Wall clock time and date at job start Tue Mar 31 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47212 * 2 1 4 4 C 1.50693 * 109.47205 * 120.00587 * 2 1 3 5 5 N 1.31893 * 122.84618 * 299.99731 * 4 2 1 6 6 C 1.28914 * 117.18843 * 180.02562 * 5 4 2 7 7 S 1.70959 * 110.31251 * 359.72106 * 6 5 4 8 8 C 1.34339 * 122.85115 * 120.00273 * 4 2 1 9 9 N 1.39861 * 126.06453 * 359.97438 * 8 4 2 10 10 C 1.34784 * 119.99858 * 180.02562 * 9 8 4 11 11 O 1.21597 * 119.99765 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99811 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.08996 * 109.47049 * 359.97438 * 14 12 10 16 16 C 1.52997 * 109.47188 * 120.00098 * 14 12 10 17 17 C 1.50706 * 109.46582 * 239.99950 * 14 12 10 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 H 1.09004 * 109.46682 * 299.99489 * 1 2 3 26 26 H 1.09002 * 109.47594 * 59.99235 * 1 2 3 27 27 H 1.08998 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46682 * 240.00511 * 2 1 3 29 29 H 1.08993 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47466 * 300.00844 * 3 2 1 31 31 H 1.08997 * 109.46766 * 60.00276 * 3 2 1 32 32 H 1.07995 * 124.84408 * 180.02562 * 6 5 4 33 33 H 0.97004 * 120.00200 * 359.97438 * 9 8 4 34 34 H 1.09005 * 109.46851 * 270.00168 * 13 12 10 35 35 H 1.08997 * 109.47129 * 29.99442 * 13 12 10 36 36 H 1.08993 * 109.46804 * 150.00082 * 13 12 10 37 37 H 1.09002 * 109.47153 * 299.99573 * 16 14 12 38 38 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 39 39 H 1.09004 * 109.47261 * 59.99745 * 16 14 12 40 40 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 1.7485 -0.3091 2.4542 6 6 2.2365 -0.9984 3.4282 7 16 3.1543 -2.3091 2.8263 8 6 2.8073 -1.8064 1.1736 9 7 3.2544 -2.4393 0.0093 10 6 4.0307 -3.5378 0.0951 11 8 4.3426 -3.9782 1.1847 12 7 4.4611 -4.1481 -1.0269 13 6 4.0847 -3.6177 -2.3397 14 6 5.3044 -5.3424 -0.9337 15 1 5.4764 -5.5847 0.1150 16 6 4.6037 -6.5163 -1.6206 17 6 6.6246 -5.0791 -1.6111 18 1 6.8161 -4.1185 -2.0660 19 6 7.5879 -6.0648 -1.6501 20 7 7.3545 -7.2348 -1.0967 21 14 9.2246 -5.7383 -2.4892 22 1 9.9041 -4.5988 -1.8224 23 1 10.0794 -6.9489 -2.3948 24 1 8.9912 -5.4080 -3.9181 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 2.0829 -0.7819 4.4750 33 1 3.0052 -2.0881 -0.8599 34 1 3.1523 -4.0795 -2.6644 35 1 3.9506 -2.5382 -2.2706 36 1 4.8711 -3.8408 -3.0607 37 1 3.6489 -6.7067 -1.1306 38 1 5.2314 -7.4048 -1.5516 39 1 4.4320 -6.2737 -2.6693 40 1 8.0321 -7.9282 -1.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455843120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:08 Heat of formation + Delta-G solvation = -3.348411 kcal Electronic energy + Delta-G solvation = -22232.563860 eV Core-core repulsion = 18980.707699 eV Total energy + Delta-G solvation = -3251.856161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73809 -40.68113 -37.49653 -36.27536 -35.55540 -34.68412 -31.47989 -29.50578 -27.96361 -27.72752 -27.30114 -25.96284 -23.54024 -23.39494 -21.22724 -20.48566 -19.17510 -18.54310 -18.41672 -17.47224 -17.08381 -16.81363 -16.29834 -15.55883 -15.32019 -15.06209 -14.98153 -14.74240 -14.47498 -14.18249 -13.72063 -13.56105 -13.15447 -13.13685 -12.93804 -12.91554 -12.76301 -12.69220 -12.33200 -12.19125 -12.13774 -12.04853 -11.85433 -11.78026 -11.37544 -11.21371 -10.53590 -10.32156 -9.98293 -9.54042 -8.93876 -8.14881 -6.31244 -0.14009 0.25277 0.95106 1.42732 1.44622 1.51482 1.60793 1.73745 2.17114 2.41702 2.94175 3.13870 3.39776 3.86811 4.10128 4.24583 4.29062 4.29720 4.57733 4.62536 4.68564 4.87035 4.88013 4.91675 4.94569 5.02070 5.02353 5.03469 5.08639 5.31727 5.36787 5.40431 5.46667 5.50112 5.62132 5.85553 6.08350 6.15079 6.74142 6.83480 6.86529 7.29465 7.44428 8.89234 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.004040 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.357632 B = 6929.317795 C = 7339.521919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.014 4.014 3 C -0.134 4.134 4 C 0.005 3.995 5 N -0.456 5.456 6 C -0.035 4.035 7 S 0.191 5.809 8 C 0.010 3.990 9 N -0.632 5.632 10 C 0.683 3.317 11 O -0.606 6.606 12 N -0.603 5.603 13 C 0.075 3.925 14 C 0.279 3.721 15 H 0.015 0.985 16 C -0.132 4.132 17 C -0.540 4.540 18 H 0.062 0.938 19 C 0.019 3.981 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.228 0.772 33 H 0.424 0.576 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.019 0.981 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 14.051 -0.303 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.192 4.192 4 C -0.131 4.131 5 N -0.169 5.169 6 C -0.334 4.334 7 S 0.441 5.559 8 C -0.209 4.209 9 N -0.284 5.284 10 C 0.384 3.616 11 O -0.487 6.487 12 N -0.336 5.336 13 C -0.067 4.067 14 C 0.177 3.823 15 H 0.033 0.967 16 C -0.191 4.191 17 C -0.579 4.579 18 H 0.080 0.920 19 C -0.181 4.181 20 N -0.554 5.554 21 Si 0.789 3.211 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.187 1.187 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.266 0.734 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.763 13.126 0.998 17.654 hybrid contribution 0.733 0.179 -1.179 1.399 sum -11.030 13.306 -0.180 17.284 Atomic orbital electron populations 1.21722 0.92942 1.01599 1.02819 1.19720 0.96989 0.96056 0.90799 1.21727 1.00284 0.94324 1.02837 1.20309 1.02453 0.95423 0.94917 1.66140 1.22475 1.30213 0.98119 1.28923 1.02131 0.98023 1.04293 1.85364 1.48361 1.27423 0.94766 1.23475 1.05300 0.99564 0.92604 1.41967 1.51664 1.27573 1.07228 1.16175 0.79615 0.80443 0.85345 1.90805 1.63328 1.67096 1.27441 1.47428 1.51597 1.29992 1.04579 1.21887 1.01871 0.98714 0.84247 1.18538 0.87436 0.80122 0.96190 0.96724 1.21890 0.97440 1.00799 0.98954 1.21524 0.99653 0.99549 1.37149 0.91998 1.25677 1.01864 0.94703 0.95890 1.70003 1.35678 1.04831 1.44858 0.85534 0.78987 0.77278 0.79349 1.20484 1.21007 1.18651 0.92604 0.90124 0.93631 0.89907 0.93825 0.90099 0.92583 0.75610 0.73351 0.91063 0.90070 0.90088 0.96172 0.91160 0.93284 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.14 71.98 0.66 -1.70 16 2 C -0.01 -0.29 3.26 -11.54 -0.04 -0.33 16 3 C -0.13 -2.43 9.14 71.98 0.66 -1.78 16 4 C 0.01 0.14 5.33 41.66 0.22 0.36 16 5 N -0.46 -12.31 10.44 -191.09 -1.99 -14.31 16 6 C -0.04 -0.87 12.21 130.67 1.60 0.73 16 7 S 0.19 5.99 20.46 -56.49 -1.16 4.83 16 8 C 0.01 0.31 7.18 82.52 0.59 0.90 16 9 N -0.63 -19.88 5.28 -319.51 -1.69 -21.56 16 10 C 0.68 28.10 8.25 179.05 1.48 29.58 16 11 O -0.61 -29.68 13.30 -4.02 -0.05 -29.73 16 12 N -0.60 -24.57 2.75 -844.82 -2.33 -26.90 16 13 C 0.08 2.18 9.20 127.77 1.17 3.36 16 14 C 0.28 14.05 2.64 44.25 0.12 14.17 16 15 H 0.01 0.89 6.90 -2.39 -0.02 0.88 16 16 C -0.13 -6.16 8.97 71.98 0.65 -5.51 16 17 C -0.54 -28.39 7.99 25.60 0.20 -28.19 16 18 H 0.06 3.14 7.33 -2.91 -0.02 3.12 16 19 C 0.02 1.00 5.30 84.66 0.45 1.45 16 20 N -0.92 -51.49 11.32 21.45 0.24 -51.25 16 21 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.44 6.48 -2.38 -0.02 1.42 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.23 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.42 10.19 4.93 -92.71 -0.46 9.73 16 34 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.08 1.76 6.36 -2.39 -0.02 1.75 16 36 H 0.08 2.53 7.02 -2.39 -0.02 2.51 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 39 H 0.05 2.05 7.67 -2.38 -0.02 2.03 16 40 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -67.65 337.29 3.41 -64.24 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.60 Total: 17.59 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.76 Total: 13.04 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -5.76 Total: -114.02 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.16 Total: 4.83 kcal Total: -67.65 3.41 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455843120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.896 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds