Wall clock time and date at job start Tue Mar 31 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 C 1.52994 * 109.46879 * 119.99831 * 2 1 3 5 5 C 1.50698 * 109.47479 * 295.00012 * 4 2 1 6 6 H 1.08001 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00052 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00208 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47464 * 59.99211 * 9 7 5 11 11 H 1.48494 * 109.47341 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46851 * 299.99828 * 9 7 5 13 13 C 1.52998 * 109.47004 * 239.99905 * 2 1 3 14 14 N 1.46906 * 109.47020 * 65.00051 * 13 2 1 15 15 C 1.46902 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.53008 * 109.46622 * 179.97438 * 15 14 13 17 17 H 1.09003 * 109.47223 * 304.99930 * 16 15 14 18 18 O 1.42900 * 109.47139 * 65.00304 * 16 15 14 19 19 C 1.50706 * 109.46545 * 185.00054 * 16 15 14 20 20 C 1.38238 * 119.98546 * 279.72116 * 19 16 15 21 21 C 1.38216 * 120.01093 * 179.73149 * 20 19 16 22 22 C 1.38357 * 119.98510 * 0.55046 * 21 20 19 23 23 Cl 1.73598 * 120.00933 * 179.74997 * 22 21 20 24 24 C 1.38347 * 119.97452 * 359.72459 * 22 21 20 25 25 C 1.38220 * 119.98629 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47560 * 59.99994 * 1 2 3 27 27 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47220 * 300.00479 * 1 2 3 29 29 H 1.09003 * 109.47286 * 55.00023 * 4 2 1 30 30 H 1.09005 * 109.46665 * 174.99692 * 4 2 1 31 31 H 0.96996 * 119.99734 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47142 * 305.00261 * 13 2 1 33 33 H 1.09000 * 109.46991 * 185.00006 * 13 2 1 34 34 H 1.00896 * 111.00309 * 56.04370 * 14 13 2 35 35 H 1.08990 * 109.47358 * 299.99539 * 15 14 13 36 36 H 1.09004 * 109.47457 * 60.00221 * 15 14 13 37 37 H 0.96697 * 114.00040 * 59.99197 * 18 16 15 38 38 H 1.08004 * 119.99606 * 0.02562 * 20 19 16 39 39 H 1.08005 * 120.00641 * 180.27853 * 21 20 19 40 40 H 1.07998 * 120.00742 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.98983 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6763 -1.5188 3.8511 9 14 1.4984 0.5627 5.2496 10 1 0.0184 0.6683 5.3092 11 1 1.9934 -0.1373 6.4621 12 1 2.0895 1.9235 5.1870 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 6 1.7023 0.1909 -4.8892 17 1 0.6231 0.3431 -4.8684 18 8 2.3627 1.4580 -4.8669 19 6 2.0808 -0.5508 -6.1453 20 6 3.3811 -0.5007 -6.6120 21 6 3.7301 -1.1853 -7.7608 22 6 2.7752 -1.9115 -8.4501 23 17 3.2114 -2.7663 -9.8967 24 6 1.4728 -1.9566 -7.9857 25 6 1.1261 -1.2758 -6.8338 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2055 31 1 2.9235 -1.8416 4.7317 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2056 34 1 1.9881 0.9873 -2.3967 35 1 3.2126 -0.7037 -3.6401 36 1 1.6921 -1.6247 -3.7301 37 1 3.3277 1.3989 -4.8835 38 1 4.1255 0.0695 -6.0761 39 1 4.7470 -1.1498 -8.1229 40 1 0.7269 -2.5230 -8.5235 41 1 0.1095 -1.3113 -6.4710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876911396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:49 Heat of formation + Delta-G solvation = -55.791187 kcal Electronic energy + Delta-G solvation = -20721.586682 eV Core-core repulsion = 17433.119974 eV Total energy + Delta-G solvation = -3288.466708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16342 -37.92652 -36.77930 -36.23435 -33.78385 -32.17898 -31.55609 -31.37595 -28.04138 -26.67893 -25.02030 -23.44402 -23.13428 -22.05334 -21.37524 -19.11841 -18.08490 -16.67454 -16.47903 -16.35824 -15.67413 -15.27851 -14.72473 -14.60154 -14.24939 -14.11457 -13.89137 -13.74881 -13.53156 -12.73448 -12.64023 -12.34126 -12.11979 -11.89453 -11.87695 -11.54605 -11.36341 -11.27188 -11.15464 -10.84158 -10.75495 -10.51593 -10.28471 -10.17637 -9.70089 -9.47152 -9.16548 -9.02677 -8.90597 -8.32299 -8.18127 -5.97199 -3.98353 0.67725 0.86356 1.73170 3.15399 3.34952 3.39210 3.41871 4.02697 4.17152 4.32195 4.44824 4.48085 4.70198 4.83115 4.88609 4.98201 5.08925 5.23460 5.38466 5.46879 5.54634 5.65618 5.72661 5.76582 5.79713 5.88476 6.13791 6.14861 6.34250 6.39967 6.53791 6.68727 6.99777 7.17750 7.19366 7.29632 7.33655 7.63088 7.69740 7.85242 8.02865 8.46908 9.07810 9.64950 11.14295 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.002130 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.482907 B =13140.491457 C =13345.193418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.033 3.967 16 C 0.148 3.852 17 H 0.119 0.881 18 O -0.550 6.550 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.036 4.036 23 Cl -0.073 7.073 24 C -0.108 4.108 25 C -0.094 4.094 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.344 0.656 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.371 0.629 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -0.150 -26.539 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.097 4.097 16 C 0.088 3.912 17 H 0.137 0.863 18 O -0.355 6.355 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.063 4.063 23 Cl -0.044 7.044 24 C -0.127 4.127 25 C -0.113 4.113 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.162 0.838 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.218 0.782 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.381 -0.415 -26.544 26.550 hybrid contribution 1.436 0.149 0.770 1.636 sum 1.054 -0.265 -25.774 25.797 Atomic orbital electron populations 1.21591 0.95685 1.00542 1.00216 1.21199 0.96053 0.98943 0.93937 0.92775 1.19118 0.95866 0.95573 0.90452 1.21200 1.34640 1.08287 0.90980 0.92588 1.25029 0.95347 0.95121 0.99119 1.69956 1.39069 1.21227 1.23476 0.86678 0.78915 0.80082 0.82438 1.20259 1.21399 1.20306 1.22168 0.97127 0.97700 0.89447 1.60480 1.63864 1.06166 1.00986 1.22596 0.97703 0.98794 0.90611 1.20977 0.98719 0.82451 0.89010 0.86290 1.86681 1.23436 1.28721 1.96702 1.20736 0.93994 0.98272 0.97734 1.20863 0.95937 0.99025 0.95977 1.21026 0.99303 0.96951 0.95326 1.20968 0.95130 0.99332 0.90875 1.98377 1.93261 1.76118 1.36663 1.21080 0.94655 1.00040 0.96905 1.21029 0.99877 0.96206 0.94148 0.93887 0.94198 0.92750 0.96580 0.96982 0.93053 0.91596 0.95827 0.83750 0.95180 0.90160 0.78179 0.85227 0.84819 0.84740 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.08 5.07 -3.82 -0.02 1.06 16 14 N -0.68 -9.45 5.96 -113.77 -0.68 -10.12 16 15 C 0.03 0.36 5.34 -3.82 -0.02 0.34 16 16 C 0.15 1.39 3.45 -27.88 -0.10 1.29 16 17 H 0.12 1.18 8.00 -51.93 -0.42 0.77 16 18 O -0.55 -5.39 12.71 -35.23 -0.45 -5.83 16 19 C -0.11 -0.91 4.97 -104.62 -0.52 -1.43 16 20 C -0.10 -0.77 9.32 -39.59 -0.37 -1.14 16 21 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 22 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 23 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 24 C -0.11 -0.86 9.83 -39.55 -0.39 -1.24 16 25 C -0.09 -0.76 9.67 -39.59 -0.38 -1.14 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.72 8.29 -39.29 -0.33 4.39 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.37 2.45 7.50 45.56 0.34 2.79 16 38 H 0.13 0.74 6.78 -52.48 -0.36 0.38 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.88 8.04 -52.49 -0.42 0.46 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -30.88 355.17 -10.07 -40.95 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.67 Total: 1.92 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.84 Total: -20.60 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.06 Total: -36.41 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.45 Total: -5.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.88 -10.07 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876911396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.841 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds