078 5.25747 5.35542 5.48948 5.50345 5.52969 5.57068 6.00402 6.06602 6.52872 6.63751 7.03760 7.23730 7.39190 8.76289 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.031070 B = 0.003031 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.981592 B = 9236.101625 C = 9924.807133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 H 0.032 0.968 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.258 1.258 12 N -0.684 5.684 13 C 0.556 3.444 14 O -0.569 6.569 15 C -0.123 4.123 16 C 0.070 3.930 17 N -0.251 5.251 18 N -0.241 5.241 19 C 0.112 3.888 20 C -0.075 4.075 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.099 4.099 24 C -0.127 4.127 25 C -0.089 4.089 26 C -0.053 4.053 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.409 0.591 32 H 0.200 0.800 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.131 0.869 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 3.028 -25.505 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.138 3.862 3 H 0.050 0.950 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.570 5.570 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.222 1.222 11 H -0.182 1.182 12 N -0.333 5.333 13 C 0.341 3.659 14 O -0.449 6.449 15 C -0.137 4.137 16 C -0.095 4.095 17 N -0.091 5.091 18 N -0.084 5.084 19 C -0.031 4.031 20 C -0.077 4.077 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.108 4.108 26 C -0.083 4.083 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.217 0.783 33 H 0.153 0.847 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.149 0.851 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.424 2.385 -25.963 26.111 hybrid contribution -0.754 1.214 1.729 2.243 sum 0.670 3.599 -24.234 24.509 Atomic orbital electron populations 1.22375 0.97370 1.02063 0.99836 1.18898 0.91499 0.93456 0.82382 0.95038 1.21217 1.32658 1.13830 0.89749 0.92188 1.25551 0.96788 0.99350 0.95312 1.69971 1.46496 1.41864 0.98717 0.86025 0.79786 0.80340 0.77382 1.18491 1.22176 1.18231 1.45959 1.64012 1.14543 1.08821 1.18152 0.78249 0.86281 0.83243 1.90733 1.52244 1.16555 1.85369 1.21143 1.01514 0.95830 0.95164 1.24894 0.92476 0.91889 1.00194 1.73013 1.10501 1.30233 0.95306 1.72950 1.11143 1.07690 1.16644 1.21609 0.95070 0.91639 0.94804 1.18364 1.04935 0.94347 0.90062 1.21491 0.98526 0.92886 0.99443 1.21440 0.99385 1.01485 0.91968 1.21746 0.95949 0.94112 0.99946 1.21476 1.00046 0.95685 0.97296 1.21443 0.96570 1.00554 0.92251 1.22758 0.92282 1.02915 0.90318 0.91399 0.93758 0.93177 0.91997 0.75354 0.78296 0.84666 0.83010 0.82741 0.83134 0.85102 0.80780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.46 8.96 71.98 0.65 -5.82 16 2 C 0.24 10.81 2.15 44.24 0.10 10.90 16 3 H 0.03 1.56 6.63 -2.39 -0.02 1.54 16 4 C -0.54 -27.95 9.31 25.60 0.24 -27.72 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.64 5.45 84.66 0.46 2.11 16 7 N -0.93 -54.49 13.96 21.45 0.30 -54.19 16 8 Si 0.94 42.92 24.37 68.60 1.67 44.59 16 9 H -0.26 -11.14 6.87 99.48 0.68 -10.46 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.26 -11.56 6.53 99.48 0.65 -10.91 16 12 N -0.68 -25.04 5.03 -448.69 -2.26 -27.30 16 13 C 0.56 19.53 7.76 86.87 0.67 20.20 16 14 O -0.57 -23.39 16.15 -3.79 -0.06 -23.45 16 15 C -0.12 -3.51 5.91 -19.86 -0.12 -3.63 16 16 C 0.07 1.84 10.84 85.08 0.92 2.76 16 17 N -0.25 -7.20 11.48 -56.44 -0.65 -7.84 16 18 N -0.24 -6.84 10.60 -48.42 -0.51 -7.35 16 19 C 0.11 2.86 6.81 42.06 0.29 3.14 16 20 C -0.08 -1.60 5.88 -20.05 -0.12 -1.72 16 21 C -0.10 -1.81 9.43 22.49 0.21 -1.60 16 22 C -0.13 -1.62 10.03 22.24 0.22 -1.39 16 23 C -0.10 -1.12 10.04 22.31 0.22 -0.89 16 24 C -0.13 -1.70 10.03 22.24 0.22 -1.48 16 25 C -0.09 -1.68 9.58 22.48 0.22 -1.46 16 26 C -0.05 -1.38 9.10 23.01 0.21 -1.17 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.41 12.79 6.69 -92.72 -0.62 12.17 16 32 H 0.20 4.17 6.52 -2.91 -0.02 4.15 16 33 H 0.14 2.09 6.24 -2.91 -0.02 2.07 16 34 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.13 2.53 7.56 -2.91 -0.02 2.51 16 38 H 0.17 4.02 6.03 -2.91 -0.02 4.00 16 Total: -1.00 -67.40 323.10 3.30 -64.10 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.42 Total: 19.20 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 4.39 Total: -7.75 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -3.12 Total: -96.69 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.67 Total: 44.59 kcal Total: -67.40 3.30 -64.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353778674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.484 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds