Wall clock time and date at job start Tue Mar 31 2020 07:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81401 * 109.47578 * 2 1 4 4 C 1.81389 * 103.00235 * 174.71121 * 3 2 1 5 5 H 1.08997 * 109.47302 * 306.29480 * 4 3 2 6 6 C 1.50703 * 109.47393 * 186.29278 * 4 3 2 7 7 O 1.21303 * 119.99435 * 340.00125 * 6 4 3 8 8 N 1.34779 * 120.00291 * 160.00158 * 6 4 3 9 9 C 1.40594 * 119.99703 * 180.02562 * 8 6 4 10 10 C 1.40645 * 126.08723 * 359.97438 * 9 8 6 11 11 N 1.30900 * 108.39174 * 179.77784 * 10 9 8 12 12 N 1.40071 * 108.40507 * 0.37691 * 11 10 9 13 13 C 1.37327 * 126.06932 * 179.87722 * 12 11 10 14 14 H 1.08000 * 119.99731 * 179.69205 * 13 12 11 15 15 C 1.38984 * 120.00000 * 359.41809 * 13 12 11 16 16 N 1.31292 * 120.00043 * 0.27698 * 15 13 12 17 17 Si 1.86799 * 119.99870 * 180.27241 * 15 13 12 18 18 H 1.48503 * 109.47181 * 60.00246 * 17 15 13 19 19 H 1.48495 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47465 * 300.00345 * 17 15 13 21 21 C 1.35685 * 126.07691 * 179.97438 * 9 8 6 22 22 C 1.53007 * 109.47029 * 66.29560 * 4 3 2 23 23 C 1.52998 * 109.46984 * 64.41653 * 22 4 3 24 24 C 1.53002 * 109.46781 * 184.41651 * 22 4 3 25 25 H 1.08997 * 109.47040 * 300.00358 * 1 2 3 26 26 H 1.09005 * 109.46819 * 59.99556 * 1 2 3 27 27 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47044 * 239.99796 * 2 1 3 29 29 H 1.09004 * 109.47207 * 120.00070 * 2 1 3 30 30 H 0.96991 * 119.99719 * 359.97438 * 8 6 4 31 31 H 1.08005 * 125.80144 * 0.02562 * 10 9 8 32 32 H 0.96998 * 119.99687 * 180.02562 * 16 15 13 33 33 H 1.07999 * 126.24711 * 0.02562 * 21 9 8 34 34 H 1.09001 * 109.46668 * 304.41619 * 22 4 3 35 35 H 1.09001 * 109.47446 * 60.00443 * 23 22 4 36 36 H 1.08998 * 109.46820 * 180.02562 * 23 22 4 37 37 H 1.08994 * 109.46951 * 300.00019 * 23 22 4 38 38 H 1.09002 * 109.47368 * 53.61715 * 24 22 4 39 39 H 1.09008 * 109.46856 * 173.61708 * 24 22 4 40 40 H 1.08998 * 109.47233 * 293.61179 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9300 1.5082 0.1629 5 1 4.1485 0.8890 1.0329 6 6 4.5742 2.8599 0.3338 7 8 3.9818 3.8616 -0.0083 8 7 5.8085 2.9557 0.8667 9 6 6.4091 4.2167 1.0266 10 6 5.8418 5.4550 0.6761 11 7 6.6951 6.4006 0.9780 12 7 7.8400 5.8055 1.5230 13 6 8.9626 6.4638 1.9615 14 1 9.7909 5.9049 2.3713 15 6 9.0351 7.8490 1.8728 16 7 8.0281 8.5285 1.3748 17 14 10.5652 8.7438 2.4623 18 1 11.7426 8.2728 1.6897 19 1 10.3926 10.2049 2.2608 20 1 10.7765 8.4652 3.9056 21 6 7.6394 4.4556 1.5466 22 6 4.4836 0.8348 -1.0945 23 6 4.2748 1.7542 -2.2994 24 6 5.9785 0.5646 -0.9121 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 6.2819 2.1547 1.1406 31 1 4.8661 5.6011 0.2365 32 1 8.0789 9.4951 1.3125 33 1 8.3335 3.7131 1.9116 34 1 3.9618 -0.1075 -1.2616 35 1 4.7966 2.6965 -2.1323 36 1 4.6688 1.2743 -3.1952 37 1 3.2099 1.9467 -2.4293 38 1 6.1368 0.0045 0.0095 39 1 6.3488 -0.0151 -1.7577 40 1 6.5151 1.5119 -0.8583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727375131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:48 Heat of formation + Delta-G solvation = 37.108264 kcal Electronic energy + Delta-G solvation = -21837.037286 eV Core-core repulsion = 18586.935458 eV Total energy + Delta-G solvation = -3250.101828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08460 -38.85613 -35.81147 -34.21698 -33.09056 -32.91733 -30.24916 -28.75793 -27.44375 -27.04784 -24.83348 -23.73677 -21.62832 -20.91466 -19.71111 -19.36606 -17.50657 -16.82306 -15.99273 -15.74464 -15.47155 -15.31171 -15.03405 -14.50006 -14.18125 -13.85832 -13.64804 -13.36056 -12.96019 -12.85554 -12.78512 -12.47822 -12.13021 -11.69543 -11.67081 -11.53505 -11.41338 -11.27382 -11.17536 -11.10769 -10.95861 -10.88461 -10.55108 -10.10502 -9.77380 -9.16291 -9.14213 -8.78592 -8.04311 -7.58362 -6.68971 -6.54166 -4.21495 1.46274 2.50460 2.83885 3.04558 3.05480 3.09617 3.58494 3.68326 3.88330 4.39879 4.57382 4.67266 4.71803 4.77053 4.81231 4.96072 5.03578 5.16474 5.21983 5.25993 5.41241 5.50849 5.58912 5.63277 5.78082 5.87147 5.95104 5.98557 6.20170 6.24817 6.44762 6.46931 6.90099 6.96717 7.12516 7.25287 7.86931 8.16492 8.28950 8.63798 8.84722 9.39234 9.68776 10.41751 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.003224 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.836576 B = 8681.617382 C = 9022.109864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 S -0.179 6.179 4 C -0.085 4.085 5 H 0.101 0.899 6 C 0.523 3.477 7 O -0.514 6.514 8 N -0.619 5.619 9 C -0.059 4.059 10 C -0.032 4.032 11 N -0.260 5.260 12 N -0.142 5.142 13 C -0.324 4.324 14 H 0.115 0.885 15 C 0.046 3.954 16 N -0.770 5.770 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.084 4.084 22 C -0.080 4.080 23 C -0.154 4.154 24 C -0.160 4.160 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.396 0.604 31 H 0.176 0.824 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -17.923 -2.558 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.261 4.261 3 S 0.050 5.950 4 C -0.217 4.217 5 H 0.119 0.881 6 C 0.307 3.693 7 O -0.390 6.390 8 N -0.263 5.263 9 C -0.164 4.164 10 C -0.207 4.207 11 N -0.091 5.091 12 N 0.090 4.910 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.396 5.396 17 Si 0.758 3.242 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.235 4.235 22 C -0.101 4.101 23 C -0.211 4.211 24 C -0.219 4.219 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.193 0.807 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.293 -14.742 -2.920 16.705 hybrid contribution 1.643 -2.260 0.636 2.865 sum -5.650 -17.002 -2.285 18.062 Atomic orbital electron populations 1.21465 0.92263 1.02248 1.03314 1.23459 1.00315 0.97710 1.04602 1.87469 1.01701 1.08846 1.97014 1.23543 0.96382 0.99428 1.02363 0.88116 1.19246 0.81630 0.89075 0.79360 1.90638 1.62387 1.36750 1.49178 1.42513 1.15821 1.07420 1.60522 1.17244 0.95885 0.84710 1.18610 1.24110 1.01247 0.88807 1.06570 1.78261 0.92800 1.18921 1.19115 1.44541 1.10802 1.02031 1.33593 1.19812 0.93034 0.90567 1.42190 0.86711 1.25634 0.98758 0.96779 0.95922 1.70207 1.28648 1.08104 1.32644 0.85904 0.80270 0.78468 0.79546 1.19182 1.20133 1.19177 1.21234 0.98618 0.87548 1.16125 1.21240 0.96687 0.98615 0.93543 1.21961 1.03651 0.99547 0.95941 1.22089 0.95012 1.02885 1.01890 0.91638 0.91671 0.91365 0.90224 0.90442 0.77062 0.80733 0.91406 0.83795 0.90594 0.91733 0.92739 0.90839 0.92506 0.91865 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.92 37.16 0.37 -0.68 16 2 C -0.11 -1.00 6.29 37.16 0.23 -0.77 16 3 S -0.18 -2.40 19.16 -107.50 -2.06 -4.46 16 4 C -0.08 -1.10 2.41 -27.88 -0.07 -1.16 16 5 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 6 C 0.52 9.23 5.23 -10.98 -0.06 9.17 16 7 O -0.51 -11.19 12.89 5.54 0.07 -11.12 16 8 N -0.62 -10.96 4.36 -10.00 -0.04 -11.00 16 9 C -0.06 -1.36 6.90 -83.84 -0.58 -1.93 16 10 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 11 N -0.26 -7.63 10.40 30.80 0.32 -7.31 16 12 N -0.14 -3.91 3.74 -11.41 -0.04 -3.96 16 13 C -0.32 -8.60 10.25 -14.81 -0.15 -8.75 16 14 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 15 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 16 N -0.77 -21.67 11.81 55.49 0.66 -21.02 16 17 Si 0.93 19.00 29.55 -169.99 -5.02 13.98 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.08 -1.98 11.49 -16.39 -0.19 -2.17 16 22 C -0.08 -0.87 2.65 -90.62 -0.24 -1.11 16 23 C -0.15 -1.96 8.67 37.16 0.32 -1.64 16 24 C -0.16 -1.59 8.13 37.16 0.30 -1.29 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.63 7.31 -51.92 -0.38 0.25 16 29 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.40 5.48 7.70 -40.82 -0.31 5.16 16 31 H 0.18 4.66 5.92 -52.48 -0.31 4.35 16 32 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 34 H 0.08 0.69 6.96 -51.93 -0.36 0.32 16 35 H 0.06 1.03 6.90 -51.93 -0.36 0.67 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.07 0.87 6.45 -51.93 -0.33 0.53 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -33.06 339.20 -7.13 -40.19 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.78 Total: 9.84 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.34 Total: -10.26 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.89 Total: -43.28 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.06 Total: -4.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.06 -7.13 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727375131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.296 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds