Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47135 * 64.99661 * 16 15 14 18 18 C 1.35901 * 117.00349 * 180.02562 * 17 16 15 19 19 C 1.38765 * 120.04749 * 359.72110 * 18 17 16 20 20 C 1.38125 * 119.97212 * 179.75139 * 19 18 17 21 21 C 1.38271 * 120.06617 * 0.55047 * 20 19 18 22 22 C 1.38358 * 120.09714 * 359.70765 * 21 20 19 23 23 Cl 1.73598 * 119.98364 * 180.02562 * 22 21 20 24 24 C 1.38282 * 120.03347 * 0.02562 * 22 21 20 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.08997 * 109.47390 * 185.00282 * 16 15 14 37 37 H 1.09004 * 109.47097 * 305.00370 * 16 15 14 38 38 H 1.08000 * 120.01120 * 0.02875 * 19 18 17 39 39 H 1.08002 * 119.96595 * 180.25918 * 20 19 18 40 40 H 1.07995 * 119.94872 * 179.72716 * 21 20 19 41 41 H 1.08003 * 120.03552 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 8 0.2779 0.1956 4.9902 18 6 -0.2651 0.8833 6.0290 19 6 0.5576 1.5360 6.9360 20 6 0.0038 2.2387 7.9883 21 6 -1.3692 2.2831 8.1455 22 6 -2.1920 1.6289 7.2458 23 17 -3.9155 1.6871 7.4455 24 6 -1.6422 0.9287 6.1877 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.8938 -0.0449 -5.6799 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.6528 0.1793 2.4752 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1301 -0.2521 5.7887 37 1 2.0628 1.2151 4.7832 38 1 1.6303 1.4982 6.8166 39 1 0.6441 2.7502 8.6918 40 1 -1.8000 2.8294 8.9714 41 1 -2.2844 0.4183 5.4852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602522682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -55.697049 kcal Electronic energy + Delta-G solvation = -20653.548669 eV Core-core repulsion = 17365.086043 eV Total energy + Delta-G solvation = -3288.462626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17883 -39.01056 -38.24535 -37.27115 -35.66062 -34.08508 -32.05366 -31.14313 -30.15181 -28.95108 -26.67221 -24.53900 -23.68347 -23.51805 -22.20225 -20.64015 -19.45670 -18.94699 -17.28769 -17.20258 -17.05515 -16.74926 -16.28491 -15.95949 -15.60144 -15.19380 -15.01081 -14.76724 -14.58001 -14.24920 -14.14540 -13.66006 -13.47159 -13.17127 -12.83488 -12.82279 -12.73084 -12.60365 -12.49460 -12.14572 -12.09051 -11.85375 -11.75675 -11.69746 -11.45615 -11.16706 -11.03161 -10.73332 -9.88828 -9.35758 -9.27255 -8.25516 -6.28016 0.10146 0.33340 1.02477 1.36351 1.38207 1.50116 2.24705 2.38325 2.62149 3.09623 3.21425 3.75098 3.94804 4.05341 4.12610 4.16347 4.19030 4.27167 4.28558 4.38923 4.40803 4.44012 4.68821 4.74884 4.81836 4.83123 4.88418 5.00144 5.04817 5.14517 5.26634 5.29097 5.34561 5.36895 5.54153 5.58299 5.68705 5.73344 6.08538 6.34680 6.36972 6.45673 6.79745 7.35399 8.91367 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.002332 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.949546 B =12005.004422 C =12725.721416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.053 0.947 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.033 0.967 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.245 1.245 13 C 0.074 3.926 14 N -0.696 5.696 15 C 0.059 3.941 16 C 0.061 3.939 17 O -0.330 6.330 18 C 0.134 3.866 19 C -0.206 4.206 20 C -0.063 4.063 21 C -0.155 4.155 22 C -0.007 4.007 23 Cl -0.068 7.068 24 C -0.168 4.168 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 0.001 31.937 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.168 1.168 13 C -0.055 4.055 14 N -0.329 5.329 15 C -0.070 4.070 16 C -0.014 4.014 17 O -0.244 6.244 18 C 0.088 3.912 19 C -0.225 4.225 20 C -0.081 4.081 21 C -0.174 4.174 22 C -0.034 4.034 23 Cl -0.039 7.039 24 C -0.187 4.187 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.057 0.943 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.184 0.816 40 H 0.169 0.831 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.596 0.311 31.597 31.639 hybrid contribution -0.602 -1.058 -0.902 1.515 sum -2.198 -0.747 30.695 30.782 Atomic orbital electron populations 1.21659 0.95718 1.00852 1.00442 1.20895 0.95684 0.99121 0.93374 0.92887 1.19559 0.96132 0.95581 0.93123 1.21465 1.34300 1.08637 0.91317 0.94891 1.26041 0.97070 1.01098 0.95504 1.70086 1.49135 1.41691 0.98716 0.85660 0.79316 0.79324 0.78340 1.19411 1.21204 1.16792 1.21911 1.00397 0.94325 0.88895 1.60554 1.20555 1.50192 1.01562 1.22120 1.01722 0.95386 0.87796 1.23107 0.77240 1.02078 0.98938 1.86036 1.24656 1.68444 1.45220 1.18937 0.92134 0.92324 0.87844 1.21688 1.01343 1.02357 0.97118 1.21298 0.94214 0.95891 0.96677 1.21264 0.93663 1.02079 1.00402 1.20721 0.85054 1.00464 0.97165 1.98379 1.11121 1.97384 1.96982 1.20316 0.93154 1.04876 1.00370 0.93322 0.92113 0.94717 0.96239 0.96538 0.92701 0.95068 0.90849 0.83665 0.94289 0.87404 0.88869 0.90432 0.82803 0.81635 0.83067 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.77 71.98 0.63 -4.21 16 2 C -0.07 -2.80 2.55 -10.79 -0.03 -2.83 16 3 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 5 C -0.52 -30.18 8.96 25.60 0.23 -29.95 16 6 H 0.03 2.12 7.30 -2.91 -0.02 2.10 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 9 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 13 C 0.07 2.22 5.14 86.30 0.44 2.67 16 14 N -0.70 -17.96 6.50 -513.89 -3.34 -21.30 16 15 C 0.06 1.09 6.11 86.30 0.53 1.62 16 16 C 0.06 0.95 5.08 71.98 0.37 1.31 16 17 O -0.33 -6.82 9.66 -92.44 -0.89 -7.71 16 18 C 0.13 2.57 6.69 22.50 0.15 2.72 16 19 C -0.21 -2.90 9.04 22.37 0.20 -2.70 16 20 C -0.06 -0.72 10.04 22.25 0.22 -0.50 16 21 C -0.16 -2.13 9.83 22.31 0.22 -1.91 16 22 C -0.01 -0.13 6.32 22.31 0.14 0.01 16 23 Cl -0.07 -1.18 28.95 -2.72 -0.08 -1.26 16 24 C -0.17 -3.39 9.77 22.39 0.22 -3.17 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.94 6.68 -2.39 -0.02 1.92 16 27 H 0.03 1.50 6.95 -2.39 -0.02 1.49 16 28 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 29 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.34 9.27 6.54 -89.69 -0.59 8.68 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 0.95 7.65 -2.39 -0.02 0.93 16 37 H 0.08 1.17 7.67 -2.38 -0.02 1.16 16 38 H 0.15 1.47 6.30 -2.91 -0.02 1.46 16 39 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -68.59 349.76 2.14 -66.45 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.38 Total: 14.58 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.89 Total: -36.73 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.04 Total: -81.96 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.89 Total: -7.71 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -68.59 2.14 -66.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.753 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds