Wall clock time and date at job start Tue Mar 31 2020 08:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42891 * 113.99905 * 2 1 4 4 C 1.53003 * 109.47140 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47114 * 66.67260 * 4 3 2 6 6 C 1.46900 * 111.00234 * 283.16726 * 5 4 3 7 7 C 1.50707 * 109.46840 * 304.97910 * 6 5 4 8 8 H 1.08003 * 119.99435 * 355.03220 * 7 6 5 9 9 C 1.37870 * 120.00171 * 175.03424 * 7 6 5 10 10 N 1.31513 * 120.00115 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00089 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47198 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47060 * 120.00003 * 11 9 7 14 14 H 1.48494 * 109.47266 * 239.99845 * 11 9 7 15 15 C 1.46898 * 111.00269 * 159.20819 * 5 4 3 16 16 C 1.53007 * 109.47058 * 199.82629 * 15 5 4 17 17 C 1.50703 * 109.46435 * 183.77473 * 16 15 5 18 18 C 1.38265 * 119.99156 * 269.71546 * 17 16 15 19 19 C 1.38214 * 120.02423 * 179.77225 * 18 17 16 20 20 C 1.38241 * 120.01569 * 0.51053 * 19 18 17 21 21 C 1.38328 * 119.98147 * 359.75083 * 20 19 18 22 22 Cl 1.73604 * 120.00988 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99458 * 90.00590 * 17 16 15 24 24 H 1.08994 * 109.46980 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46522 * 300.00311 * 1 2 3 26 26 H 1.08998 * 109.46938 * 60.00224 * 1 2 3 27 27 H 1.09000 * 109.47645 * 60.00099 * 3 2 1 28 28 H 1.09000 * 109.47496 * 299.99960 * 3 2 1 29 29 H 1.08997 * 109.47235 * 306.67658 * 4 3 2 30 30 H 1.08994 * 109.47254 * 186.67083 * 4 3 2 31 31 H 1.08995 * 109.47331 * 64.97510 * 6 5 4 32 32 H 1.09000 * 109.47224 * 184.98183 * 6 5 4 33 33 H 0.96998 * 120.00633 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.46944 * 319.82688 * 15 5 4 35 35 H 1.08997 * 109.47021 * 79.82535 * 15 5 4 36 36 H 1.09000 * 109.46665 * 303.77116 * 16 15 5 37 37 H 1.08994 * 109.46940 * 63.77546 * 16 15 5 38 38 H 1.08002 * 119.98655 * 0.02562 * 18 17 16 39 39 H 1.08003 * 119.99342 * 180.26246 * 19 18 17 40 40 H 1.07997 * 120.01036 * 179.76210 * 20 19 18 41 41 H 1.08005 * 120.00653 * 359.94452 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9809 0.5990 -1.2708 6 6 3.7467 -0.8510 -1.2933 7 6 4.4101 -1.4856 -0.0981 8 1 5.0181 -0.8863 0.5634 9 6 4.2408 -2.8310 0.1508 10 7 3.4999 -3.5606 -0.6544 11 14 5.0636 -3.6177 1.6319 12 1 5.8368 -2.5890 2.3730 13 1 4.0275 -4.1971 2.5242 14 1 5.9811 -4.6924 1.1757 15 6 5.3941 0.9080 -1.5265 16 6 5.6924 0.7350 -3.0172 17 6 7.1616 0.9616 -3.2649 18 6 7.6248 2.2301 -3.5616 19 6 8.9727 2.4396 -3.7843 20 6 9.8571 1.3790 -3.7209 21 6 9.3934 0.1088 -3.4294 22 17 10.5035 -1.2235 -3.3489 23 6 8.0446 -0.0994 -3.2014 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8490 0.5442 0.8251 30 1 3.9783 2.1734 0.1200 31 1 2.6749 -1.0465 -1.2603 32 1 4.1650 -1.2725 -2.2074 33 1 3.3805 -4.5071 -0.4791 34 1 5.6000 1.9370 -1.2318 35 1 6.0241 0.2317 -0.9489 36 1 5.4233 -0.2749 -3.3266 37 1 5.1116 1.4576 -3.5902 38 1 6.9337 3.0583 -3.6153 39 1 9.3346 3.4314 -4.0118 40 1 10.9098 1.5421 -3.8987 41 1 7.6821 -1.0909 -2.9734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590952913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:56 Heat of formation + Delta-G solvation = -28.599918 kcal Electronic energy + Delta-G solvation = -21837.093925 eV Core-core repulsion = 18549.806319 eV Total energy + Delta-G solvation = -3287.287606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.35323 -37.73284 -36.49281 -36.04519 -33.02879 -32.19594 -30.64034 -29.52025 -27.86321 -26.26646 -25.23010 -23.30070 -22.59947 -22.27283 -20.66456 -19.49937 -16.86922 -16.36542 -15.88523 -15.63313 -15.46953 -15.25689 -14.70756 -14.17306 -14.08478 -13.84043 -13.60266 -13.44603 -12.84846 -12.62173 -12.51562 -11.99627 -11.66208 -11.42325 -11.35760 -11.24971 -11.07769 -11.00421 -10.81497 -10.72009 -10.61915 -10.41456 -10.19432 -10.01306 -9.67633 -9.40630 -8.91514 -8.76017 -8.54563 -8.21956 -7.09858 -5.88511 -3.93249 1.24467 1.36753 2.21542 3.33657 3.41737 3.44354 3.71215 4.51448 4.54538 4.76712 4.87111 5.07227 5.23288 5.40003 5.43424 5.47843 5.60231 5.67859 5.79518 5.83592 5.91000 5.95577 5.97949 6.02030 6.09705 6.18370 6.28024 6.31216 6.33802 6.40305 6.50226 6.72480 6.83892 6.90069 6.94738 7.38578 7.76185 7.94413 8.12171 8.16129 8.43955 8.46656 9.15551 9.70211 11.17573 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.004619 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.521908 B = 6059.987614 C = 7706.987127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.182 3.818 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.880 3.120 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.065 3.935 16 C -0.076 4.076 17 C -0.052 4.052 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.032 4.032 22 Cl -0.078 7.078 23 C -0.103 4.103 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.258 0.742 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 11.976 -4.984 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.004 4.004 4 C -0.073 4.073 5 N -0.264 5.264 6 C 0.057 3.943 7 C -0.572 4.572 8 H 0.069 0.931 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.708 3.292 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.063 4.063 16 C -0.113 4.113 17 C -0.053 4.053 18 C -0.134 4.134 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.058 4.058 22 Cl -0.050 7.050 23 C -0.122 4.122 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.639 11.713 -5.379 14.069 hybrid contribution 0.873 -0.870 1.584 2.007 sum 6.512 10.843 -3.795 13.206 Atomic orbital electron populations 1.22638 0.83473 1.02087 0.98387 1.88338 1.17357 1.26490 1.94791 1.22473 0.94573 0.85212 0.98163 1.22039 0.92816 0.98212 0.94258 1.62520 1.16055 1.17107 1.30754 1.19988 0.99221 0.79817 0.95282 1.21634 1.30223 0.94057 1.11276 0.93050 1.24842 0.95144 0.97385 0.95993 1.69947 1.38959 1.06663 1.37267 0.86742 0.79348 0.79472 0.83618 1.20074 1.21116 1.21197 1.21888 0.91401 0.99013 0.94019 1.20629 0.89017 1.03670 0.98020 1.20061 0.96652 0.92392 0.96232 1.21186 0.95548 0.96872 0.99813 1.21037 0.93219 0.98395 1.00231 1.20951 1.00288 0.91048 1.02104 1.20936 0.91003 0.88978 1.04891 1.98362 1.62652 1.47041 1.96906 1.21152 0.90776 1.00726 0.99530 0.90204 0.95449 0.95050 0.94781 0.93865 0.91777 0.92220 0.91906 0.96293 0.93228 0.93264 0.93463 0.89974 0.90833 0.85525 0.85509 0.85508 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.35 8.00 -35.23 -0.28 -7.63 16 3 C 0.07 1.29 6.25 37.16 0.23 1.53 16 4 C 0.06 1.06 5.34 -3.82 -0.02 1.04 16 5 N -0.54 -11.15 4.56 -236.07 -1.08 -12.23 16 6 C 0.18 4.60 4.66 -4.97 -0.02 4.57 16 7 C -0.53 -14.52 7.13 -34.44 -0.25 -14.77 16 8 H 0.05 1.41 6.15 -52.48 -0.32 1.08 16 9 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 11 Si 0.88 21.88 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.07 1.20 4.84 -3.82 -0.02 1.18 16 16 C -0.08 -1.23 5.51 -27.88 -0.15 -1.38 16 17 C -0.05 -0.77 5.13 -104.63 -0.54 -1.30 16 18 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 19 C -0.11 -1.22 10.05 -39.59 -0.40 -1.61 16 20 C -0.13 -1.49 9.83 -39.55 -0.39 -1.88 16 21 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 22 Cl -0.08 -1.06 28.96 -51.86 -1.50 -2.56 16 23 C -0.10 -1.59 9.49 -39.55 -0.38 -1.96 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.41 5.84 -51.93 -0.30 1.11 16 30 H 0.06 0.96 7.57 -51.93 -0.39 0.57 16 31 H 0.06 1.75 5.80 -51.93 -0.30 1.45 16 32 H 0.02 0.51 6.61 -51.93 -0.34 0.17 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.05 0.80 7.58 -51.93 -0.39 0.41 16 35 H 0.05 0.99 6.72 -51.93 -0.35 0.64 16 36 H 0.08 1.51 6.65 -51.93 -0.35 1.16 16 37 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.14 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -30.10 348.64 -9.55 -39.65 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.11 Total: -0.11 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.55 Total: -13.63 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.34 Total: -37.82 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.28 Total: -7.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.10 -9.55 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590952913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.052 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds