Wall clock time and date at job start Tue Mar 31 2020 07:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47267 * 2 1 4 4 C 1.37836 * 119.99982 * 180.02562 * 3 2 1 5 5 N 1.30235 * 124.74954 * 0.02805 * 4 3 2 6 6 C 1.30883 * 117.26525 * 179.97438 * 5 4 3 7 7 C 1.50692 * 122.98443 * 180.02562 * 6 5 4 8 8 C 1.36705 * 114.02823 * 359.97438 * 6 5 4 9 9 C 1.46225 * 126.11198 * 179.97438 * 8 6 5 10 10 O 1.21751 * 119.99670 * 0.02562 * 9 8 6 11 11 N 1.34769 * 120.00454 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00237 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46953 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00355 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46889 * 89.99924 * 19 17 15 21 21 H 1.48498 * 109.47131 * 210.00227 * 19 17 15 22 22 H 1.48500 * 109.47362 * 330.00383 * 19 17 15 23 23 S 1.70925 * 124.74794 * 180.31339 * 4 3 2 24 24 H 1.08998 * 109.46947 * 299.99703 * 1 2 3 25 25 H 1.08995 * 109.47159 * 59.99612 * 1 2 3 26 26 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46945 * 239.99823 * 2 1 3 28 28 H 1.08995 * 109.47159 * 120.00388 * 2 1 3 29 29 H 0.96997 * 119.99602 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.47571 * 269.97550 * 7 6 5 31 31 H 1.08998 * 109.47477 * 29.98046 * 7 6 5 32 32 H 1.09000 * 109.46924 * 149.97742 * 7 6 5 33 33 H 0.97010 * 119.99854 * 0.02562 * 11 9 8 34 34 H 1.08993 * 109.47452 * 60.00368 * 12 11 9 35 35 H 1.09000 * 109.47175 * 300.00158 * 12 11 9 36 36 H 1.09000 * 109.47050 * 299.99945 * 13 12 11 37 37 H 1.09001 * 109.46801 * 60.00058 * 13 12 11 38 38 H 1.09000 * 109.47486 * 299.99829 * 14 13 12 39 39 H 1.09001 * 109.47362 * 60.00551 * 14 13 12 40 40 H 0.96991 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3735 1.6330 -0.0005 5 7 4.2989 0.7166 -0.0016 6 6 5.5435 1.1213 -0.0025 7 6 6.7146 0.1729 -0.0043 8 6 5.6868 2.4808 -0.0027 9 6 6.9520 3.2140 -0.0032 10 8 8.0073 2.6070 -0.0038 11 7 6.9498 4.5617 -0.0039 12 6 8.2174 5.2963 -0.0049 13 6 7.9353 6.8001 -0.0049 14 6 9.2591 7.5672 -0.0053 15 6 8.9814 9.0484 -0.0060 16 1 7.9626 9.4068 -0.0057 17 6 10.0279 9.9461 -0.0070 18 7 9.7855 11.2387 -0.0071 19 14 11.7901 9.3263 -0.0067 20 1 12.2567 9.1608 -1.4068 21 1 12.6595 10.3064 0.6923 22 1 11.8549 8.0188 0.6943 23 16 4.0748 3.1918 0.0071 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3880 2.1184 0.0004 30 1 6.9983 -0.0563 1.0229 31 1 6.4362 -0.7472 -0.5182 32 1 7.5564 0.6361 -0.5190 33 1 6.1089 5.0454 -0.0038 34 1 8.7889 5.0335 -0.8950 35 1 8.7898 5.0344 0.8850 36 1 7.3627 7.0624 -0.8946 37 1 7.3639 7.0626 0.8854 38 1 9.8314 7.3049 0.8845 39 1 9.8309 7.3048 -0.8955 40 1 10.5217 11.8702 -0.0074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759242717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:33 Heat of formation + Delta-G solvation = -33.101994 kcal Electronic energy + Delta-G solvation = -20584.165647 eV Core-core repulsion = 17331.019273 eV Total energy + Delta-G solvation = -3253.146373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31646 -40.23573 -37.58393 -36.92931 -35.15761 -33.38360 -32.83920 -30.76855 -29.98765 -28.27360 -25.10366 -24.88727 -23.68967 -22.39261 -22.16396 -20.28151 -19.61053 -18.94361 -17.85518 -17.77481 -16.93100 -16.57842 -16.48275 -16.17818 -15.79371 -15.66621 -15.01352 -14.94092 -14.77184 -14.51248 -13.83273 -13.76144 -13.60152 -13.52666 -13.17264 -12.74337 -12.73145 -12.70242 -12.50364 -12.31778 -11.90597 -11.77224 -11.59893 -11.32651 -11.16025 -11.11305 -10.75309 -10.68598 -10.37965 -10.12167 -8.78987 -8.28506 -6.32337 -0.55979 -0.08436 0.55477 1.38033 1.39606 1.48745 1.51588 2.01155 2.18668 2.20398 2.37364 3.07174 3.36252 3.87714 4.05052 4.07459 4.20156 4.20360 4.21994 4.49811 4.51307 4.59750 4.73152 4.83982 4.88963 4.91284 4.95718 5.03652 5.04479 5.22722 5.25449 5.38761 5.48566 5.55946 5.65679 5.68464 6.03693 6.28249 6.45368 6.75464 6.83355 7.13989 7.32309 8.87828 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.002572 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.373546 B =10884.375884 C =11777.087939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 N -0.669 5.669 4 C 0.328 3.672 5 N -0.571 5.571 6 C 0.202 3.798 7 C -0.086 4.086 8 C -0.380 4.380 9 C 0.599 3.401 10 O -0.568 6.568 11 N -0.718 5.718 12 C 0.129 3.871 13 C -0.101 4.101 14 C -0.012 4.012 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.003 3.997 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.247 1.247 23 S 0.168 5.832 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.429 0.571 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.265 -25.204 0.037 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.308 5.308 4 C -0.042 4.042 5 N -0.298 5.298 6 C 0.061 3.939 7 C -0.145 4.145 8 C -0.506 4.506 9 C 0.387 3.613 10 O -0.450 6.450 11 N -0.369 5.369 12 C 0.005 3.995 13 C -0.139 4.139 14 C -0.050 4.050 15 C -0.568 4.568 16 H 0.055 0.945 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.171 1.171 23 S 0.419 5.581 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.241 0.759 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.171 -25.119 0.049 32.215 hybrid contribution 0.874 0.404 -0.009 0.963 sum -19.297 -24.715 0.039 31.356 Atomic orbital electron populations 1.21991 0.91786 1.04508 1.03358 1.21532 0.95914 0.80543 1.02155 1.44248 0.99187 1.10637 1.76724 1.23988 0.91473 0.93616 0.95091 1.66127 0.99339 1.34866 1.29453 1.20756 0.91994 0.91029 0.90100 1.20620 0.92869 0.97086 1.03911 1.24849 0.96531 0.97291 1.31928 1.16792 0.87120 0.81782 0.75584 1.90750 1.32801 1.68540 1.52906 1.45877 1.10317 1.05527 1.75203 1.21363 0.85084 0.91169 1.01850 1.21499 0.98857 0.91472 1.02116 1.19465 0.94985 0.93545 0.96958 1.21457 0.93648 0.91481 1.50228 0.94453 1.25995 1.04255 0.94841 0.94244 1.70056 1.33676 1.02642 1.52707 0.85690 0.78832 0.79144 0.79202 1.19227 1.21053 1.17060 1.83631 0.96379 1.05361 1.72704 0.91135 0.91138 0.89315 0.91882 0.91893 0.73078 0.89590 0.89494 0.89648 0.75921 0.91854 0.91938 0.91782 0.91808 0.95927 0.96040 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 10.03 71.98 0.72 0.24 16 2 C 0.12 1.11 6.64 86.38 0.57 1.68 16 3 N -0.67 -7.34 5.68 -351.34 -2.00 -9.34 16 4 C 0.33 6.01 8.05 179.43 1.44 7.45 16 5 N -0.57 -13.19 10.05 -188.53 -1.89 -15.08 16 6 C 0.20 5.17 6.83 42.34 0.29 5.46 16 7 C -0.09 -2.01 9.71 71.23 0.69 -1.31 16 8 C -0.38 -10.02 6.49 23.99 0.16 -9.86 16 9 C 0.60 18.73 7.76 86.32 0.67 19.40 16 10 O -0.57 -20.88 14.30 -4.51 -0.06 -20.95 16 11 N -0.72 -20.98 5.55 -467.51 -2.59 -23.57 16 12 C 0.13 4.26 5.67 86.38 0.49 4.75 16 13 C -0.10 -3.76 5.27 30.60 0.16 -3.60 16 14 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 15 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 16 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 17 C 0.00 0.20 5.47 84.65 0.46 0.66 16 18 N -0.95 -59.57 13.96 21.45 0.30 -59.28 16 19 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 23 S 0.17 3.11 22.33 -56.49 -1.26 1.85 16 24 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.43 2.38 8.59 -92.71 -0.80 1.58 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 2.31 6.04 -2.39 -0.01 2.29 16 33 H 0.41 10.03 7.64 -92.70 -0.71 9.32 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 39 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -73.06 348.61 -0.10 -73.16 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.50 Total: 12.31 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.03 Total: -5.58 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -6.19 Total: -107.27 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.26 Total: 1.85 kcal Total: -73.06 -0.10 -73.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759242717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.053 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds