Wall clock time and date at job start Tue Mar 31 2020 07:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47078 * 2 1 4 4 C 1.37096 * 120.00136 * 83.43888 * 3 2 1 5 5 H 1.07999 * 120.00560 * 168.72995 * 4 3 2 6 6 C 1.38951 * 119.99522 * 348.72926 * 4 3 2 7 7 N 1.31410 * 120.00431 * 5.89701 * 6 4 3 8 8 Si 1.86804 * 119.99811 * 185.89749 * 6 4 3 9 9 H 1.48507 * 109.46826 * 60.00188 * 8 6 4 10 10 H 1.48503 * 109.47187 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47292 * 300.00020 * 8 6 4 12 12 C 1.34774 * 120.00153 * 263.43633 * 3 2 1 13 13 O 1.21298 * 120.00186 * 354.66134 * 12 3 2 14 14 C 1.50699 * 120.00037 * 174.66552 * 12 3 2 15 15 C 1.52995 * 109.47525 * 67.45956 * 14 12 3 16 16 C 1.53005 * 109.46915 * 307.45643 * 14 12 3 17 17 C 1.50710 * 109.47084 * 187.46037 * 14 12 3 18 18 C 1.38229 * 119.98499 * 119.99731 * 17 14 12 19 19 C 1.38190 * 120.04877 * 180.25381 * 18 17 14 20 20 C 1.38498 * 120.02408 * 359.45249 * 19 18 17 21 21 F 1.35100 * 120.01267 * 180.27731 * 20 19 18 22 22 C 1.38395 * 119.97162 * 0.54611 * 20 19 18 23 23 C 1.38444 * 119.95537 * 359.72947 * 22 20 19 24 24 F 1.35094 * 120.01650 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.47550 * 69.31128 * 1 2 3 26 26 H 1.09003 * 109.47516 * 189.31970 * 1 2 3 27 27 H 1.09005 * 109.46866 * 309.31232 * 1 2 3 28 28 H 1.09004 * 109.46455 * 240.00411 * 2 1 3 29 29 H 1.09001 * 109.47508 * 120.00288 * 2 1 3 30 30 H 0.96998 * 120.00242 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47553 * 190.60379 * 15 14 12 32 32 H 1.09002 * 109.47091 * 310.60565 * 15 14 12 33 33 H 1.09003 * 109.46833 * 70.60510 * 15 14 12 34 34 H 1.08994 * 109.47052 * 305.87266 * 16 14 12 35 35 H 1.08998 * 109.46553 * 65.87125 * 16 14 12 36 36 H 1.08996 * 109.46902 * 185.86757 * 16 14 12 37 37 H 1.07996 * 119.97692 * 359.97438 * 18 17 14 38 38 H 1.07991 * 119.98765 * 179.70016 * 19 18 17 39 39 H 1.08006 * 120.02446 * 179.74917 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1189 2.0727 1.1795 5 1 2.6439 3.0161 1.2094 6 6 1.5453 1.5599 2.3365 7 7 1.0080 0.3607 2.3278 8 14 1.5380 2.5751 3.9046 9 1 0.8007 3.8427 3.6700 10 1 0.8713 1.8084 4.9876 11 1 2.9354 2.8816 4.3024 12 6 2.3687 1.9721 -1.1595 13 8 2.3724 1.3318 -2.1897 14 6 2.7561 3.4284 -1.1762 15 6 4.0747 3.6141 -0.4229 16 6 1.6610 4.2551 -0.4990 17 6 2.9230 3.8875 -2.6019 18 6 2.1376 4.9131 -3.0938 19 6 2.2859 5.3316 -4.4024 20 6 3.2297 4.7314 -5.2192 21 9 3.3784 5.1446 -6.4968 22 6 4.0166 3.7045 -4.7277 23 6 3.8633 3.2822 -3.4182 24 9 4.6304 2.2795 -2.9372 25 1 -0.3634 0.3631 -0.9614 26 1 -0.3634 -1.0141 0.1664 27 1 -0.3633 0.6511 0.7952 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.6073 0.0028 3.1354 31 1 4.2597 4.6774 -0.2709 32 1 4.0145 3.1140 0.5438 33 1 4.8894 3.1831 -1.0049 34 1 0.7015 4.0427 -0.9705 35 1 1.6116 3.9957 0.5585 36 1 1.8900 5.3157 -0.6027 37 1 1.4044 5.3846 -2.4563 38 1 1.6684 6.1297 -4.7872 39 1 4.7501 3.2331 -5.3651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888556195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:11 Heat of formation + Delta-G solvation = -68.584307 kcal Electronic energy + Delta-G solvation = -25418.770690 eV Core-core repulsion = 21577.952551 eV Total energy + Delta-G solvation = -3840.818140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.84889 -48.46053 -39.79752 -38.10163 -35.18018 -34.59372 -31.47336 -30.68194 -29.93317 -28.56633 -26.90487 -25.14925 -23.52444 -22.54879 -22.36289 -20.44490 -18.87401 -18.00067 -17.44387 -16.78193 -15.79592 -15.60806 -15.55303 -15.03036 -14.88784 -14.39392 -14.30714 -14.06890 -13.80797 -13.72209 -13.07942 -12.74960 -12.44711 -12.35907 -12.19822 -11.75666 -11.61636 -11.54288 -11.34198 -11.24951 -11.18516 -10.98858 -10.94547 -10.64705 -10.31451 -10.30153 -9.85679 -9.56673 -8.87070 -8.78095 -8.33792 -8.14965 -7.76609 -6.26400 -3.93281 1.22626 1.29809 3.05611 3.14118 3.15129 3.60271 3.89376 4.00524 4.14950 4.68422 4.74239 4.87260 4.93816 5.00538 5.06656 5.40316 5.62750 5.72012 5.79376 6.01092 6.07275 6.13076 6.18433 6.24591 6.35559 6.42116 6.47199 6.54362 6.68541 6.78442 6.84407 6.90482 6.96101 7.03944 7.12281 7.32608 7.53913 7.75134 7.84799 8.44041 9.02728 9.53333 9.92780 10.58922 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.005081 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.974524 B = 5509.333019 C = 5886.156130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.129 3.871 3 N -0.437 5.437 4 C -0.336 4.336 5 H 0.118 0.882 6 C 0.031 3.969 7 N -0.864 5.864 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.465 3.535 13 O -0.602 6.602 14 C -0.025 4.025 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.089 4.089 18 C -0.065 4.065 19 C -0.172 4.172 20 C 0.114 3.886 21 F -0.140 7.140 22 C -0.202 4.202 23 C 0.169 3.831 24 F -0.117 7.117 25 H 0.011 0.989 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 8.651 -5.009 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.007 3.993 3 N -0.154 5.154 4 C -0.463 4.463 5 H 0.135 0.865 6 C -0.172 4.172 7 N -0.504 5.504 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.253 3.747 13 O -0.488 6.488 14 C -0.028 4.028 15 C -0.213 4.213 16 C -0.213 4.213 17 C -0.091 4.091 18 C -0.083 4.083 19 C -0.191 4.191 20 C 0.095 3.905 21 F -0.119 7.119 22 C -0.222 4.222 23 C 0.149 3.851 24 F -0.095 7.095 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.203 8.127 -5.349 9.975 hybrid contribution 0.013 0.259 0.604 0.657 sum 2.215 8.385 -4.745 9.886 Atomic orbital electron populations 1.21948 0.97165 1.00285 0.98939 1.21485 0.94014 0.82933 1.00904 1.43689 1.55052 1.11863 1.04838 1.20102 1.34589 1.05889 0.85683 0.86538 1.25287 0.96175 0.96295 0.99484 1.70221 1.37009 1.14765 1.28356 0.86129 0.78728 0.79619 0.81087 1.19751 1.20798 1.19821 1.19596 0.83491 0.87768 0.83871 1.90541 1.60071 1.65366 1.32865 1.19351 0.97856 0.95412 0.90159 1.22169 0.94983 1.01647 1.02486 1.22279 0.96823 0.97370 1.04822 1.19834 0.95907 0.96747 0.96577 1.20928 0.97799 0.95223 0.94343 1.21054 1.00338 1.03193 0.94508 1.17232 0.97880 0.96094 0.79282 1.91480 1.95030 1.89393 1.35985 1.20931 1.04551 1.00791 0.95904 1.17028 0.90863 0.86051 0.91119 1.91518 1.72599 1.57495 1.87897 0.96943 0.94665 0.90447 0.94684 0.87105 0.92287 0.92695 0.88824 0.92455 0.92747 0.87738 0.93139 0.83705 0.84575 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.24 37.16 0.34 -2.55 16 2 C 0.13 3.17 5.52 -4.04 -0.02 3.15 16 3 N -0.44 -10.60 2.63 -114.81 -0.30 -10.90 16 4 C -0.34 -7.73 6.69 -14.93 -0.10 -7.83 16 5 H 0.12 2.47 3.13 -52.49 -0.16 2.30 16 6 C 0.03 0.72 5.12 -17.47 -0.09 0.63 16 7 N -0.86 -20.72 7.43 55.50 0.41 -20.31 16 8 Si 0.92 18.02 29.56 -169.99 -5.02 13.00 16 9 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 C 0.47 11.01 6.04 -10.99 -0.07 10.95 16 13 O -0.60 -15.92 13.64 5.54 0.08 -15.84 16 14 C -0.02 -0.47 0.49 -156.81 -0.08 -0.55 16 15 C -0.16 -2.75 8.04 37.16 0.30 -2.45 16 16 C -0.16 -2.66 6.68 37.16 0.25 -2.41 16 17 C -0.09 -1.60 4.46 -104.54 -0.47 -2.06 16 18 C -0.06 -0.96 8.98 -39.60 -0.36 -1.32 16 19 C -0.17 -2.32 10.03 -39.50 -0.40 -2.72 16 20 C 0.11 1.68 7.30 -39.43 -0.29 1.39 16 21 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 22 C -0.20 -3.20 10.01 -39.45 -0.39 -3.59 16 23 C 0.17 3.11 6.03 -39.43 -0.24 2.87 16 24 F -0.12 -2.39 13.56 2.25 0.03 -2.36 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.89 6.16 -51.93 -0.32 1.57 16 28 H 0.03 0.89 7.18 -51.93 -0.37 0.51 16 29 H 0.11 2.83 5.91 -51.93 -0.31 2.52 16 30 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 31 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.09 1.76 5.10 -51.93 -0.27 1.49 16 33 H 0.06 1.03 6.07 -51.93 -0.32 0.72 16 34 H 0.05 0.94 7.85 -51.93 -0.41 0.54 16 35 H 0.10 1.92 4.67 -51.93 -0.24 1.68 16 36 H 0.05 0.69 7.13 -51.93 -0.37 0.32 16 37 H 0.15 1.83 5.89 -52.49 -0.31 1.52 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -27.09 307.91 -6.05 -33.14 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.32 Total: 7.06 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.60 Total: -6.48 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.11 Total: -31.21 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.08 Total: -15.84 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.29 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.09 -6.05 -33.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.446 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds