Wall clock time and date at job start Tue Mar 31 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47212 * 2 1 4 4 C 1.50693 * 109.47205 * 120.00587 * 2 1 3 5 5 N 1.31893 * 122.84618 * 299.99731 * 4 2 1 6 6 C 1.28914 * 117.18843 * 180.02562 * 5 4 2 7 7 S 1.70959 * 110.31251 * 359.72106 * 6 5 4 8 8 C 1.34339 * 122.85115 * 120.00273 * 4 2 1 9 9 N 1.39861 * 126.06453 * 359.97438 * 8 4 2 10 10 C 1.34784 * 119.99858 * 180.02562 * 9 8 4 11 11 O 1.21597 * 119.99765 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99811 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.08996 * 109.47049 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47188 * 120.00098 * 14 12 10 17 17 C 1.50706 * 109.46582 * 239.99950 * 14 12 10 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 H 1.09004 * 109.46682 * 299.99489 * 1 2 3 26 26 H 1.09002 * 109.47594 * 59.99235 * 1 2 3 27 27 H 1.08998 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46682 * 240.00511 * 2 1 3 29 29 H 1.08993 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47466 * 300.00844 * 3 2 1 31 31 H 1.08997 * 109.46766 * 60.00276 * 3 2 1 32 32 H 1.07995 * 124.84408 * 180.02562 * 6 5 4 33 33 H 0.97004 * 120.00200 * 359.97438 * 9 8 4 34 34 H 1.09005 * 109.46851 * 270.00168 * 13 12 10 35 35 H 1.08997 * 109.47129 * 29.99442 * 13 12 10 36 36 H 1.08993 * 109.46804 * 150.00082 * 13 12 10 37 37 H 1.09002 * 109.47153 * 299.99573 * 16 14 12 38 38 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 39 39 H 1.09004 * 109.47261 * 59.99745 * 16 14 12 40 40 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 1.7485 -0.3091 2.4542 6 6 2.2365 -0.9984 3.4282 7 16 3.1543 -2.3091 2.8263 8 6 2.8073 -1.8064 1.1736 9 7 3.2544 -2.4393 0.0093 10 6 4.0307 -3.5378 0.0951 11 8 4.3426 -3.9782 1.1847 12 7 4.4611 -4.1481 -1.0269 13 6 4.0847 -3.6177 -2.3397 14 6 5.3044 -5.3424 -0.9337 15 1 5.4764 -5.5847 0.1150 16 6 4.6037 -6.5163 -1.6206 17 6 6.6246 -5.0791 -1.6111 18 1 6.8161 -4.1185 -2.0660 19 6 7.5879 -6.0648 -1.6501 20 7 7.3545 -7.2348 -1.0967 21 14 9.2246 -5.7383 -2.4892 22 1 9.9041 -4.5988 -1.8224 23 1 10.0794 -6.9489 -2.3948 24 1 8.9912 -5.4080 -3.9181 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 2.0829 -0.7819 4.4750 33 1 3.0052 -2.0881 -0.8599 34 1 3.1523 -4.0795 -2.6644 35 1 3.9506 -2.5382 -2.2706 36 1 4.8711 -3.8408 -3.0607 37 1 3.6489 -6.7067 -1.1306 38 1 5.2314 -7.4048 -1.5516 39 1 4.4320 -6.2737 -2.6693 40 1 8.0321 -7.9282 -1.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455843120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:08 Heat of formation + Delta-G solvation = 15.324788 kcal Electronic energy + Delta-G solvation = -22231.754129 eV Core-core repulsion = 18980.707699 eV Total energy + Delta-G solvation = -3251.046430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38301 -39.38983 -35.84653 -35.02672 -34.40478 -32.85088 -29.73817 -28.24367 -27.16072 -26.34890 -25.31014 -24.76815 -22.41562 -21.88281 -19.68950 -19.23897 -17.73667 -17.39418 -16.64924 -16.02495 -15.48493 -15.35140 -14.64586 -14.34016 -14.18288 -14.10741 -13.67425 -13.32854 -12.99442 -12.75878 -12.64853 -12.14973 -12.11754 -11.79806 -11.65238 -11.20944 -11.17363 -11.02410 -10.99078 -10.88672 -10.78366 -10.73797 -10.38026 -10.24863 -9.83920 -9.31592 -9.09365 -8.73931 -8.50973 -8.04547 -7.61266 -6.15186 -4.23849 1.03305 1.40973 2.12554 2.92570 2.97676 3.23200 3.29002 3.31052 3.63225 4.25783 4.38357 4.40452 4.80441 5.02089 5.14917 5.16459 5.30663 5.41942 5.49252 5.60896 5.80483 5.83143 5.83429 5.88949 6.09868 6.14014 6.21527 6.32095 6.51220 6.55330 6.69271 6.86127 6.99139 7.28727 7.55351 7.64939 7.93674 7.98151 8.08883 8.39150 8.72880 8.91481 9.42774 10.90125 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.004040 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.357632 B = 6929.317795 C = 7339.521919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.139 4.139 4 C -0.012 4.012 5 N -0.441 5.441 6 C -0.068 4.068 7 S 0.244 5.756 8 C 0.043 3.957 9 N -0.649 5.649 10 C 0.688 3.312 11 O -0.564 6.564 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.272 3.728 15 H 0.067 0.933 16 C -0.147 4.147 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.277 1.277 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.191 0.809 33 H 0.410 0.590 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.012 0.988 38 H 0.096 0.904 39 H 0.030 0.970 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 11.836 1.113 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.149 4.149 5 N -0.154 5.154 6 C -0.366 4.366 7 S 0.493 5.507 8 C -0.178 4.178 9 N -0.300 5.300 10 C 0.389 3.611 11 O -0.442 6.442 12 N -0.328 5.328 13 C -0.064 4.064 14 C 0.173 3.827 15 H 0.085 0.915 16 C -0.206 4.206 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.208 0.792 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.676 10.861 2.451 15.425 hybrid contribution 0.511 0.758 -1.732 1.958 sum -10.165 11.619 0.719 15.455 Atomic orbital electron populations 1.21764 0.94065 1.01779 1.02009 1.19488 0.96081 0.95603 0.91738 1.21766 1.00903 0.94994 1.02002 1.19794 1.04529 0.96623 0.93921 1.66018 1.21715 1.29876 0.97805 1.28351 1.04957 1.00400 1.02927 1.85156 1.46886 1.25384 0.93283 1.23394 1.03054 0.98214 0.93099 1.42424 1.52412 1.28794 1.06339 1.16069 0.79301 0.79696 0.86032 1.90827 1.61808 1.65680 1.25905 1.47599 1.51852 1.30711 1.02653 1.21626 1.01301 0.96454 0.86998 1.18985 0.86575 0.77890 0.99300 0.91546 1.22110 0.97941 1.02486 0.98021 1.21253 0.98795 0.99511 1.37366 0.92256 1.24873 0.98569 0.94894 0.95256 1.69859 1.34705 1.04038 1.43752 0.86528 0.83173 0.77750 0.79776 1.20217 1.21088 1.20211 0.91742 0.92578 0.92968 0.91294 0.92925 0.92570 0.91745 0.79218 0.75064 0.93403 0.93513 0.89152 0.96912 0.88574 0.95072 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.14 37.16 0.34 -1.09 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -1.46 9.14 37.16 0.34 -1.12 16 4 C -0.01 -0.18 5.33 -83.94 -0.45 -0.62 16 5 N -0.44 -6.37 10.44 -11.75 -0.12 -6.49 16 6 C -0.07 -0.90 12.21 51.54 0.63 -0.27 16 7 S 0.24 3.79 20.46 -107.50 -2.20 1.59 16 8 C 0.04 0.69 7.18 -15.26 -0.11 0.58 16 9 N -0.65 -10.49 5.28 -14.96 -0.08 -10.57 16 10 C 0.69 13.99 8.25 -86.91 -0.72 13.27 16 11 O -0.56 -13.24 13.30 5.28 0.07 -13.17 16 12 N -0.59 -12.14 2.75 -181.00 -0.50 -12.64 16 13 C 0.08 1.25 9.20 59.85 0.55 1.80 16 14 C 0.27 6.68 2.64 -69.08 -0.18 6.50 16 15 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 17 C -0.53 -13.80 7.99 -34.44 -0.28 -14.08 16 18 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 21 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.71 6.48 -51.93 -0.34 0.38 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.41 5.37 4.93 -40.82 -0.20 5.17 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 36 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -30.22 337.29 -7.70 -37.92 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.63 Total: 3.29 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 0.07 Total: 3.22 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.07 Total: -53.39 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.20 Total: 1.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.22 -7.70 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455843120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.243 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds