Wall clock time and date at job start Tue Mar 31 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99835 * 2 1 4 4 C 1.50705 * 109.47066 * 269.99301 * 3 2 1 5 5 H 1.08001 * 119.99948 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00118 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99717 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47232 * 89.99962 * 8 6 4 10 10 H 1.48504 * 109.46678 * 209.99818 * 8 6 4 11 11 H 1.48493 * 109.47140 * 329.99738 * 8 6 4 12 12 C 1.34773 * 119.99817 * 179.97438 * 2 1 3 13 13 O 1.21649 * 120.00124 * 180.02562 * 12 2 1 14 14 C 1.46753 * 120.00306 * 0.02562 * 12 2 1 15 15 C 1.34645 * 120.00134 * 188.48645 * 14 12 2 16 16 C 1.47361 * 120.00102 * 31.68709 * 15 14 12 17 17 C 1.40957 * 119.79148 * 185.60988 * 16 15 14 18 18 N 1.31138 * 120.53392 * 180.29815 * 17 16 15 19 19 C 1.33883 * 119.87077 * 359.45435 * 18 17 16 20 20 C 1.40493 * 120.94486 * 180.24601 * 19 18 17 21 21 C 1.36113 * 119.76391 * 180.29414 * 20 19 18 22 22 C 1.39443 * 121.00362 * 0.02562 * 21 20 19 23 23 C 1.36020 * 120.96295 * 359.95612 * 22 21 20 24 24 C 1.40784 * 119.70588 * 0.04247 * 23 22 21 25 25 N 1.32422 * 119.79092 * 5.63048 * 16 15 14 26 26 H 1.09000 * 109.47569 * 270.00379 * 1 2 3 27 27 H 1.09000 * 109.47317 * 30.00609 * 1 2 3 28 28 H 1.08999 * 109.46887 * 150.00314 * 1 2 3 29 29 H 1.09000 * 109.47593 * 29.99623 * 3 2 1 30 30 H 1.09006 * 109.47190 * 149.99908 * 3 2 1 31 31 H 0.97006 * 119.99873 * 179.97438 * 7 6 4 32 32 H 1.08005 * 119.99718 * 8.48390 * 14 12 2 33 33 H 1.07999 * 120.00096 * 211.68580 * 15 14 12 34 34 H 1.07993 * 119.73013 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.11821 * 0.27209 * 20 19 18 36 36 H 1.07999 * 119.50459 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.51839 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.14648 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5550 3.6170 -0.6733 8 14 3.4378 3.4167 -3.4341 9 1 2.3080 4.2602 -3.9002 10 1 4.6985 4.1990 -3.4969 11 1 3.5541 2.2197 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3554 -1.1673 0.0010 14 6 1.4051 -2.4381 0.0005 15 6 2.0672 -3.5978 0.1731 16 6 3.2789 -3.6368 1.0109 17 6 4.0352 -4.8234 1.0937 18 7 5.1126 -4.8761 1.8393 19 6 5.5060 -3.7925 2.5202 20 6 6.6595 -3.8223 3.3217 21 6 7.0341 -2.7083 4.0083 22 6 6.2892 -1.5321 3.9304 23 6 5.1669 -1.4640 3.1649 24 6 4.7472 -2.5954 2.4398 25 7 3.6501 -2.5570 1.6816 26 1 -0.3634 0.0001 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 4.0326 4.4425 -0.8506 32 1 0.3340 -2.4432 -0.1379 33 1 1.7103 -4.4993 -0.3024 34 1 3.7223 -5.6975 0.5419 35 1 7.2466 -4.7259 3.3931 36 1 7.9213 -2.7360 4.6236 37 1 6.6087 -0.6622 4.4850 38 1 4.6001 -0.5460 3.1137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491352711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:42 Heat of formation + Delta-G solvation = 86.090106 kcal Electronic energy + Delta-G solvation = -23149.564164 eV Core-core repulsion = 19766.142397 eV Total energy + Delta-G solvation = -3383.421767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15543 -38.87586 -37.37820 -35.10501 -34.36187 -33.14038 -32.49413 -30.51400 -29.85712 -27.85223 -25.96317 -25.41123 -24.16927 -23.16034 -22.08808 -20.90004 -18.75106 -18.18422 -17.59327 -16.68769 -16.43583 -16.01376 -15.13188 -14.96294 -14.83658 -14.41517 -14.25791 -14.14689 -13.70859 -13.46103 -12.98255 -12.53236 -12.30072 -12.08855 -11.99671 -11.78219 -11.71125 -11.62574 -11.47037 -11.16628 -11.04661 -10.87291 -10.52958 -10.12574 -9.67364 -9.52551 -8.92421 -8.75440 -8.57770 -8.40889 -7.92491 -7.48105 -6.01467 -4.05954 0.16690 0.55542 1.58584 2.23270 3.06882 3.30856 3.37494 3.42173 4.04091 4.09565 4.18403 4.24646 4.29633 4.41411 4.47906 4.78901 4.85857 5.06934 5.17763 5.20603 5.31603 5.36377 5.40397 5.56707 5.76465 5.88725 5.98614 6.02839 6.12669 6.16774 6.27035 6.31883 6.42364 6.46970 6.80389 7.15137 7.48044 7.51631 7.63444 7.96096 7.98991 8.27715 8.53312 8.95234 9.26660 9.59420 11.06221 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004607 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.622592 B = 6075.622101 C = 7062.017450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.248 3.752 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.146 4.146 15 C -0.072 4.072 16 C 0.115 3.885 17 C 0.093 3.907 18 N -0.439 5.439 19 C 0.074 3.926 20 C -0.094 4.094 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.063 4.063 24 C 0.086 3.914 25 N -0.354 5.354 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -15.250 7.971 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.129 3.871 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.170 4.170 15 C -0.093 4.093 16 C -0.037 4.037 17 C -0.083 4.083 18 N -0.152 5.152 19 C -0.050 4.050 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.082 4.082 24 C -0.040 4.040 25 N -0.068 5.068 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.841 -14.935 8.173 17.046 hybrid contribution 0.038 0.489 -1.258 1.351 sum -0.803 -14.445 6.915 16.035 Atomic orbital electron populations 1.21657 0.81772 1.02362 1.00308 1.48090 1.05928 1.07898 1.71076 1.19228 0.92533 0.78116 0.97224 1.21459 1.36267 1.06142 0.92401 0.92578 1.24925 0.95424 0.96446 0.97305 1.69933 1.38521 1.14359 1.30653 0.86524 0.77657 0.78561 0.84841 1.20635 1.21129 1.19966 1.18116 0.87603 0.83618 0.78631 1.90759 1.13307 1.86466 1.48481 1.23669 0.99618 0.93957 0.99739 1.21932 0.92550 0.98748 0.96027 1.21204 0.95683 0.89909 0.96893 1.23982 0.90605 0.98344 0.95384 1.68576 1.13367 1.27707 1.05592 1.19648 0.96819 0.90572 0.97936 1.20690 0.95089 0.99354 0.96177 1.20981 0.99597 0.92597 0.98626 1.20975 0.94847 0.98357 0.99105 1.20998 0.96296 0.97306 0.93612 1.19691 0.93494 0.94340 0.96506 1.69208 1.12202 1.24461 1.00954 0.93858 0.90960 0.92419 0.95222 0.93843 0.92803 0.84528 0.83511 0.81196 0.84798 0.85087 0.84866 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.20 59.85 0.61 1.94 16 2 N -0.60 -12.96 2.86 -184.49 -0.53 -13.49 16 3 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 4 C -0.52 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.53 11.38 6.87 -12.82 -0.09 11.29 16 13 O -0.51 -13.08 12.80 5.23 0.07 -13.02 16 14 C -0.15 -2.23 9.12 -37.41 -0.34 -2.57 16 15 C -0.07 -0.95 9.78 -37.14 -0.36 -1.32 16 16 C 0.11 1.86 6.13 -82.87 -0.51 1.35 16 17 C 0.09 1.28 10.95 -16.82 -0.18 1.10 16 18 N -0.44 -6.83 10.45 -10.46 -0.11 -6.94 16 19 C 0.07 1.21 6.59 -84.70 -0.56 0.65 16 20 C -0.09 -1.23 9.98 -39.50 -0.39 -1.62 16 21 C -0.10 -1.12 9.95 -39.90 -0.40 -1.51 16 22 C -0.11 -1.44 9.95 -39.93 -0.40 -1.84 16 23 C -0.06 -1.03 9.99 -39.42 -0.39 -1.43 16 24 C 0.09 1.56 6.59 -84.79 -0.56 1.01 16 25 N -0.35 -6.84 6.38 -7.50 -0.05 -6.89 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.14 1.56 6.15 -52.48 -0.32 1.23 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -36.77 331.07 -8.30 -45.06 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.36 Total: -0.61 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -4.02 Total: -0.11 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.05 Total: -53.46 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.77 -8.30 -45.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.152 kcal (2) G-P(sol) polarization free energy of solvation -36.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds