Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00382 * 2 1 4 4 C 1.52994 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47440 * 64.99549 * 4 3 2 6 6 C 1.46496 * 120.00488 * 270.00488 * 5 4 3 7 7 C 1.50700 * 109.47266 * 269.99818 * 6 5 4 8 8 H 1.08003 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00283 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99873 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00012 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46562 * 120.00573 * 11 9 7 14 14 H 1.48493 * 109.46988 * 240.00548 * 11 9 7 15 15 C 1.34784 * 119.99692 * 90.00110 * 5 4 3 16 16 O 1.21944 * 119.99952 * 180.02562 * 15 5 4 17 17 N 1.33188 * 119.99867 * 0.02562 * 15 5 4 18 18 C 1.34394 * 120.00122 * 236.33113 * 17 15 5 19 19 C 1.41266 * 120.67549 * 187.62850 * 18 17 15 20 20 C 1.35259 * 119.29857 * 180.02562 * 19 18 17 21 21 N 1.35472 * 120.73084 * 359.97438 * 20 19 18 22 22 H 0.97003 * 119.27463 * 180.02562 * 21 20 19 23 23 C 1.35664 * 121.44872 * 359.97438 * 21 20 19 24 24 C 1.35396 * 120.64437 * 359.75577 * 23 21 20 25 25 F 1.35099 * 120.38746 * 180.28453 * 24 23 21 26 26 H 1.08993 * 109.47737 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47094 * 300.00607 * 1 2 3 28 28 H 1.08997 * 109.46839 * 59.99858 * 1 2 3 29 29 H 1.09006 * 109.47161 * 59.99675 * 3 2 1 30 30 H 1.09004 * 109.46776 * 300.00105 * 3 2 1 31 31 H 1.09003 * 109.46616 * 304.99721 * 4 3 2 32 32 H 1.09000 * 109.47519 * 185.00303 * 4 3 2 33 33 H 1.09009 * 109.46977 * 29.99664 * 6 5 4 34 34 H 1.08995 * 109.47790 * 149.99751 * 6 5 4 35 35 H 0.96993 * 120.00367 * 180.02562 * 10 9 7 36 36 H 1.08000 * 120.34942 * 359.97438 * 19 18 17 37 37 H 1.07998 * 119.63568 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.67062 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5009 -1.2981 -0.9448 8 1 6.2195 -0.5463 -0.6536 9 6 5.8602 -2.6292 -0.9516 10 7 4.9850 -3.5447 -1.3058 11 14 7.5905 -3.1322 -0.4591 12 1 8.3763 -1.9224 -0.1070 13 1 7.5269 -4.0397 0.7145 14 1 8.2435 -3.8343 -1.5930 15 6 4.2616 1.3335 -2.3218 16 8 4.6276 0.8172 -3.3641 17 7 4.1443 2.6577 -2.2398 18 6 3.3546 3.3172 -3.1044 19 6 3.3420 4.7295 -3.1359 20 6 2.5361 5.3647 -4.0171 21 7 1.7465 4.6618 -4.8643 22 1 1.1770 5.1390 -5.4879 23 6 1.7357 3.3052 -4.8605 24 6 2.5239 2.6112 -4.0060 25 9 2.5132 1.2602 -4.0105 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9786 2.1763 0.0890 33 1 3.3851 -1.3631 -0.6733 34 1 3.9120 -1.2117 -2.3667 35 1 5.2376 -4.4812 -1.3102 36 1 3.9686 5.2959 -2.4630 37 1 2.5224 6.4442 -4.0461 38 1 1.0952 2.7738 -5.5488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612754715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -77.439083 kcal Electronic energy + Delta-G solvation = -24906.055219 eV Core-core repulsion = 21084.773069 eV Total energy + Delta-G solvation = -3821.282150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.76395 -41.50020 -40.52345 -38.80945 -36.62317 -35.76940 -34.72781 -32.41547 -31.62439 -31.02549 -28.83705 -27.12799 -25.68461 -24.47467 -24.20624 -23.56385 -20.55782 -20.03326 -18.88319 -18.54333 -18.07599 -17.70046 -17.39369 -17.03149 -16.75866 -16.69908 -16.36936 -15.92487 -15.61702 -15.31813 -14.85161 -14.76725 -14.58120 -14.23437 -13.72948 -13.50406 -13.40319 -13.24001 -13.02222 -12.88704 -12.77096 -12.62986 -12.24673 -12.18563 -11.98404 -11.69741 -11.37340 -10.66105 -10.59972 -10.43158 -10.06656 -9.32076 -8.51380 -8.17423 -6.35536 -0.10455 0.21148 1.30914 1.35624 1.48598 1.91366 2.03392 2.32286 2.42781 2.80416 2.96000 3.07095 3.26840 3.58424 3.75928 4.05758 4.12504 4.15736 4.24950 4.37450 4.46889 4.51720 4.57171 4.72195 4.78214 4.88782 4.95070 5.09289 5.23624 5.29673 5.47902 5.61985 5.67241 5.99355 6.13419 6.26763 6.30536 6.72293 6.75698 7.11542 7.31309 7.97698 8.88004 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.005143 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.663595 B = 5442.928660 C = 6211.566239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.065 3.935 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.287 3.713 7 C -0.546 4.546 8 H 0.042 0.958 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.975 3.025 12 H -0.272 1.272 13 H -0.261 1.261 14 H -0.276 1.276 15 C 0.661 3.339 16 O -0.651 6.651 17 N -0.664 5.664 18 C 0.269 3.731 19 C -0.219 4.219 20 C 0.179 3.821 21 N -0.539 5.539 22 H 0.458 0.542 23 C 0.146 3.854 24 C -0.102 4.102 25 F -0.148 7.148 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.025 0.975 34 H -0.020 1.020 35 H 0.267 0.733 36 H 0.169 0.831 37 H 0.249 0.751 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 26.866 -5.832 31.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.003 4.003 5 N -0.329 5.329 6 C 0.165 3.835 7 C -0.585 4.585 8 H 0.060 0.940 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.798 3.202 12 H -0.196 1.196 13 H -0.185 1.185 14 H -0.202 1.202 15 C 0.364 3.636 16 O -0.535 6.535 17 N -0.406 5.406 18 C 0.112 3.888 19 C -0.245 4.245 20 C 0.047 3.953 21 N -0.144 5.144 22 H 0.301 0.699 23 C 0.011 3.989 24 C -0.131 4.131 25 F -0.128 7.128 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.043 0.957 34 H -0.002 1.002 35 H 0.076 0.924 36 H 0.187 0.813 37 H 0.265 0.735 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -15.358 26.183 -5.649 30.876 hybrid contribution 0.449 -1.634 -0.411 1.744 sum -14.908 24.549 -6.060 29.354 Atomic orbital electron populations 1.22865 0.79908 1.03220 1.00690 1.88053 1.21412 1.28740 1.95430 1.22916 0.93444 0.84503 1.00390 1.21530 0.93173 0.99234 0.86362 1.47552 1.66000 1.07250 1.12136 1.18474 0.95323 0.75422 0.94281 1.21795 0.98275 0.92754 1.45654 0.94011 1.25951 1.02473 0.95991 0.94932 1.70099 1.36615 1.01341 1.48825 0.85275 0.78354 0.78169 0.78375 1.19641 1.18550 1.20162 1.17537 0.78151 0.85449 0.82456 1.90831 1.54156 1.76847 1.31664 1.68599 1.32401 1.06585 1.32981 1.20006 0.87631 0.96030 0.85169 1.20740 1.07969 0.88666 1.07150 1.22830 0.86016 1.00633 0.85828 1.41134 1.36843 1.03383 1.33061 0.69871 1.21899 0.95779 0.85213 0.95979 1.18499 1.08539 0.78571 1.07513 1.91585 1.95850 1.29401 1.95920 0.89722 0.91620 0.94177 0.89181 0.94969 0.91399 0.87802 0.95688 1.00190 0.92372 0.81331 0.73497 0.77132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.42 -17.66 9.53 -148.98 -1.42 -19.08 16 3 C 0.06 2.42 6.28 71.98 0.45 2.87 16 4 C 0.12 5.47 5.79 86.38 0.50 5.97 16 5 N -0.60 -34.55 2.42 -845.33 -2.05 -36.59 16 6 C 0.29 19.41 4.98 85.63 0.43 19.83 16 7 C -0.55 -37.87 9.39 25.60 0.24 -37.63 16 8 H 0.04 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.00 0.31 5.46 84.66 0.46 0.77 16 10 N -0.93 -63.45 13.29 21.45 0.28 -63.17 16 11 Si 0.98 51.17 29.54 68.60 2.03 53.20 16 12 H -0.27 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 15 C 0.66 38.56 6.11 179.54 1.10 39.66 16 16 O -0.65 -44.32 14.37 -5.13 -0.07 -44.39 16 17 N -0.66 -30.83 9.16 -319.02 -2.92 -33.76 16 18 C 0.27 9.06 6.55 40.29 0.26 9.32 16 19 C -0.22 -3.70 10.00 22.33 0.22 -3.48 16 20 C 0.18 0.40 11.17 83.44 0.93 1.33 16 21 N -0.54 -0.61 5.24 -195.01 -1.02 -1.63 16 22 H 0.46 -4.53 8.90 -92.71 -0.82 -5.36 16 23 C 0.15 1.95 11.15 83.44 0.93 2.88 16 24 C -0.10 -3.29 6.96 22.41 0.16 -3.13 16 25 F -0.15 -7.07 13.37 44.97 0.60 -6.46 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 2.52 8.14 -2.38 -0.02 2.51 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.07 3.18 8.07 -2.39 -0.02 3.16 16 32 H 0.10 4.28 7.31 -2.39 -0.02 4.26 16 33 H 0.03 1.73 7.12 -2.38 -0.02 1.72 16 34 H -0.02 -1.55 7.42 -2.39 -0.02 -1.56 16 35 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16 36 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.25 -2.76 8.06 -2.91 -0.02 -2.78 16 38 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -121.84 332.88 2.62 -119.21 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: 0.26 Total: -7.84 kcal Atomic # 6 Polarization: 33.58 SS G_CDS: 6.93 Total: 40.51 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.71 Total: -135.15 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -1.49 Total: -63.47 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.60 Total: -6.46 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -121.84 2.62 -119.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612754715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.775 kcal (2) G-P(sol) polarization free energy of solvation -121.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -119.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds