Wall clock time and date at job start Tue Mar 31 2020 08:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 N 1.30130 * 121.05970 * 269.72075 * 5 4 3 7 7 S 1.69949 * 105.76369 * 179.88283 * 6 5 4 8 8 C 1.72310 * 94.57288 * 0.31865 * 7 6 5 9 9 N 1.38321 * 127.50270 * 179.79109 * 8 7 6 10 10 C 1.46838 * 110.99838 * 236.07154 * 9 8 7 11 11 C 1.53031 * 109.52271 * 185.84062 * 10 9 8 12 12 C 1.53121 * 109.28088 * 300.82256 * 11 10 9 13 13 C 1.53117 * 109.16031 * 57.65219 * 12 11 10 14 14 H 1.09000 * 109.50408 * 62.32695 * 13 12 11 15 15 C 1.50695 * 109.50574 * 182.40776 * 13 12 11 16 16 H 1.08003 * 119.99825 * 359.97438 * 15 13 12 17 17 C 1.37873 * 120.00364 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99869 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00244 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47076 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47398 * 120.00149 * 19 17 15 22 22 H 1.48501 * 109.47264 * 239.99745 * 19 17 15 23 23 C 1.46849 * 110.99707 * 0.28361 * 9 8 7 24 24 N 1.31283 * 121.06260 * 90.00113 * 5 4 3 25 25 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 27 27 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 28 28 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 29 29 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 31 31 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 32 32 H 1.09000 * 109.46645 * 305.86016 * 10 9 8 33 33 H 1.09007 * 109.46313 * 65.82575 * 10 9 8 34 34 H 1.09002 * 109.50431 * 60.76328 * 11 10 9 35 35 H 1.09005 * 109.50541 * 180.87988 * 11 10 9 36 36 H 1.09002 * 109.52458 * 177.56049 * 12 11 10 37 37 H 1.09003 * 109.52029 * 297.74623 * 12 11 10 38 38 H 0.96996 * 119.99686 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.46139 * 294.17551 * 23 9 8 40 40 H 1.08995 * 109.46219 * 54.14659 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5614 0.0013 6 7 4.4270 3.1728 -1.1132 7 16 5.0885 4.6725 -0.6642 8 6 4.9574 4.3791 1.0287 9 7 5.3322 5.2205 2.0607 10 6 6.2813 4.5562 2.9629 11 6 6.5604 5.4592 4.1665 12 6 7.1388 6.7898 3.6768 13 6 6.1524 7.4380 2.7015 14 1 5.2175 7.6534 3.2188 15 6 6.7398 8.7195 2.1692 16 1 7.7186 9.0407 2.4938 17 6 6.0279 9.4821 1.2678 18 7 4.8363 9.0908 0.8720 19 14 6.7558 11.0711 0.6085 20 1 8.0982 11.2860 1.2060 21 1 6.8792 10.9837 -0.8688 22 1 5.8684 12.2073 0.9646 23 6 5.8851 6.4775 1.5403 24 7 4.4235 3.1799 1.1261 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8568 0.6438 0.8908 31 1 3.8575 0.6436 -0.8892 32 1 5.8561 3.6134 3.3071 33 1 7.2127 4.3616 2.4311 34 1 5.6317 5.6430 4.7068 35 1 7.2769 4.9725 4.8283 36 1 7.2987 7.4525 4.5274 37 1 8.0872 6.6103 3.1704 38 1 4.3353 9.6275 0.2381 39 1 6.8182 6.2739 1.0152 40 1 5.1720 6.9302 0.8514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853762147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:19 Heat of formation + Delta-G solvation = 1.106979 kcal Electronic energy + Delta-G solvation = -21785.681993 eV Core-core repulsion = 18534.019032 eV Total energy + Delta-G solvation = -3251.662961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17900 -38.66107 -37.87965 -34.28681 -32.83127 -31.85982 -30.60959 -29.89550 -26.92479 -25.28992 -25.21229 -23.66909 -22.33156 -21.53598 -19.35901 -19.09800 -18.34920 -16.90504 -16.63296 -16.11890 -15.85750 -15.55433 -14.79404 -14.60605 -14.31663 -14.03437 -13.65720 -13.43363 -13.32588 -12.94435 -12.58089 -12.23136 -12.04344 -11.76011 -11.43581 -11.32096 -11.23535 -11.10557 -11.00248 -10.66128 -10.44378 -10.41851 -10.36737 -9.83888 -9.80992 -9.46754 -9.23334 -9.18308 -8.99008 -8.54593 -7.95506 -6.19418 -4.27325 0.83624 1.46543 2.05727 2.76210 3.20140 3.30036 3.32585 3.38189 3.80867 4.29936 4.62020 4.93676 4.97040 5.13765 5.17745 5.23477 5.28022 5.31376 5.34103 5.45706 5.54435 5.63509 5.69934 5.82594 5.96363 6.02895 6.13955 6.20835 6.30179 6.35155 6.63350 6.67916 6.77123 6.95060 6.99593 7.28737 7.40372 7.64935 7.83322 7.97420 8.20097 8.78229 9.40195 10.86971 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.003814 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.251744 B = 7339.121594 C = 8031.395022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.071 3.929 4 C -0.025 4.025 5 C 0.284 3.716 6 N -0.506 5.506 7 S 0.200 5.800 8 C 0.291 3.709 9 N -0.425 5.425 10 C 0.069 3.931 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.057 3.943 14 H 0.041 0.959 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.045 3.955 24 N -0.555 5.555 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.039 0.961 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 -12.882 0.352 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.008 4.008 4 C -0.068 4.068 5 C -0.007 4.007 6 N -0.339 5.339 7 S 0.338 5.662 8 C -0.087 4.087 9 N -0.144 5.144 10 C -0.058 4.058 11 C -0.156 4.156 12 C -0.154 4.154 13 C 0.038 3.962 14 H 0.059 0.941 15 C -0.556 4.556 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.080 4.080 24 N -0.286 5.286 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.888 -12.574 -0.672 12.919 hybrid contribution 0.308 0.672 -0.003 0.739 sum -2.580 -11.902 -0.676 12.197 Atomic orbital electron populations 1.22737 0.80763 1.02661 1.00205 1.87810 1.19903 1.27787 1.95535 1.22379 0.92575 0.84649 1.01154 1.19899 0.93096 0.88500 1.05270 1.22869 0.96667 0.98226 0.82940 1.77355 1.26595 1.03711 1.26223 1.85417 1.58250 1.20171 1.02330 1.27304 0.94141 0.91010 0.96197 1.58185 1.39696 1.04427 1.12119 1.22245 0.92529 0.97546 0.93518 1.21697 1.01385 0.96721 0.95816 1.21760 0.99317 0.94535 0.99837 1.18700 0.95401 0.91843 0.90300 0.94079 1.21153 1.03501 1.05076 1.25888 0.91933 1.25037 0.94701 0.98009 0.96194 1.69817 1.11473 1.38619 1.32643 0.86490 0.79315 0.83219 0.78791 1.19668 1.20823 1.20864 1.23211 0.98952 0.83849 1.02032 1.67381 1.23128 1.08690 1.29382 0.89567 0.93918 0.94028 0.92467 0.92788 0.88249 0.88589 0.89859 0.93572 0.91156 0.91735 0.92300 0.93092 0.92532 0.94314 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.72 10.70 -35.23 -0.38 -5.10 16 3 C 0.07 0.89 5.92 37.16 0.22 1.11 16 4 C -0.03 -0.33 6.12 -27.88 -0.17 -0.50 16 5 C 0.28 4.76 6.82 -159.04 -1.08 3.67 16 6 N -0.51 -9.10 12.15 29.54 0.36 -8.74 16 7 S 0.20 3.74 22.17 -107.50 -2.38 1.36 16 8 C 0.29 5.58 7.02 -86.35 -0.61 4.98 16 9 N -0.43 -8.31 4.71 -174.57 -0.82 -9.13 16 10 C 0.07 1.14 5.39 -3.84 -0.02 1.12 16 11 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 12 C -0.12 -2.16 5.23 -26.61 -0.14 -2.30 16 13 C 0.06 1.28 2.26 -91.69 -0.21 1.08 16 14 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.52 -12.98 8.56 -34.44 -0.29 -13.28 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.63 11.34 55.43 0.63 -23.00 16 19 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.04 0.97 3.63 -3.83 -0.01 0.96 16 24 N -0.56 -10.10 10.38 -14.57 -0.15 -10.25 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.30 7.93 -51.93 -0.41 0.88 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.12 2.98 5.56 -51.93 -0.29 2.69 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -27.37 339.15 -10.28 -37.64 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.16 Total: -0.62 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.46 Total: -2.26 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.01 Total: -51.12 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.38 Total: 1.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.37 -10.28 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853762147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.748 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds