Wall clock time and date at job start Tue Mar 31 2020 07:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35962 * 116.99479 * 2 1 4 4 C 1.39112 * 119.93527 * 359.97438 * 3 2 1 5 5 C 1.37790 * 120.61722 * 179.97438 * 4 3 2 6 6 C 1.39170 * 120.03674 * 0.03883 * 5 4 3 7 7 N 1.38289 * 120.49942 * 180.24983 * 6 5 4 8 8 H 0.97000 * 118.63539 * 0.02562 * 7 6 5 9 9 C 1.35029 * 122.73789 * 180.25229 * 7 6 5 10 10 C 1.36459 * 122.32233 * 359.46715 * 9 7 6 11 11 C 1.43194 * 120.50245 * 180.23615 * 10 9 7 12 12 N 8.42570 * 148.88256 * 0.02562 * 2 1 3 13 13 C 1.47867 * 118.99243 * 0.25915 * 10 9 7 14 14 N 1.31145 * 121.39237 * 179.97438 * 13 10 9 15 15 C 1.46501 * 120.00063 * 353.92287 * 14 13 10 16 16 C 1.52995 * 109.47064 * 185.08311 * 15 14 13 17 17 C 1.50705 * 109.47154 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99623 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00040 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99635 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47224 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46752 * 120.00306 * 21 19 17 24 24 H 1.48500 * 109.47152 * 239.99946 * 21 19 17 25 25 C 1.40311 * 119.32806 * 359.97438 * 6 5 4 26 26 C 1.38330 * 119.93228 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47398 * 299.99978 * 1 2 3 28 28 H 1.09003 * 109.47228 * 60.00658 * 1 2 3 29 29 H 1.09005 * 109.46587 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.69060 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.98523 * 180.02562 * 5 4 3 32 32 H 1.08001 * 118.83395 * 179.74875 * 9 7 6 33 33 H 1.09001 * 109.47001 * 305.08358 * 15 14 13 34 34 H 1.09002 * 109.46887 * 65.08240 * 15 14 13 35 35 H 1.09001 * 109.47250 * 299.99895 * 16 15 14 36 36 H 1.08994 * 109.47443 * 59.99898 * 16 15 14 37 37 H 0.97000 * 119.99914 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.21545 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2871 2.3773 -0.0005 5 6 1.8978 3.6124 0.0000 6 6 3.2866 3.7028 0.0002 7 7 3.9096 4.9374 0.0060 8 1 3.3589 5.7359 0.0102 9 6 5.2526 5.0777 0.0015 10 6 6.0981 4.0066 0.0016 11 6 7.5168 4.2005 0.0018 12 7 8.6423 4.3544 0.0019 13 6 5.5269 2.6426 0.0010 14 7 6.2957 1.5801 0.0007 15 6 7.7472 1.7262 -0.1335 16 6 8.3921 0.3423 -0.2318 17 6 9.8853 0.4926 -0.3692 18 1 10.3297 1.4768 -0.3853 19 6 10.6840 -0.6264 -0.4744 20 7 10.1428 -1.8248 -0.4544 21 14 12.5348 -0.4400 -0.6455 22 1 12.8897 1.0020 -0.6408 23 1 13.2077 -1.1186 0.4912 24 1 12.9784 -1.0553 -1.9221 25 6 4.0519 2.5267 0.0005 26 6 3.4276 1.2824 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2090 2.3136 -0.0014 31 1 1.2986 4.5109 0.0000 32 1 5.6723 6.0728 0.0023 33 1 7.9731 2.2972 -1.0341 34 1 8.1416 2.2499 0.7373 35 1 8.1661 -0.2286 0.6687 36 1 7.9976 -0.1814 -1.1025 37 1 10.7047 -2.6120 -0.5288 38 1 4.0182 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591931512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:00 Heat of formation + Delta-G solvation = 32.021171 kcal Electronic energy + Delta-G solvation = -22401.051268 eV Core-core repulsion = 19015.284895 eV Total energy + Delta-G solvation = -3385.766372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82780 -40.20510 -38.58481 -37.14767 -36.48027 -35.43373 -33.34876 -31.70112 -31.38882 -30.03760 -27.98987 -26.92239 -24.90305 -24.50244 -23.16554 -22.13881 -20.80221 -19.27433 -18.90350 -18.62711 -17.99485 -16.97940 -16.61094 -16.60588 -16.34039 -16.23473 -15.68729 -15.26512 -15.03284 -14.72048 -14.34996 -14.34480 -14.24195 -13.86670 -13.79975 -13.41492 -13.21494 -13.19257 -13.02166 -12.86510 -12.63013 -12.51610 -11.84549 -11.77146 -11.69322 -11.65869 -11.39505 -10.66923 -10.04653 -9.89502 -9.55025 -8.29392 -8.18000 -6.42904 -0.14153 -0.11363 0.76364 1.29433 1.32545 1.47080 1.61451 1.67844 2.00028 2.32797 2.46277 2.48414 2.97912 3.01714 3.05302 3.28090 3.60835 3.80187 4.01098 4.08549 4.29191 4.34841 4.36534 4.43717 4.48408 4.53194 4.58145 4.78817 4.84699 4.93743 5.01087 5.15832 5.30988 5.32343 5.35570 5.52239 5.54327 5.71148 5.90232 6.13018 6.43742 6.54310 6.69834 6.71387 7.02177 7.26805 8.83977 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003798 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.325322 B = 7370.489073 C = 9056.074873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.346 6.346 3 C 0.096 3.904 4 C -0.149 4.149 5 C -0.090 4.090 6 C 0.131 3.869 7 N -0.575 5.575 8 H 0.451 0.549 9 C 0.290 3.710 10 C -0.258 4.258 11 C 0.288 3.712 12 N -0.492 5.492 13 C 0.241 3.759 14 N -0.580 5.580 15 C 0.082 3.918 16 C 0.049 3.951 17 C -0.548 4.548 18 H 0.049 0.951 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.974 3.026 22 H -0.269 1.269 23 H -0.268 1.268 24 H -0.267 1.267 25 C -0.056 4.056 26 C -0.113 4.113 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.225 0.775 33 H 0.036 0.964 34 H 0.037 0.963 35 H -0.014 1.014 36 H -0.013 1.013 37 H 0.267 0.733 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.455 19.480 1.057 36.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.261 6.261 3 C 0.050 3.950 4 C -0.169 4.169 5 C -0.110 4.110 6 C 0.030 3.970 7 N -0.184 5.184 8 H 0.294 0.706 9 C 0.148 3.852 10 C -0.275 4.275 11 C -0.024 4.024 12 N -0.171 5.171 13 C 0.058 3.942 14 N -0.292 5.292 15 C -0.048 4.048 16 C 0.012 3.988 17 C -0.586 4.586 18 H 0.068 0.932 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.796 3.204 22 H -0.194 1.194 23 H -0.193 1.193 24 H -0.192 1.192 25 C -0.059 4.059 26 C -0.134 4.134 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.192 0.808 31 H 0.212 0.788 32 H 0.242 0.758 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.004 0.996 36 H 0.005 0.995 37 H 0.076 0.924 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -28.553 18.252 1.105 33.906 hybrid contribution 1.252 -0.106 -0.099 1.260 sum -27.301 18.146 1.006 32.797 Atomic orbital electron populations 1.23401 0.75970 1.05471 1.02938 1.86129 1.23945 1.27088 1.88895 1.18993 0.91103 0.85920 0.98947 1.21541 1.01885 0.90312 1.03177 1.20942 0.89749 0.99813 1.00487 1.17713 0.92789 0.83803 1.02648 1.40973 1.04717 1.07886 1.64872 0.70574 1.21848 0.82197 0.99542 0.81562 1.16701 0.84681 0.94681 1.31427 1.25289 0.92600 0.92476 0.92045 1.81350 1.12661 1.09418 1.13632 1.21579 0.92934 0.87728 0.91938 1.72515 1.05994 1.30980 1.19717 1.21985 0.87243 0.98276 0.97260 1.18705 0.94062 0.91620 0.94444 1.21518 0.92955 0.92900 1.51265 0.93239 1.26048 1.04812 0.94519 0.94215 1.70136 1.37611 0.98427 1.50715 0.85289 0.78060 0.78451 0.78559 1.19356 1.19329 1.19215 1.17933 0.88710 0.92986 1.06315 1.20198 0.92725 0.97352 1.03102 0.90675 0.90723 0.87445 0.80767 0.78808 0.75834 0.94576 0.94487 0.99589 0.99485 0.92374 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.35 -7.73 10.49 -93.13 -0.98 -8.70 16 3 C 0.10 2.09 6.68 22.50 0.15 2.24 16 4 C -0.15 -1.59 9.01 22.37 0.20 -1.39 16 5 C -0.09 -0.59 9.86 22.39 0.22 -0.37 16 6 C 0.13 1.81 6.67 38.85 0.26 2.07 16 7 N -0.58 -3.28 5.27 -187.12 -0.99 -4.27 16 8 H 0.45 -2.60 8.74 -92.71 -0.81 -3.41 16 9 C 0.29 3.32 10.77 83.79 0.90 4.22 16 10 C -0.26 -7.31 5.88 -19.90 -0.12 -7.43 16 11 C 0.29 10.73 10.97 88.33 0.97 11.70 16 12 N -0.49 -21.66 17.33 19.00 0.33 -21.33 16 13 C 0.24 8.82 6.99 44.38 0.31 9.13 16 14 N -0.58 -28.54 9.95 -329.00 -3.27 -31.81 16 15 C 0.08 4.58 4.10 86.38 0.35 4.93 16 16 C 0.05 3.27 5.30 29.85 0.16 3.43 16 17 C -0.55 -37.13 9.11 25.60 0.23 -36.89 16 18 H 0.05 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -62.98 13.29 21.45 0.28 -62.69 16 21 Si 0.97 49.95 29.54 68.60 2.03 51.98 16 22 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 25 C -0.06 -1.53 5.89 -19.96 -0.12 -1.64 16 26 C -0.11 -3.42 9.57 22.53 0.22 -3.21 16 27 H 0.07 0.42 7.65 -2.39 -0.02 0.41 16 28 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 29 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.18 0.50 6.26 -2.91 -0.02 0.48 16 31 H 0.19 -0.88 8.06 -2.91 -0.02 -0.90 16 32 H 0.23 0.17 8.05 -2.91 -0.02 0.15 16 33 H 0.04 2.05 6.59 -2.39 -0.02 2.04 16 34 H 0.04 2.12 6.23 -2.39 -0.01 2.11 16 35 H -0.01 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 38 H 0.11 4.16 7.71 -2.91 -0.02 4.14 16 Total: -1.00 -105.19 330.69 3.02 -102.16 By element: Atomic # 1 Polarization: -14.30 SS G_CDS: 0.30 Total: -14.00 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.31 Total: -11.34 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -3.65 Total: -120.11 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.98 Total: -8.70 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.03 Total: 51.98 kcal Total: -105.19 3.02 -102.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591931512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.185 kcal (2) G-P(sol) polarization free energy of solvation -105.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds