Wall clock time and date at job start Tue Mar 31 2020 07:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47124 * 2 1 4 4 C 1.46507 * 120.00101 * 264.57557 * 3 2 1 5 5 C 1.50702 * 109.46566 * 273.65860 * 4 3 2 6 6 H 1.07996 * 120.00520 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99740 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00226 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99991 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47045 * 89.99543 * 9 7 5 11 11 H 1.48493 * 109.47079 * 209.99783 * 9 7 5 12 12 H 1.48499 * 109.47106 * 330.00493 * 9 7 5 13 13 C 1.34770 * 120.00101 * 84.56907 * 3 2 1 14 14 O 1.21280 * 120.00228 * 5.85681 * 13 3 2 15 15 C 1.50700 * 120.00369 * 185.85666 * 13 3 2 16 16 H 1.09004 * 109.47001 * 35.41822 * 15 13 3 17 17 C 1.53004 * 109.47282 * 275.41727 * 15 13 3 18 18 C 1.50702 * 109.47538 * 155.41582 * 15 13 3 19 19 C 1.38256 * 119.96153 * 59.97658 * 18 15 13 20 20 C 1.38215 * 120.06818 * 180.02562 * 19 18 15 21 21 C 1.38413 * 119.99916 * 359.97350 * 20 19 18 22 22 F 1.35107 * 120.03310 * 179.97438 * 21 20 19 23 23 C 1.38653 * 119.92850 * 359.75332 * 21 20 19 24 24 F 1.35103 * 120.03054 * 180.27332 * 23 21 20 25 25 C 1.38209 * 119.96365 * 240.00348 * 18 15 13 26 26 H 1.09000 * 109.46923 * 304.64816 * 1 2 3 27 27 H 1.08993 * 109.47259 * 64.65395 * 1 2 3 28 28 H 1.09006 * 109.46720 * 184.64977 * 1 2 3 29 29 H 1.08999 * 109.47214 * 240.00505 * 2 1 3 30 30 H 1.08993 * 109.47464 * 120.00073 * 2 1 3 31 31 H 1.08996 * 109.46752 * 33.65861 * 4 3 2 32 32 H 1.09000 * 109.47264 * 153.66087 * 4 3 2 33 33 H 0.97001 * 120.00016 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47042 * 173.51452 * 17 15 13 35 35 H 1.09000 * 109.46638 * 293.51299 * 17 15 13 36 36 H 1.08995 * 109.46547 * 53.51255 * 17 15 13 37 37 H 1.07994 * 119.96570 * 0.02630 * 19 18 15 38 38 H 1.07999 * 120.00150 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00488 * 359.95359 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3756 2.0319 -1.2631 5 6 3.8069 1.7090 -1.6071 6 1 4.3919 1.0822 -0.9505 7 6 4.3694 2.2137 -2.7603 8 7 5.6185 1.9324 -3.0604 9 14 3.3572 3.2973 -3.8965 10 1 3.5133 4.7183 -3.4942 11 1 3.8274 3.1241 -5.2944 12 1 1.9263 2.9111 -3.8040 13 6 2.1388 2.0534 1.1619 14 8 1.9454 1.4837 2.2149 15 6 2.5139 3.5129 1.1527 16 1 2.0619 3.9988 0.2880 17 6 4.0360 3.6479 1.0759 18 6 2.0146 4.1679 2.4148 19 6 2.4526 3.7174 3.6464 20 6 1.9957 4.3161 4.8053 21 6 1.0993 5.3683 4.7337 22 9 0.6518 5.9537 5.8661 23 6 0.6645 5.8238 3.4984 24 9 -0.2063 6.8542 3.4259 25 6 1.1191 5.2179 2.3399 26 1 -0.3633 0.5843 0.8454 27 1 -0.3633 0.4399 -0.9287 28 1 -0.3633 -1.0244 0.0833 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7208 1.6704 -2.0559 32 1 2.2611 3.1111 -1.1610 33 1 6.0142 2.2872 -3.8719 34 1 4.3019 4.6978 0.9533 35 1 4.4815 3.2651 1.9941 36 1 4.4088 3.0770 0.2256 37 1 3.1524 2.8968 3.7029 38 1 2.3382 3.9631 5.7668 39 1 0.7780 5.5692 1.3773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439136021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:33 Heat of formation + Delta-G solvation = -119.915280 kcal Electronic energy + Delta-G solvation = -24326.929143 eV Core-core repulsion = 20483.885126 eV Total energy + Delta-G solvation = -3843.044018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.51643 -49.59830 -41.44065 -39.67271 -36.93626 -35.17804 -34.52146 -32.11832 -31.86623 -29.96709 -29.40238 -25.92704 -24.47048 -24.33721 -24.22579 -22.37916 -19.86293 -19.04507 -18.88122 -18.45894 -18.04741 -17.57046 -17.34423 -16.93478 -16.34420 -16.02720 -15.83909 -15.60935 -15.43578 -15.04485 -14.87632 -14.69379 -14.36734 -14.04951 -13.97988 -13.70103 -13.27481 -13.19339 -13.08682 -12.95279 -12.59162 -12.55853 -12.43435 -12.34365 -12.01580 -11.97481 -11.79096 -11.59263 -10.74147 -10.58859 -10.03699 -9.66023 -9.39854 -8.24199 -6.29673 -0.14629 0.01044 1.43898 1.46934 1.54483 1.73382 2.16061 2.38925 2.48020 2.75502 3.09743 3.24601 3.45144 3.59967 3.74688 4.00771 4.12330 4.14807 4.24430 4.37302 4.42085 4.54966 4.66343 4.75364 4.78806 4.83315 4.88865 4.95129 4.99155 4.99439 5.05114 5.07714 5.30966 5.41526 5.48804 5.54031 5.72086 5.75955 6.23458 6.65456 6.75908 7.26750 7.38241 8.91462 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.004567 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.069260 B = 6129.334643 C = 6692.698083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.594 5.594 4 C 0.211 3.789 5 C -0.529 4.529 6 H 0.034 0.966 7 C 0.024 3.976 8 N -0.941 5.941 9 Si 0.931 3.069 10 H -0.259 1.259 11 H -0.292 1.292 12 H -0.239 1.239 13 C 0.520 3.480 14 O -0.580 6.580 15 C -0.064 4.064 16 H 0.115 0.885 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.064 4.064 20 C -0.121 4.121 21 C 0.054 3.946 22 F -0.137 7.137 23 C 0.052 3.948 24 F -0.137 7.137 25 C -0.115 4.115 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 5.716 8.810 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.324 5.324 4 C 0.089 3.911 5 C -0.567 4.567 6 H 0.052 0.948 7 C -0.175 4.175 8 N -0.580 5.580 9 Si 0.754 3.246 10 H -0.184 1.184 11 H -0.218 1.218 12 H -0.162 1.162 13 C 0.309 3.691 14 O -0.461 6.461 15 C -0.085 4.085 16 H 0.133 0.867 17 C -0.202 4.202 18 C -0.054 4.054 19 C -0.083 4.083 20 C -0.139 4.139 21 C 0.034 3.966 22 F -0.116 7.116 23 C 0.032 3.968 24 F -0.115 7.115 25 C -0.134 4.134 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.186 0.814 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.624 5.486 9.239 14.425 hybrid contribution 0.004 0.451 -0.601 0.752 sum -9.619 5.938 8.638 14.227 Atomic orbital electron populations 1.22016 0.94388 1.02940 1.01630 1.21393 0.95124 0.82507 1.02308 1.47991 1.62958 1.14122 1.07318 1.19766 0.94601 0.94474 0.82241 1.21389 0.96634 1.31525 1.07163 0.94774 1.25680 0.95574 0.97324 0.98933 1.70044 1.14929 1.46589 1.26487 0.85965 0.80663 0.80048 0.77953 1.18358 1.21776 1.16168 1.20591 0.75930 0.89475 0.83139 1.90585 1.53398 1.70757 1.31359 1.20234 0.99462 0.91985 0.96820 0.86684 1.21868 0.91011 1.03831 1.03465 1.19446 0.96168 0.95088 0.94737 1.21093 0.98670 0.97819 0.90680 1.21250 0.96764 0.94541 1.01395 1.17844 1.00627 0.97372 0.80785 1.91495 1.88078 1.83254 1.48741 1.17656 0.95364 0.90239 0.93549 1.91496 1.66959 1.55975 1.97106 1.21089 0.97762 0.96377 0.98149 0.93767 0.92056 0.89861 0.90381 0.91979 0.93875 0.92952 0.92419 0.90109 0.92360 0.90847 0.84258 0.81435 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 10.20 71.98 0.73 -3.33 16 2 C 0.11 3.64 6.14 86.38 0.53 4.17 16 3 N -0.59 -21.95 2.47 -826.15 -2.04 -23.99 16 4 C 0.21 8.23 3.92 85.63 0.34 8.57 16 5 C -0.53 -25.83 7.80 25.60 0.20 -25.63 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.02 1.22 5.47 84.65 0.46 1.68 16 8 N -0.94 -53.07 13.96 21.45 0.30 -52.78 16 9 Si 0.93 37.23 27.47 68.60 1.88 39.11 16 10 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.24 -8.50 6.54 99.48 0.65 -7.85 16 13 C 0.52 18.81 6.72 87.66 0.59 19.40 16 14 O -0.58 -22.81 14.19 -3.03 -0.04 -22.85 16 15 C -0.06 -1.95 2.12 -12.28 -0.03 -1.98 16 16 H 0.12 3.18 5.99 -2.39 -0.01 3.16 16 17 C -0.14 -4.59 9.03 71.98 0.65 -3.94 16 18 C -0.05 -1.46 4.64 -19.87 -0.09 -1.55 16 19 C -0.06 -1.70 7.80 22.27 0.17 -1.53 16 20 C -0.12 -2.81 10.02 22.31 0.22 -2.58 16 21 C 0.05 1.37 7.31 22.41 0.16 1.53 16 22 F -0.14 -3.58 17.18 44.97 0.77 -2.81 16 23 C 0.05 1.34 7.31 22.41 0.16 1.51 16 24 F -0.14 -3.65 17.18 44.97 0.77 -2.88 16 25 C -0.12 -2.82 9.65 22.30 0.22 -2.60 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.08 2.62 8.03 -2.39 -0.02 2.60 16 30 H 0.06 2.17 7.51 -2.39 -0.02 2.15 16 31 H 0.04 1.63 7.15 -2.39 -0.02 1.61 16 32 H 0.05 1.86 5.13 -2.39 -0.01 1.85 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 1.77 7.18 -2.39 -0.02 1.75 16 36 H 0.07 2.91 5.55 -2.39 -0.01 2.90 16 37 H 0.14 3.85 6.86 -2.91 -0.02 3.83 16 38 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.16 3.27 7.94 -2.91 -0.02 3.25 16 Total: -1.00 -59.60 329.67 6.99 -52.61 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.02 Total: 19.87 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.32 Total: -6.29 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.74 Total: -76.77 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 1.55 Total: -5.69 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.88 Total: 39.11 kcal Total: -59.60 6.99 -52.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439136021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.301 kcal (2) G-P(sol) polarization free energy of solvation -59.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds