Wall clock time and date at job start Tue Mar 31 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47386 * 2 1 4 4 N 1.46496 * 109.47279 * 239.99893 * 2 1 3 5 5 C 1.34771 * 120.00262 * 85.00330 * 4 2 1 6 6 O 1.21289 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00307 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47276 * 179.97438 * 7 5 4 9 9 H 1.09006 * 109.47026 * 304.99946 * 8 7 5 10 10 C 1.50698 * 109.47097 * 64.99791 * 8 7 5 11 11 H 1.08004 * 119.99892 * 234.68174 * 10 8 7 12 12 C 1.37876 * 120.00362 * 54.68172 * 10 8 7 13 13 N 1.31514 * 119.99826 * 4.86966 * 12 10 8 14 14 Si 1.86803 * 120.00217 * 184.87441 * 12 10 8 15 15 H 1.48497 * 109.46957 * 59.99657 * 14 12 10 16 16 H 1.48499 * 109.46974 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46918 * 299.99615 * 14 12 10 18 18 C 1.50702 * 109.47237 * 184.99683 * 8 7 5 19 19 C 1.38233 * 119.99815 * 151.48548 * 18 8 7 20 20 C 1.38237 * 119.99648 * 179.79327 * 19 18 8 21 21 C 1.38229 * 120.00151 * 0.43380 * 20 19 18 22 22 C 1.38237 * 119.99941 * 359.82041 * 21 20 19 23 23 C 1.38229 * 120.00047 * 359.97238 * 22 21 20 24 24 C 1.53003 * 109.47219 * 119.99758 * 2 1 3 25 25 F 1.39899 * 109.47305 * 185.00284 * 24 2 1 26 26 F 1.39906 * 109.46955 * 305.00265 * 24 2 1 27 27 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47544 * 300.00046 * 1 2 3 29 29 H 1.09002 * 109.47098 * 60.00039 * 1 2 3 30 30 H 0.97003 * 119.99922 * 264.99568 * 4 2 1 31 31 H 1.08994 * 109.47473 * 59.99553 * 7 5 4 32 32 H 1.09002 * 109.46812 * 299.99323 * 7 5 4 33 33 H 0.97000 * 120.00260 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.00199 * 359.97438 * 19 18 8 35 35 H 1.08010 * 119.99704 * 180.27426 * 20 19 18 36 36 H 1.08002 * 120.00108 * 179.83247 * 21 20 19 37 37 H 1.08001 * 120.00257 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00160 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46755 * 65.00062 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 6 2.7000 0.2541 -4.7590 9 1 1.7201 0.7129 -4.8913 10 6 3.7213 1.3245 -4.4723 11 1 3.4377 2.3659 -4.5118 12 6 5.0177 0.9745 -4.1597 13 7 5.3874 -0.2868 -4.2050 14 14 6.2490 2.2917 -3.6715 15 1 5.7648 2.9963 -2.4573 16 1 7.5624 1.6602 -3.3862 17 1 6.3985 3.2657 -4.7825 18 6 3.0838 -0.4824 -6.0165 19 6 2.6505 -0.0229 -7.2461 20 6 3.0061 -0.6961 -8.4000 21 6 3.7874 -1.8338 -8.3235 22 6 4.2162 -2.2963 -7.0934 23 6 3.8643 -1.6208 -5.9399 24 6 2.0400 -0.7212 1.2493 25 9 3.4342 -0.6224 1.3083 26 9 1.4821 -0.1314 2.3887 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.2491 -1.6318 -1.1525 31 1 1.9761 -1.5507 -3.8325 32 1 3.6481 -1.1214 -3.3984 33 1 6.2994 -0.5332 -3.9847 34 1 2.0367 0.8637 -7.3056 35 1 2.6712 -0.3345 -9.3611 36 1 4.0629 -2.3613 -9.2247 37 1 4.8263 -3.1855 -7.0335 38 1 4.1997 -1.9819 -4.9790 39 1 1.7516 -1.7715 1.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894040468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:34 Heat of formation + Delta-G solvation = -136.476684 kcal Electronic energy + Delta-G solvation = -24332.874263 eV Core-core repulsion = 20489.112090 eV Total energy + Delta-G solvation = -3843.762174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.99882 -48.02184 -40.76370 -39.66114 -36.80538 -35.85831 -33.03016 -32.15687 -31.35932 -29.84188 -27.74286 -27.29277 -24.54298 -23.16321 -22.62709 -21.70983 -20.95613 -18.70252 -18.57985 -18.22752 -17.84819 -17.50796 -16.88550 -16.80288 -15.95494 -15.90012 -15.43931 -15.22697 -14.92351 -14.82714 -14.45251 -14.40840 -14.30932 -13.77655 -13.58709 -13.36896 -13.24940 -13.24054 -13.10264 -12.83277 -12.80562 -12.69306 -12.21885 -11.86972 -11.75004 -11.66671 -11.07102 -11.03985 -10.64642 -10.33027 -10.07601 -9.38140 -9.10451 -7.95058 -6.10445 0.90776 1.01924 1.35475 1.37517 1.44860 1.95246 2.15550 2.44057 2.79348 3.19236 3.19677 3.39303 3.57811 3.78263 4.14062 4.31547 4.33416 4.37367 4.43934 4.53484 4.69059 4.71690 4.80508 4.89250 4.92833 5.10305 5.16430 5.19664 5.38583 5.50203 5.55822 5.65305 5.69459 5.91206 5.96683 6.11327 6.36724 6.43693 6.59800 6.69731 6.84649 7.51298 7.56147 8.93434 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.004846 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.129400 B = 5776.254768 C = 6577.442480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 H 0.068 0.932 4 N -0.724 5.724 5 C 0.526 3.474 6 O -0.567 6.567 7 C -0.128 4.128 8 C 0.088 3.912 9 H 0.016 0.984 10 C -0.493 4.493 11 H 0.026 0.974 12 C 0.036 3.964 13 N -0.882 5.882 14 Si 0.924 3.076 15 H -0.292 1.292 16 H -0.275 1.275 17 H -0.282 1.282 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.080 4.080 24 C 0.262 3.738 25 F -0.218 7.218 26 F -0.203 7.203 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.414 0.586 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.262 0.738 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -9.449 5.339 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 H 0.086 0.914 4 N -0.379 5.379 5 C 0.315 3.685 6 O -0.445 6.445 7 C -0.168 4.168 8 C 0.069 3.931 9 H 0.035 0.965 10 C -0.531 4.531 11 H 0.044 0.956 12 C -0.163 4.163 13 N -0.521 5.521 14 Si 0.753 3.247 15 H -0.219 1.219 16 H -0.200 1.200 17 H -0.208 1.208 18 C -0.051 4.051 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.167 4.167 22 C -0.165 4.165 23 C -0.099 4.099 24 C 0.208 3.792 25 F -0.200 7.200 26 F -0.184 7.184 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.252 0.748 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.864 -8.681 5.363 12.298 hybrid contribution 1.163 1.153 0.420 1.690 sum -5.701 -7.528 5.783 11.074 Atomic orbital electron populations 1.22056 0.91434 1.04463 1.03130 1.21824 0.97421 0.97745 0.84514 0.91412 1.45773 1.69331 1.14476 1.08364 1.21185 0.75124 0.86940 0.85247 1.90612 1.50315 1.17925 1.85603 1.21769 1.03991 0.98651 0.92373 1.17528 0.94216 0.92353 0.88989 0.96510 1.20930 0.94847 0.91995 1.45279 0.95562 1.25180 0.98601 0.96786 0.95760 1.69725 1.18259 1.15227 1.48849 0.86153 0.79588 0.80936 0.78073 1.21905 1.20031 1.20806 1.20288 0.95884 0.93604 0.95298 1.21074 1.02558 1.00139 0.93243 1.21152 1.00189 0.96774 0.97755 1.21196 1.00027 0.97574 0.97899 1.21368 1.01236 1.00821 0.93039 1.21326 0.94987 0.94354 0.99206 1.22395 0.73729 1.00803 0.82273 1.93000 1.32645 1.97675 1.96632 1.92973 1.84961 1.87209 1.53283 0.88988 0.89837 0.93078 0.74849 0.89945 0.85870 0.92806 0.87988 0.85137 0.84707 0.85553 0.85023 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.32 71.98 0.67 -2.63 16 2 C 0.09 2.44 2.75 44.99 0.12 2.57 16 3 H 0.07 2.36 7.58 -2.39 -0.02 2.34 16 4 N -0.72 -21.34 5.06 -442.55 -2.24 -23.58 16 5 C 0.53 21.51 7.54 87.66 0.66 22.17 16 6 O -0.57 -28.37 14.65 -3.06 -0.04 -28.41 16 7 C -0.13 -5.28 4.07 29.85 0.12 -5.16 16 8 C 0.09 4.29 1.97 -12.28 -0.02 4.26 16 9 H 0.02 0.84 7.91 -2.38 -0.02 0.82 16 10 C -0.49 -27.27 7.27 25.60 0.19 -27.08 16 11 H 0.03 1.57 7.82 -2.91 -0.02 1.54 16 12 C 0.04 1.94 5.12 84.65 0.43 2.38 16 13 N -0.88 -44.42 7.99 21.45 0.17 -44.25 16 14 Si 0.92 44.91 29.54 68.60 2.03 46.94 16 15 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 18 C -0.05 -2.26 4.69 -19.87 -0.09 -2.36 16 19 C -0.15 -6.38 9.71 22.27 0.22 -6.16 16 20 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 21 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 22 C -0.15 -5.32 10.05 22.27 0.22 -5.09 16 23 C -0.08 -3.37 7.45 22.27 0.17 -3.20 16 24 C 0.26 5.45 4.87 71.98 0.35 5.80 16 25 F -0.22 -6.12 17.32 44.97 0.78 -5.34 16 26 F -0.20 -4.54 16.62 44.97 0.75 -3.79 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.58 7.69 -2.39 -0.02 1.57 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.41 9.11 8.60 -92.71 -0.80 8.31 16 31 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.12 5.40 4.71 -2.39 -0.01 5.38 16 33 H 0.26 12.87 8.31 -92.71 -0.77 12.09 16 34 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.13 5.64 5.18 -2.91 -0.02 5.63 16 39 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -66.49 329.99 5.20 -61.29 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.28 Total: 21.22 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.48 Total: -24.07 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -2.07 Total: -67.83 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.04 Total: -28.41 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.53 Total: -9.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.49 5.20 -61.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894040468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.186 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds