Wall clock time and date at job start Tue Mar 31 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99835 * 2 1 4 4 C 1.50705 * 109.47066 * 269.99301 * 3 2 1 5 5 H 1.08001 * 119.99948 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00118 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99717 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47232 * 89.99962 * 8 6 4 10 10 H 1.48504 * 109.46678 * 209.99818 * 8 6 4 11 11 H 1.48493 * 109.47140 * 329.99738 * 8 6 4 12 12 C 1.34773 * 119.99817 * 179.97438 * 2 1 3 13 13 O 1.21649 * 120.00124 * 180.02562 * 12 2 1 14 14 C 1.46753 * 120.00306 * 0.02562 * 12 2 1 15 15 C 1.34645 * 120.00134 * 188.48645 * 14 12 2 16 16 C 1.47361 * 120.00102 * 31.68709 * 15 14 12 17 17 C 1.40957 * 119.79148 * 185.60988 * 16 15 14 18 18 N 1.31138 * 120.53392 * 180.29815 * 17 16 15 19 19 C 1.33883 * 119.87077 * 359.45435 * 18 17 16 20 20 C 1.40493 * 120.94486 * 180.24601 * 19 18 17 21 21 C 1.36113 * 119.76391 * 180.29414 * 20 19 18 22 22 C 1.39443 * 121.00362 * 0.02562 * 21 20 19 23 23 C 1.36020 * 120.96295 * 359.95612 * 22 21 20 24 24 C 1.40784 * 119.70588 * 0.04247 * 23 22 21 25 25 N 1.32422 * 119.79092 * 5.63048 * 16 15 14 26 26 H 1.09000 * 109.47569 * 270.00379 * 1 2 3 27 27 H 1.09000 * 109.47317 * 30.00609 * 1 2 3 28 28 H 1.08999 * 109.46887 * 150.00314 * 1 2 3 29 29 H 1.09000 * 109.47593 * 29.99623 * 3 2 1 30 30 H 1.09006 * 109.47190 * 149.99908 * 3 2 1 31 31 H 0.97006 * 119.99873 * 179.97438 * 7 6 4 32 32 H 1.08005 * 119.99718 * 8.48390 * 14 12 2 33 33 H 1.07999 * 120.00096 * 211.68580 * 15 14 12 34 34 H 1.07993 * 119.73013 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.11821 * 0.27209 * 20 19 18 36 36 H 1.07999 * 119.50459 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.51839 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.14648 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5550 3.6170 -0.6733 8 14 3.4378 3.4167 -3.4341 9 1 2.3080 4.2602 -3.9002 10 1 4.6985 4.1990 -3.4969 11 1 3.5541 2.2197 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3554 -1.1673 0.0010 14 6 1.4051 -2.4381 0.0005 15 6 2.0672 -3.5978 0.1731 16 6 3.2789 -3.6368 1.0109 17 6 4.0352 -4.8234 1.0937 18 7 5.1126 -4.8761 1.8393 19 6 5.5060 -3.7925 2.5202 20 6 6.6595 -3.8223 3.3217 21 6 7.0341 -2.7083 4.0083 22 6 6.2892 -1.5321 3.9304 23 6 5.1669 -1.4640 3.1649 24 6 4.7472 -2.5954 2.4398 25 7 3.6501 -2.5570 1.6816 26 1 -0.3634 0.0001 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 4.0326 4.4425 -0.8506 32 1 0.3340 -2.4432 -0.1379 33 1 1.7103 -4.4993 -0.3024 34 1 3.7223 -5.6975 0.5419 35 1 7.2466 -4.7259 3.3931 36 1 7.9213 -2.7360 4.6236 37 1 6.6087 -0.6622 4.4850 38 1 4.6001 -0.5460 3.1137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491352711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:42 Heat of formation + Delta-G solvation = 60.492239 kcal Electronic energy + Delta-G solvation = -23150.674171 eV Core-core repulsion = 19766.142397 eV Total energy + Delta-G solvation = -3384.531774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28950 -40.43911 -38.49920 -36.62586 -35.77157 -34.76805 -34.17933 -31.62265 -31.08519 -29.73789 -27.35322 -26.81730 -25.52093 -24.78673 -23.23373 -22.35976 -19.94745 -19.44509 -18.78502 -18.68196 -18.06745 -17.34035 -16.81255 -16.21162 -16.05700 -15.94450 -15.73956 -15.42269 -14.87444 -14.65570 -14.38865 -14.15887 -13.81362 -13.66246 -13.44081 -13.08548 -13.04737 -12.82331 -12.77265 -12.68233 -12.64091 -12.49789 -12.33629 -12.14045 -11.71908 -10.79857 -10.65685 -10.42943 -9.99154 -9.69513 -9.25217 -9.11479 -8.22648 -6.38634 -0.98040 -0.53493 0.45392 1.08309 1.33065 1.36438 1.46752 1.99451 2.31356 2.58962 2.65961 3.03232 3.05278 3.15909 3.19818 3.29067 3.69116 3.87558 3.97781 4.07323 4.18529 4.30674 4.35633 4.47828 4.64044 4.75056 4.88360 4.91888 4.93242 4.99758 5.10767 5.14697 5.22131 5.25933 5.35030 5.46192 5.57582 5.76495 5.91183 6.07120 6.35568 6.70435 6.84223 6.92416 7.28719 7.69248 8.83453 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004607 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.622592 B = 6075.622101 C = 7062.017450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.571 6.571 14 C -0.170 4.170 15 C -0.039 4.039 16 C 0.087 3.913 17 C 0.101 3.899 18 N -0.450 5.450 19 C 0.055 3.945 20 C -0.097 4.097 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.106 4.106 24 C 0.051 3.949 25 N -0.400 5.400 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.016 0.984 30 H -0.009 1.009 31 H 0.266 0.734 32 H 0.182 0.818 33 H 0.212 0.788 34 H 0.223 0.777 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -18.012 7.118 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.311 3.689 13 O -0.451 6.451 14 C -0.194 4.194 15 C -0.059 4.059 16 C -0.066 4.066 17 C -0.075 4.075 18 N -0.163 5.163 19 C -0.068 4.068 20 C -0.116 4.116 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.075 4.075 25 N -0.115 5.115 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.034 0.966 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.229 0.771 34 H 0.240 0.760 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.214 -17.706 7.344 19.207 hybrid contribution 0.224 1.289 -0.878 1.576 sum -0.990 -16.416 6.466 17.672 Atomic orbital electron populations 1.21931 0.78231 1.04040 1.02098 1.48123 1.08176 1.06450 1.71556 1.18600 0.90713 0.80493 0.95699 1.21713 1.36666 1.06453 0.93014 0.92994 1.25887 0.94906 0.96440 1.02050 1.70066 1.39027 1.14816 1.33074 0.85404 0.78148 0.78174 0.79004 1.18498 1.20659 1.19897 1.19203 0.87502 0.85282 0.76930 1.90727 1.15994 1.87523 1.50839 1.23605 1.01460 0.90913 1.03383 1.22743 0.89963 1.00446 0.92744 1.21978 0.97236 0.90115 0.97261 1.24746 0.89362 0.98973 0.94395 1.68671 1.14210 1.27207 1.06214 1.20032 0.97741 0.90195 0.98872 1.21110 0.94157 1.00965 0.95329 1.21461 1.00192 0.90975 0.97882 1.21365 0.93006 1.00108 0.97139 1.20991 0.98513 0.96451 0.96642 1.19997 0.94297 0.95648 0.97536 1.69139 1.13513 1.26501 1.02350 0.91956 0.91867 0.88108 0.96593 0.99083 0.92474 0.80051 0.77116 0.76045 0.82132 0.80393 0.82155 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 10.20 127.77 1.30 3.79 16 2 N -0.61 -27.68 2.86 -855.84 -2.44 -30.12 16 3 C 0.27 15.27 5.16 85.64 0.44 15.71 16 4 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.34 5.46 84.65 0.46 0.81 16 7 N -0.93 -58.19 13.29 21.44 0.28 -57.91 16 8 Si 0.97 46.33 29.54 68.60 2.03 48.35 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.52 23.02 6.87 86.47 0.59 23.62 16 13 O -0.57 -31.13 12.80 -4.19 -0.05 -31.18 16 14 C -0.17 -4.89 9.12 23.67 0.22 -4.68 16 15 C -0.04 -0.92 9.78 23.85 0.23 -0.69 16 16 C 0.09 2.75 6.13 42.12 0.26 3.01 16 17 C 0.10 2.59 10.95 85.46 0.94 3.53 16 18 N -0.45 -13.47 10.45 -187.00 -1.95 -15.43 16 19 C 0.05 1.79 6.59 40.30 0.27 2.06 16 20 C -0.10 -2.39 9.98 22.32 0.22 -2.17 16 21 C -0.09 -1.79 9.95 22.07 0.22 -1.57 16 22 C -0.10 -2.51 9.95 22.04 0.22 -2.29 16 23 C -0.11 -3.86 9.99 22.38 0.22 -3.64 16 24 C 0.05 1.97 6.59 40.45 0.27 2.24 16 25 N -0.40 -16.42 6.38 -177.65 -1.13 -17.55 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.10 2.27 6.01 -2.39 -0.01 2.26 16 29 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 30 H -0.01 -0.60 7.42 -2.38 -0.02 -0.61 16 31 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 32 H 0.18 3.40 6.15 -2.91 -0.02 3.38 16 33 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -90.59 331.07 3.91 -86.68 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.08 Total: 9.66 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.10 Total: 7.50 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -5.25 Total: -121.01 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.05 Total: -31.18 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -90.59 3.91 -86.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.171 kcal (2) G-P(sol) polarization free energy of solvation -90.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds