Wall clock time and date at job start Tue Mar 31 2020 08:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00400 * 2 1 4 4 C 1.53006 * 109.49925 * 294.70968 * 3 2 1 5 5 F 1.39894 * 109.46632 * 186.09874 * 4 3 2 6 6 F 1.39905 * 109.46587 * 306.09404 * 4 3 2 7 7 F 1.39899 * 109.47277 * 66.09600 * 4 3 2 8 8 C 1.53114 * 109.53643 * 174.61062 * 3 2 1 9 9 C 1.53120 * 109.15921 * 297.69078 * 8 3 2 10 10 C 1.53044 * 109.28025 * 302.34782 * 9 8 3 11 11 N 1.46845 * 109.51908 * 59.17824 * 10 9 8 12 12 C 1.46909 * 110.99410 * 174.16341 * 11 10 9 13 13 C 1.53001 * 109.47105 * 294.20739 * 12 11 10 14 14 H 1.09000 * 109.46950 * 59.99881 * 13 12 11 15 15 O 1.42895 * 109.47122 * 300.00511 * 13 12 11 16 16 C 1.50700 * 109.47133 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99599 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99742 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00282 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99604 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47407 * 89.99776 * 20 18 16 22 22 H 1.48496 * 109.46738 * 209.99941 * 20 18 16 23 23 H 1.48508 * 109.47248 * 329.99629 * 20 18 16 24 24 C 1.46843 * 111.20061 * 298.25623 * 11 10 9 25 25 H 1.09002 * 109.47299 * 306.21948 * 1 2 3 26 26 H 1.09003 * 109.47073 * 66.21027 * 1 2 3 27 27 H 1.08999 * 109.47456 * 186.20828 * 1 2 3 28 28 H 1.09000 * 109.52567 * 57.59646 * 8 3 2 29 29 H 1.08994 * 109.52420 * 177.72290 * 8 3 2 30 30 H 1.09000 * 109.50588 * 62.28675 * 9 8 3 31 31 H 1.09004 * 109.50272 * 182.36345 * 9 8 3 32 32 H 1.08998 * 109.46000 * 299.16339 * 10 9 8 33 33 H 1.09001 * 109.46212 * 179.19646 * 10 9 8 34 34 H 1.09004 * 109.46653 * 174.21136 * 12 11 10 35 35 H 1.09003 * 109.47089 * 54.20784 * 12 11 10 36 36 H 0.96700 * 114.00118 * 299.99436 * 15 13 12 37 37 H 0.97000 * 120.00390 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.46136 * 181.76161 * 24 11 10 39 39 H 1.09000 * 109.46341 * 301.72994 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6673 2.0172 -1.3102 5 9 2.3492 3.2373 -1.3704 6 9 2.0503 1.2152 -2.3907 7 9 0.2890 2.2499 -1.3676 8 6 3.5310 1.1887 0.1355 9 6 3.8669 0.5297 1.4762 10 6 3.2610 1.3573 2.6120 11 7 1.8053 1.4387 2.4373 12 6 1.1743 2.1081 3.5827 13 6 1.3485 1.2475 4.8357 14 1 2.4109 1.1086 5.0362 15 8 0.7324 -0.0251 4.6290 16 6 0.7007 1.9339 6.0106 17 1 0.2130 2.8883 5.8767 18 6 0.7305 1.3435 7.2562 19 7 1.3248 0.1817 7.4192 20 14 -0.0731 2.1940 8.7123 21 1 -1.4906 1.7638 8.8163 22 1 0.6477 1.8289 9.9582 23 1 -0.0152 3.6654 8.5200 24 6 1.4582 2.1105 1.1786 25 1 -0.3634 0.6072 0.8291 26 1 -0.3633 0.4146 -0.9404 27 1 -0.3634 -1.0216 0.1111 28 1 3.9236 0.5793 -0.6785 29 1 3.9776 2.1821 0.0949 30 1 3.4533 -0.4785 1.4999 31 1 4.9492 0.4819 1.5971 32 1 3.6854 2.3612 2.5962 33 1 3.4863 0.8830 3.5672 34 1 0.1119 2.2469 3.3822 35 1 1.6443 3.0788 3.7404 36 1 -0.2157 0.0221 4.4450 37 1 1.3455 -0.2339 8.2954 38 1 0.3740 2.1833 1.0926 39 1 1.8910 3.1109 1.1695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119759047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:50 Heat of formation + Delta-G solvation = -237.307725 kcal Electronic energy + Delta-G solvation = -26498.009353 eV Core-core repulsion = 22219.105592 eV Total energy + Delta-G solvation = -4278.903761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.28807 -47.81199 -47.70032 -39.81094 -37.03132 -35.28771 -32.94875 -32.08178 -30.91311 -28.46486 -26.70453 -25.98786 -25.26871 -22.97506 -22.35960 -20.45525 -19.77597 -18.47450 -18.41996 -18.01283 -17.01908 -16.16117 -15.58428 -15.03599 -14.88305 -14.62848 -14.59305 -14.49634 -14.31629 -14.24545 -14.09203 -13.91382 -13.85792 -13.60752 -13.39142 -12.97731 -12.58681 -12.51391 -12.27467 -12.11129 -11.38651 -11.22216 -10.96579 -10.85265 -10.82690 -10.72754 -10.51785 -10.27805 -10.08779 -9.67412 -9.00377 -8.59050 -8.13697 -7.75155 -6.02702 -4.21425 2.52921 3.25817 3.30667 3.33349 3.35498 3.54263 3.80738 4.14972 4.29781 4.44249 4.60044 4.64580 5.10555 5.21933 5.25308 5.34337 5.37480 5.42472 5.56790 5.66832 5.71240 5.79290 5.88429 5.94397 6.06027 6.19688 6.39054 6.45414 6.56239 6.74804 6.91489 7.41916 7.46719 7.73936 7.83865 8.16944 8.82257 9.44305 9.60362 11.01304 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.004104 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.950756 B = 6821.401058 C = 6942.726395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.332 6.332 3 C 0.090 3.910 4 C 0.425 3.575 5 F -0.181 7.181 6 F -0.176 7.176 7 F -0.182 7.182 8 C -0.110 4.110 9 C -0.108 4.108 10 C 0.051 3.949 11 N -0.510 5.510 12 C 0.031 3.969 13 C 0.239 3.761 14 H 0.056 0.944 15 O -0.552 6.552 16 C -0.576 4.576 17 H 0.054 0.946 18 C 0.081 3.919 19 N -0.857 5.857 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.026 3.974 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.342 0.658 37 H 0.261 0.739 38 H 0.088 0.912 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 2.833 -16.641 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.249 6.249 3 C 0.047 3.953 4 C 0.370 3.630 5 F -0.163 7.163 6 F -0.158 7.158 7 F -0.164 7.164 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.077 4.077 11 N -0.234 5.234 12 C -0.096 4.096 13 C 0.181 3.819 14 H 0.073 0.927 15 O -0.353 6.353 16 C -0.615 4.615 17 H 0.072 0.928 18 C -0.125 4.125 19 N -0.493 5.493 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.103 4.103 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.185 0.815 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.535 1.838 -16.446 16.741 hybrid contribution -1.086 2.028 0.446 2.343 sum 1.449 3.866 -16.000 16.524 Atomic orbital electron populations 1.23185 0.80337 1.04054 1.00975 1.88108 1.20622 1.22400 1.93789 1.22678 0.98021 0.86163 0.88464 1.21767 0.74412 0.77851 0.88937 1.93164 1.79835 1.46380 1.96872 1.93180 1.90859 1.73296 1.58442 1.93136 1.31644 1.94648 1.96945 1.21678 0.89259 1.02822 1.00948 1.21502 1.00144 1.01081 0.91812 1.22198 0.87260 0.98105 1.00106 1.61856 1.09550 1.51796 1.00223 1.23148 0.97915 0.96588 0.91956 1.19308 0.94791 0.80786 0.87006 0.92680 1.86575 1.23556 1.31613 1.93560 1.21641 1.39179 1.06593 0.94051 0.92785 1.25001 0.94414 0.94474 0.98610 1.70072 1.40921 1.15207 1.23076 0.86688 0.79610 0.79921 0.82230 1.20510 1.21108 1.19914 1.22607 1.01611 0.95169 0.90865 0.91983 0.93540 0.88861 0.90049 0.89827 0.89586 0.90961 0.95522 0.88841 0.91816 0.95323 0.81539 0.92955 0.89409 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.85 101.05 1.00 1.13 16 2 O -0.33 -4.82 9.53 -35.23 -0.34 -5.16 16 3 C 0.09 1.20 0.37 -90.54 -0.03 1.17 16 4 C 0.43 5.43 2.23 37.16 0.08 5.51 16 5 F -0.18 -2.26 16.22 2.25 0.04 -2.23 16 6 F -0.18 -2.30 16.94 2.25 0.04 -2.26 16 7 F -0.18 -2.32 13.79 2.25 0.03 -2.29 16 8 C -0.11 -1.33 4.77 -26.61 -0.13 -1.46 16 9 C -0.11 -1.44 5.94 -26.65 -0.16 -1.60 16 10 C 0.05 0.82 5.29 -3.83 -0.02 0.80 16 11 N -0.51 -8.72 4.41 -234.66 -1.03 -9.76 16 12 C 0.03 0.61 4.56 -3.82 -0.02 0.59 16 13 C 0.24 5.81 2.70 -27.88 -0.08 5.73 16 14 H 0.06 1.47 6.43 -51.93 -0.33 1.14 16 15 O -0.55 -13.90 12.60 -35.23 -0.44 -14.34 16 16 C -0.58 -15.36 8.76 -34.44 -0.30 -15.66 16 17 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 18 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 19 N -0.86 -24.89 12.84 55.43 0.71 -24.17 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.03 0.38 3.45 -3.84 -0.01 0.37 16 25 H 0.06 0.83 5.98 -51.93 -0.31 0.51 16 26 H 0.05 0.54 5.96 -51.93 -0.31 0.23 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 29 H 0.08 0.92 7.59 -51.93 -0.39 0.52 16 30 H 0.09 1.30 7.80 -51.93 -0.41 0.89 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 1.72 6.21 -51.93 -0.32 1.40 16 34 H 0.06 1.21 7.99 -51.93 -0.41 0.80 16 35 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.34 7.76 9.04 45.56 0.41 8.17 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.09 1.24 5.73 -51.93 -0.30 0.94 16 39 H 0.05 0.65 7.94 -51.93 -0.41 0.24 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -29.41 317.81 -5.43 -34.84 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.44 Total: 6.11 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 0.24 Total: -1.28 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.32 Total: -33.93 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.78 Total: -19.50 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.78 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.41 -5.43 -34.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119759047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.469 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds