Wall clock time and date at job start Tue Mar 31 2020 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47222 * 11.94492 * 3 2 1 5 5 C 1.37099 * 119.99671 * 263.73364 * 4 3 2 6 6 H 1.08001 * 119.99535 * 142.46506 * 5 4 3 7 7 C 1.38946 * 120.00437 * 322.45986 * 5 4 3 8 8 N 1.31413 * 120.00227 * 157.50950 * 7 5 4 9 9 Si 1.86802 * 119.99897 * 337.52102 * 7 5 4 10 10 H 1.48495 * 109.47461 * 95.70052 * 9 7 5 11 11 H 1.48497 * 109.46856 * 215.70201 * 9 7 5 12 12 H 1.48500 * 109.46931 * 335.69854 * 9 7 5 13 13 C 1.34770 * 120.00165 * 83.73412 * 4 3 2 14 14 O 1.21293 * 120.00209 * 180.02562 * 13 4 3 15 15 C 1.50710 * 120.00044 * 359.97438 * 13 4 3 16 16 C 1.50690 * 109.47323 * 180.02562 * 15 13 4 17 17 N 1.30249 * 126.10991 * 89.97424 * 16 15 13 18 18 N 1.39877 * 110.08445 * 180.02562 * 17 16 15 19 19 C 1.46504 * 125.45513 * 179.97438 * 18 17 16 20 20 C 1.37035 * 109.08039 * 0.02562 * 18 17 16 21 21 C 1.39278 * 133.84925 * 180.02562 * 20 18 17 22 22 C 1.36596 * 119.85308 * 179.97438 * 21 20 18 23 23 C 1.38960 * 120.81295 * 359.97333 * 22 21 20 24 24 C 1.36462 * 120.63231 * 0.02562 * 23 22 21 25 25 C 1.39953 * 119.63450 * 0.26471 * 24 23 22 26 26 H 4.40641 * 5.51352 * 180.02562 * 4 1 2 27 27 H 1.09005 * 109.46985 * 251.94547 * 3 2 1 28 28 H 1.08995 * 109.47169 * 131.94249 * 3 2 1 29 29 H 0.96994 * 119.99899 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46398 * 59.99972 * 15 13 4 31 31 H 1.09000 * 109.46770 * 300.00096 * 15 13 4 32 32 H 1.08994 * 109.46804 * 270.02031 * 19 18 17 33 33 H 1.08999 * 109.46900 * 30.02626 * 19 18 17 34 34 H 1.09001 * 109.46396 * 150.02460 * 19 18 17 35 35 H 1.08002 * 120.07592 * 359.97438 * 21 20 18 36 36 H 1.07998 * 119.59321 * 180.02562 * 22 21 20 37 37 H 1.08007 * 119.68862 * 180.02562 * 23 22 21 38 38 H 1.08002 * 120.18837 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3505 -0.2859 5 6 3.4860 -2.1845 0.7440 6 1 3.2665 -3.2402 0.6826 7 6 4.1243 -1.6718 1.8667 8 7 4.0716 -2.3226 3.0071 9 14 5.0569 -0.0571 1.7549 10 1 4.1788 1.0537 2.2022 11 1 6.2590 -0.1187 2.6246 12 1 5.4743 0.1771 0.3492 13 6 3.2397 -1.7734 -1.5612 14 8 3.6441 -2.8922 -1.7979 15 6 2.8533 -0.8567 -2.6933 16 6 3.0617 -1.5652 -4.0068 17 7 2.1820 -2.2918 -4.6351 18 7 2.7299 -2.7901 -5.8217 19 6 2.0339 -3.6468 -6.7851 20 6 4.0223 -2.3495 -5.9381 21 6 5.0207 -2.5293 -6.8923 22 6 6.2414 -1.9416 -6.7182 23 6 6.5030 -1.1626 -5.5976 24 6 5.5442 -0.9689 -4.6462 25 6 4.2874 -1.5654 -4.7988 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0092 0.3193 0.9771 28 1 3.0090 0.6877 -0.7644 29 1 4.5175 -1.9648 3.7907 30 1 3.4718 0.0403 -2.6616 31 1 1.8041 -0.5784 -2.5934 32 1 2.1913 -4.6925 -6.5213 33 1 0.9672 -3.4235 -6.7654 34 1 2.4256 -3.4614 -7.7852 35 1 4.8303 -3.1320 -7.7681 36 1 7.0125 -2.0834 -7.4610 37 1 7.4746 -0.7060 -5.4785 38 1 5.7554 -0.3624 -3.7779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491654611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:51 Heat of formation + Delta-G solvation = 131.936675 kcal Electronic energy + Delta-G solvation = -23204.682218 eV Core-core repulsion = 19823.248508 eV Total energy + Delta-G solvation = -3381.433711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12962 -38.85564 -37.07408 -35.40219 -33.86852 -32.67478 -31.60982 -30.33682 -29.95233 -29.54845 -26.76956 -25.87966 -24.37100 -22.80124 -21.74098 -20.17330 -18.79287 -18.43533 -16.89892 -16.81735 -16.67042 -16.18721 -15.63872 -15.21567 -15.13004 -14.62902 -14.16101 -13.96810 -13.60841 -13.24793 -13.04760 -13.01532 -12.81547 -12.67584 -12.40650 -12.13315 -11.86871 -11.57411 -11.47454 -10.96664 -10.92608 -10.80085 -10.41492 -10.26668 -9.81906 -9.75943 -9.57197 -9.15516 -8.63431 -8.47226 -7.89946 -7.68390 -6.41893 -3.99873 1.09615 1.63929 2.50794 2.66472 2.98192 3.15819 3.17337 3.20842 3.34417 3.67657 3.90637 4.11410 4.42923 4.57326 4.64450 4.77151 4.82685 5.04422 5.06080 5.10858 5.20570 5.31169 5.39990 5.48033 5.49835 5.64314 5.68191 5.79341 5.87518 5.91186 5.99151 6.16311 6.39418 6.44498 6.61568 6.65657 6.95166 7.19069 7.49044 7.86729 8.08761 8.24429 8.44706 8.91723 9.25859 9.68699 10.70167 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004806 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.943967 B = 5824.991013 C = 6586.758460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.191 3.809 4 N -0.463 5.463 5 C -0.315 4.315 6 H 0.106 0.894 7 C 0.062 3.938 8 N -0.859 5.859 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.258 1.258 13 C 0.479 3.521 14 O -0.545 6.545 15 C -0.067 4.067 16 C 0.138 3.862 17 N -0.245 5.245 18 N -0.414 5.414 19 C 0.115 3.885 20 C 0.128 3.872 21 C -0.147 4.147 22 C -0.073 4.073 23 C -0.167 4.167 24 C -0.031 4.031 25 C -0.162 4.162 26 H 0.213 0.787 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.275 0.725 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 6.573 -17.575 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.180 4.180 3 C 0.068 3.932 4 N -0.185 5.185 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.145 4.145 8 N -0.495 5.495 9 Si 0.691 3.309 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.266 3.734 14 O -0.424 6.424 15 C -0.109 4.109 16 C -0.040 4.040 17 N -0.057 5.057 18 N -0.201 5.201 19 C -0.027 4.027 20 C 0.013 3.987 21 C -0.169 4.169 22 C -0.094 4.094 23 C -0.187 4.187 24 C -0.052 4.052 25 C -0.170 4.170 26 H 0.230 0.770 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.226 5.349 -17.607 18.443 hybrid contribution 0.965 0.958 0.195 1.374 sum -0.261 6.307 -17.413 18.522 Atomic orbital electron populations 1.24739 0.95684 1.00716 1.02107 1.23755 0.94886 0.99942 0.99433 1.18950 0.84046 0.87512 1.02698 1.43640 1.57309 1.12413 1.05113 1.19015 1.37737 0.93466 0.93973 0.87673 1.25352 0.96229 0.98128 0.94751 1.69762 1.40061 1.40165 0.99492 0.87122 0.80695 0.83517 0.79523 1.19934 1.20882 1.18240 1.19899 0.81940 0.88611 0.82919 1.90611 1.47948 1.20691 1.83167 1.20194 1.04383 0.98244 0.88050 1.22792 0.90004 0.95997 0.95243 1.76569 1.22669 1.11891 0.94592 1.48050 1.08588 1.44931 1.18553 1.21659 0.98183 0.93224 0.89636 1.18808 0.86613 0.96643 0.96588 1.19721 0.92554 1.05462 0.99124 1.20641 0.95599 0.95727 0.97407 1.20596 0.99642 1.02885 0.95536 1.20406 0.90543 0.96290 0.97932 1.19739 0.95846 1.05283 0.96086 0.76984 0.88403 0.89517 0.91494 0.87692 0.87869 0.91461 0.89640 0.90153 0.86175 0.85701 0.85791 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.57 19.25 29.55 0.57 -3.00 16 2 C -0.18 -3.42 12.91 -37.12 -0.48 -3.90 16 3 C 0.19 3.82 4.27 -6.83 -0.03 3.80 16 4 N -0.46 -11.23 2.15 -117.93 -0.25 -11.49 16 5 C -0.32 -8.96 9.36 -14.93 -0.14 -9.10 16 6 H 0.11 3.40 7.91 -52.49 -0.42 2.99 16 7 C 0.06 1.69 5.26 -17.47 -0.09 1.60 16 8 N -0.86 -24.76 13.96 55.50 0.77 -23.98 16 9 Si 0.87 19.58 25.05 -169.99 -4.26 15.32 16 10 H -0.27 -5.70 6.69 56.52 0.38 -5.32 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.48 11.37 7.55 -10.98 -0.08 11.29 16 14 O -0.54 -15.27 15.90 5.55 0.09 -15.18 16 15 C -0.07 -1.21 4.90 -29.03 -0.14 -1.36 16 16 C 0.14 2.63 5.93 -80.19 -0.48 2.16 16 17 N -0.25 -4.72 12.40 34.84 0.43 -4.29 16 18 N -0.41 -6.72 4.05 -65.47 -0.27 -6.99 16 19 C 0.11 1.24 11.40 59.85 0.68 1.92 16 20 C 0.13 2.06 6.87 -84.18 -0.58 1.49 16 21 C -0.15 -1.86 9.97 -39.79 -0.40 -2.26 16 22 C -0.07 -0.84 9.96 -39.91 -0.40 -1.24 16 23 C -0.17 -2.09 9.97 -39.95 -0.40 -2.49 16 24 C -0.03 -0.47 10.07 -39.58 -0.40 -0.87 16 25 C -0.16 -2.85 6.33 -105.20 -0.67 -3.52 16 26 H 0.21 2.62 7.80 -54.10 -0.42 2.20 16 27 H 0.10 2.05 3.62 -51.93 -0.19 1.86 16 28 H 0.09 1.38 6.70 -51.93 -0.35 1.03 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 30 H 0.10 1.55 7.42 -51.93 -0.39 1.16 16 31 H 0.10 1.74 7.48 -51.93 -0.39 1.35 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -35.97 334.29 -5.73 -41.71 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.26 Total: 5.35 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.02 Total: -5.48 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.69 Total: -46.75 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.26 Total: 15.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.97 -5.73 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491654611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.643 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds