Wall clock time and date at job start Tue Mar 31 2020 07:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47102 * 2 1 4 4 C 1.34775 * 120.00245 * 274.94952 * 3 2 1 5 5 O 1.21290 * 119.99742 * 5.35247 * 4 3 2 6 6 C 1.50697 * 120.00447 * 185.35635 * 4 3 2 7 7 H 1.08999 * 109.46767 * 314.83126 * 6 4 3 8 8 N 1.46900 * 109.47401 * 194.83164 * 6 4 3 9 9 C 1.53005 * 109.47092 * 74.82669 * 6 4 3 10 10 C 1.53002 * 109.46776 * 185.78241 * 9 6 4 11 11 C 1.50709 * 109.46545 * 180.02562 * 10 9 6 12 12 H 1.07995 * 119.99927 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99566 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00188 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46823 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.46964 * 119.99861 * 15 13 11 18 18 H 1.48502 * 109.47027 * 239.99855 * 15 13 11 19 19 C 1.38997 * 119.99994 * 94.94901 * 3 2 1 20 20 N 1.29628 * 124.94429 * 353.98171 * 19 3 2 21 21 C 1.31992 * 116.91785 * 179.97438 * 20 19 3 22 22 C 1.50697 * 122.71435 * 179.97438 * 21 20 19 23 23 C 1.33442 * 114.56905 * 0.23105 * 21 20 19 24 24 S 1.70972 * 124.94675 * 173.94162 * 19 3 2 25 25 H 1.09002 * 109.47275 * 184.99950 * 1 2 3 26 26 H 1.09005 * 109.46791 * 305.00344 * 1 2 3 27 27 H 1.09000 * 109.47004 * 65.00069 * 1 2 3 28 28 H 1.08999 * 109.46560 * 240.00048 * 2 1 3 29 29 H 1.09000 * 109.46981 * 120.00062 * 2 1 3 30 30 H 1.00903 * 110.99616 * 299.99663 * 8 6 4 31 31 H 1.00896 * 111.00050 * 63.95385 * 8 6 4 32 32 H 1.08999 * 109.47081 * 305.78495 * 9 6 4 33 33 H 1.08995 * 109.46973 * 65.78583 * 9 6 4 34 34 H 1.08992 * 109.47188 * 299.99948 * 10 9 6 35 35 H 1.09002 * 109.47233 * 60.00771 * 10 9 6 36 36 H 0.97006 * 120.00207 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.47034 * 90.00418 * 22 21 20 38 38 H 1.09006 * 109.47274 * 329.99944 * 22 21 20 39 39 H 1.09007 * 109.47287 * 210.00077 * 22 21 20 40 40 H 1.07997 * 125.97255 * 179.76091 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1481 2.0502 -1.1628 5 8 1.7700 1.5448 -2.1986 6 6 2.7629 3.4259 -1.1762 7 1 2.3422 4.0198 -0.3648 8 7 2.4755 4.0783 -2.4606 9 6 4.2773 3.3096 -0.9909 10 6 4.8839 4.7081 -0.8600 11 6 6.3756 4.5935 -0.6781 12 1 6.8438 3.6205 -0.6574 13 6 7.1422 5.7307 -0.5370 14 7 6.5717 6.9155 -0.5607 15 14 8.9912 5.5888 -0.3122 16 1 9.3822 4.1562 -0.3202 17 1 9.6804 6.2967 -1.4208 18 1 9.3807 6.2005 0.9837 19 6 2.3479 2.0018 1.1993 20 7 2.1573 1.4923 2.3759 21 6 2.5313 2.2216 3.4106 22 6 2.3699 1.7572 4.8351 23 6 3.0588 3.4055 3.0933 24 16 3.0647 3.5479 1.3373 25 1 -0.3634 -1.0238 0.0896 26 1 -0.3633 0.5895 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8556 3.5466 -3.2293 31 1 1.4841 4.2252 -2.5777 32 1 4.4899 2.7354 -0.0891 33 1 4.7112 2.8046 -1.8538 34 1 4.6713 5.2822 -1.7618 35 1 4.4500 5.2131 0.0030 36 1 7.1111 7.7156 -0.4618 37 1 3.2640 1.2157 5.1442 38 1 1.5036 1.0995 4.9070 39 1 2.2255 2.6206 5.4846 40 1 3.4206 4.1463 3.7909 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:55 Heat of formation + Delta-G solvation = 15.055483 kcal Electronic energy + Delta-G solvation = -22614.314698 eV Core-core repulsion = 19363.256590 eV Total energy + Delta-G solvation = -3251.058108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79531 -39.42205 -36.19292 -35.76535 -32.96569 -31.80057 -30.73803 -30.30284 -27.38450 -26.82764 -24.53097 -24.49198 -22.54564 -20.58996 -20.17591 -19.51180 -18.07841 -16.66762 -16.50630 -16.34768 -15.92258 -15.53108 -14.85611 -14.58653 -14.40420 -14.28628 -13.99764 -13.44265 -13.06752 -12.91527 -12.74316 -12.46560 -12.39597 -12.23352 -12.10311 -11.83117 -11.14683 -11.02792 -10.98009 -10.77214 -10.48070 -10.24492 -10.22591 -10.14891 -9.55574 -9.42780 -9.07747 -8.68451 -8.57429 -8.32779 -7.84428 -6.01621 -4.03564 0.91347 1.28943 2.04148 2.31851 2.64882 3.08642 3.29884 3.38134 3.41758 4.13545 4.44394 4.56876 4.74149 5.01910 5.08032 5.15085 5.28198 5.33199 5.35008 5.38295 5.47796 5.62271 5.63107 5.76305 5.80145 5.83314 6.06882 6.13568 6.17517 6.41057 6.47307 6.79230 6.90176 7.19936 7.57258 7.63970 7.76171 7.82810 7.95364 8.00883 8.37576 9.02649 9.59882 11.09061 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.005674 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.138264 B = 4934.037856 C = 6203.048921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.512 5.512 4 C 0.483 3.517 5 O -0.516 6.516 6 C 0.060 3.940 7 H 0.110 0.890 8 N -0.795 5.795 9 C -0.111 4.111 10 C 0.037 3.963 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.223 3.777 20 N -0.509 5.509 21 C 0.078 3.922 22 C -0.074 4.074 23 C -0.327 4.327 24 S 0.264 5.736 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.352 0.648 31 H 0.339 0.661 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -9.395 5.936 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.241 5.241 4 C 0.270 3.730 5 O -0.389 6.389 6 C -0.058 4.058 7 H 0.127 0.873 8 N -0.324 5.324 9 C -0.150 4.150 10 C 0.000 4.000 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.142 4.142 20 N -0.232 5.232 21 C -0.054 4.054 22 C -0.134 4.134 23 C -0.466 4.466 24 S 0.520 5.480 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.929 -8.645 4.897 14.770 hybrid contribution 0.405 -1.262 0.926 1.617 sum -10.524 -9.907 5.823 15.582 Atomic orbital electron populations 1.22046 0.95108 1.02427 1.02438 1.21629 0.95199 0.80491 1.03911 1.45223 1.61381 1.14593 1.02922 1.22975 0.77974 0.89904 0.82175 1.90684 1.48304 1.69308 1.30651 1.22357 1.00302 0.87506 0.95681 0.87321 1.58951 1.19532 1.51709 1.02197 1.22028 0.87631 1.04244 1.01099 1.19078 0.94509 0.88314 0.98136 1.21233 0.92426 0.92524 1.49757 0.92770 1.24954 0.98319 0.95414 0.95386 1.69970 1.35363 0.97363 1.50257 0.86616 0.86016 0.78149 0.77722 1.19796 1.20985 1.21044 1.23811 1.02489 0.98456 0.89444 1.66016 1.24760 1.36103 0.96348 1.19727 0.99850 0.90806 0.94990 1.20300 1.02652 1.01538 0.88879 1.27593 1.12222 1.03388 1.03405 1.86607 1.52695 1.11146 0.97545 0.91257 0.92169 0.92270 0.89665 0.88839 0.83286 0.84820 0.91678 0.91622 0.94178 0.96215 0.93036 0.90998 0.91146 0.90927 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.20 37.16 0.38 -1.49 16 2 C 0.11 1.46 5.89 -4.04 -0.02 1.44 16 3 N -0.51 -7.86 2.68 -117.39 -0.32 -8.18 16 4 C 0.48 7.88 6.88 -10.99 -0.08 7.81 16 5 O -0.52 -9.01 15.94 5.55 0.09 -8.92 16 6 C 0.06 1.00 2.22 -68.86 -0.15 0.84 16 7 H 0.11 1.80 4.73 -21.19 -0.10 1.70 16 8 N -0.80 -12.57 8.42 -5.65 -0.05 -12.62 16 9 C -0.11 -2.16 3.73 -26.73 -0.10 -2.26 16 10 C 0.04 0.88 4.60 -27.88 -0.13 0.76 16 11 C -0.52 -13.98 9.11 -34.44 -0.31 -14.29 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.22 3.55 7.31 -87.35 -0.64 2.91 16 20 N -0.51 -7.91 9.78 -11.28 -0.11 -8.02 16 21 C 0.08 1.12 6.74 -84.20 -0.57 0.55 16 22 C -0.07 -0.78 10.31 36.00 0.37 -0.40 16 23 C -0.33 -4.75 11.11 29.06 0.32 -4.43 16 24 S 0.26 4.27 13.05 -107.50 -1.40 2.87 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.10 7.66 -51.93 -0.40 0.71 16 29 H 0.09 1.19 7.56 -51.93 -0.39 0.79 16 30 H 0.35 5.47 8.62 -39.29 -0.34 5.13 16 31 H 0.34 4.60 9.06 -39.29 -0.36 4.25 16 32 H 0.07 1.26 5.63 -34.43 -0.19 1.07 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 1.04 7.78 -51.93 -0.40 0.64 16 35 H 0.02 0.48 6.66 -51.93 -0.35 0.14 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -30.38 336.34 -7.48 -37.86 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.45 Total: 7.80 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.02 Total: -7.00 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.26 Total: -53.73 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.40 Total: 2.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.38 -7.48 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.916 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds