Wall clock time and date at job start Tue Mar 31 2020 07:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00171 * 2 1 4 4 C 1.50696 * 109.47329 * 270.00168 * 3 2 1 5 5 H 1.07998 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00104 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99942 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46828 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46819 * 119.99709 * 8 6 4 11 11 H 1.48496 * 109.47300 * 240.00314 * 8 6 4 12 12 C 1.34783 * 120.00161 * 179.97438 * 2 1 3 13 13 O 1.21566 * 120.00141 * 184.31074 * 12 2 1 14 14 C 1.47694 * 120.00000 * 4.31385 * 12 2 1 15 15 C 1.40088 * 120.86052 * 149.85191 * 14 12 2 16 16 N 1.31949 * 119.01890 * 180.02562 * 15 14 12 17 17 C 1.32720 * 120.88839 * 359.97438 * 16 15 14 18 18 C 1.48184 * 119.04962 * 179.97438 * 17 16 15 19 19 C 1.39453 * 120.13028 * 359.97438 * 18 17 16 20 20 C 1.37988 * 119.86803 * 180.02562 * 19 18 17 21 21 C 1.38351 * 120.13022 * 0.02562 * 20 19 18 22 22 C 1.38349 * 120.26288 * 0.02562 * 21 20 19 23 23 C 1.37982 * 120.13234 * 0.02562 * 22 21 20 24 24 N 1.32727 * 121.90136 * 0.25917 * 17 16 15 25 25 C 1.31943 * 120.88952 * 359.47742 * 24 17 16 26 26 H 1.08998 * 109.47099 * 272.74782 * 1 2 3 27 27 H 1.08998 * 109.47105 * 32.75116 * 1 2 3 28 28 H 1.09007 * 109.46727 * 152.74972 * 1 2 3 29 29 H 1.09003 * 109.46882 * 29.99656 * 3 2 1 30 30 H 1.09002 * 109.47373 * 149.99534 * 3 2 1 31 31 H 0.97005 * 119.99524 * 179.97438 * 7 6 4 32 32 H 1.07994 * 120.49094 * 359.97438 * 15 14 12 33 33 H 1.07998 * 120.06422 * 0.03007 * 19 18 17 34 34 H 1.07991 * 119.93914 * 180.27754 * 20 19 18 35 35 H 1.07989 * 119.86601 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.92801 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.05959 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.48981 * 180.25482 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5525 3.6185 -0.6731 8 14 3.4380 3.4169 -3.4339 9 1 2.8608 2.4164 -4.3672 10 1 2.7998 4.7372 -3.6679 11 1 4.9005 3.5257 -3.6666 12 6 2.1389 -1.1672 0.0005 13 8 3.3520 -1.1687 0.0797 14 6 1.4036 -2.4446 -0.0951 15 6 1.9845 -3.5642 -0.7046 16 7 1.2947 -4.6870 -0.7706 17 6 0.0682 -4.7637 -0.2692 18 6 -0.6700 -6.0449 -0.3661 19 6 -0.0778 -7.1495 -0.9775 20 6 -0.7703 -8.3398 -1.0652 21 6 -2.0500 -8.4384 -0.5487 22 6 -2.6432 -7.3456 0.0579 23 6 -1.9609 -6.1498 0.1507 24 7 -0.5183 -3.7243 0.3116 25 6 0.1073 -2.5678 0.4218 26 1 -0.3633 0.0493 1.0265 27 1 -0.3633 0.8643 -0.5559 28 1 -0.3633 -0.9137 -0.4706 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 4.0293 4.4444 -0.8504 32 1 2.9819 -3.5089 -1.1150 33 1 0.9210 -7.0735 -1.3813 34 1 -0.3111 -9.1972 -1.5344 35 1 -2.5883 -9.3718 -0.6201 36 1 -3.6426 -7.4285 0.4590 37 1 -2.4253 -5.2974 0.6242 38 1 -0.3745 -1.7275 0.8992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604529927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:35 Heat of formation + Delta-G solvation = 41.219824 kcal Electronic energy + Delta-G solvation = -22343.111223 eV Core-core repulsion = 18957.743735 eV Total energy + Delta-G solvation = -3385.367489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49612 -40.56901 -39.63141 -36.92363 -35.24864 -34.78830 -34.08006 -31.84401 -31.45243 -29.69602 -27.97132 -26.45413 -25.73020 -24.69390 -23.14258 -22.75892 -20.97432 -19.06624 -18.85193 -18.72755 -18.08244 -17.21877 -17.04926 -16.52578 -16.23792 -15.83393 -15.76024 -15.53603 -14.95824 -14.82121 -14.53031 -14.31052 -14.25168 -13.91617 -13.66608 -13.44359 -13.00757 -12.90805 -12.81293 -12.58256 -12.25960 -12.23041 -11.98592 -11.95536 -11.73122 -11.19525 -10.84104 -10.66417 -10.49244 -9.86602 -9.63405 -9.49538 -8.25318 -6.39786 -0.99194 -0.15731 0.47765 0.50167 1.36308 1.38494 1.49774 1.71689 2.11065 2.38030 2.50952 2.58066 2.86756 3.00785 3.05229 3.30535 3.42793 3.79769 3.88544 4.06988 4.15045 4.18176 4.31860 4.48906 4.53760 4.56598 4.71974 4.83178 4.89831 4.96845 5.04986 5.17113 5.19478 5.46927 5.49204 5.54736 5.59759 5.69260 5.74757 6.01141 6.03269 6.52381 6.68690 6.76172 7.13378 7.32797 8.82211 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.002920 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.975895 B = 9588.091234 C = 9768.014244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.595 5.595 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.554 3.446 13 O -0.582 6.582 14 C -0.247 4.247 15 C 0.205 3.795 16 N -0.524 5.524 17 C 0.363 3.637 18 C -0.081 4.081 19 C -0.081 4.081 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.132 4.132 23 C -0.076 4.076 24 N -0.516 5.516 25 C 0.183 3.817 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.006 0.994 31 H 0.268 0.732 32 H 0.182 0.818 33 H 0.130 0.870 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -21.929 1.094 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.325 5.325 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.193 1.193 10 H -0.194 1.194 11 H -0.207 1.207 12 C 0.341 3.659 13 O -0.464 6.464 14 C -0.255 4.255 15 C 0.038 3.962 16 N -0.237 5.237 17 C 0.100 3.900 18 C -0.083 4.083 19 C -0.101 4.101 20 C -0.152 4.152 21 C -0.109 4.109 22 C -0.150 4.150 23 C -0.095 4.095 24 N -0.230 5.230 25 C 0.016 3.984 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.199 0.801 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.431 -22.553 1.115 27.350 hybrid contribution 1.384 1.810 -0.699 2.383 sum -14.047 -20.744 0.415 25.056 Atomic orbital electron populations 1.22602 0.78147 1.04256 1.03382 1.48044 1.08394 1.06147 1.69877 1.18905 0.91521 0.79525 0.96352 1.21695 1.37154 1.06665 0.92906 0.92920 1.25810 0.94830 0.96370 1.01848 1.70042 1.38733 1.14792 1.32888 0.85383 0.77915 0.78406 0.79199 1.19321 1.19377 1.20709 1.18153 0.86650 0.83827 0.77228 1.90740 1.15500 1.87669 1.52474 1.21707 0.99023 0.96572 1.08184 1.23482 0.98979 0.85516 0.88262 1.68495 1.08277 1.26633 1.20294 1.22063 0.87342 0.93310 0.87243 1.18266 0.95255 0.89607 1.05141 1.21470 1.00382 0.92161 0.96084 1.21453 0.95503 0.97499 1.00703 1.21799 0.94752 0.99696 0.94671 1.21487 1.01364 0.92084 1.00047 1.21493 0.92341 0.99288 0.96419 1.68535 1.37075 0.99760 1.17604 1.24648 0.88604 0.95499 0.89642 0.88825 0.90320 0.89431 0.94684 0.97586 0.92281 0.80145 0.85220 0.83120 0.82522 0.82742 0.84406 0.76648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.63 8.80 127.77 1.12 2.75 16 2 N -0.60 -24.69 2.86 -854.75 -2.44 -27.13 16 3 C 0.26 13.51 5.21 85.63 0.45 13.95 16 4 C -0.55 -30.84 9.39 25.60 0.24 -30.60 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.62 5.46 84.66 0.46 1.08 16 7 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.55 23.47 7.48 86.74 0.65 24.12 16 13 O -0.58 -30.12 16.35 -3.92 -0.06 -30.19 16 14 C -0.25 -8.17 5.53 -19.88 -0.11 -8.28 16 15 C 0.20 6.52 10.89 85.12 0.93 7.45 16 16 N -0.52 -15.67 9.42 -188.16 -1.77 -17.45 16 17 C 0.36 10.14 7.55 137.42 1.04 11.18 16 18 C -0.08 -1.87 5.88 -20.05 -0.12 -1.99 16 19 C -0.08 -1.64 9.56 22.50 0.22 -1.42 16 20 C -0.13 -1.87 10.03 22.24 0.22 -1.65 16 21 C -0.09 -1.03 10.04 22.32 0.22 -0.80 16 22 C -0.13 -1.72 10.03 22.24 0.22 -1.49 16 23 C -0.08 -1.41 9.56 22.50 0.22 -1.20 16 24 N -0.52 -13.76 9.42 -188.15 -1.77 -15.54 16 25 C 0.18 4.86 8.76 85.13 0.75 5.60 16 26 H 0.09 1.97 7.40 -2.39 -0.02 1.95 16 27 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 28 H 0.09 2.12 4.77 -2.38 -0.01 2.10 16 29 H 0.04 1.82 8.07 -2.39 -0.02 1.81 16 30 H 0.01 0.36 7.37 -2.39 -0.02 0.35 16 31 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 32 H 0.18 5.57 7.99 -2.91 -0.02 5.55 16 33 H 0.13 2.72 7.50 -2.91 -0.02 2.70 16 34 H 0.15 1.33 8.06 -2.92 -0.02 1.31 16 35 H 0.16 0.76 8.06 -2.92 -0.02 0.73 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.14 2.48 7.50 -2.91 -0.02 2.46 16 38 H 0.22 4.42 4.71 -2.91 -0.01 4.40 16 Total: -1.00 -74.29 330.05 3.86 -70.43 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.09 Total: 9.40 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 6.50 Total: 18.69 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -5.70 Total: -114.70 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.29 3.86 -70.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.650 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds