Wall clock time and date at job start Tue Mar 31 2020 08:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00400 * 2 1 4 4 C 1.53006 * 109.49925 * 294.70968 * 3 2 1 5 5 F 1.39894 * 109.46632 * 186.09874 * 4 3 2 6 6 F 1.39905 * 109.46587 * 306.09404 * 4 3 2 7 7 F 1.39899 * 109.47277 * 66.09600 * 4 3 2 8 8 C 1.53114 * 109.53643 * 174.61062 * 3 2 1 9 9 C 1.53120 * 109.15921 * 297.69078 * 8 3 2 10 10 C 1.53044 * 109.28025 * 302.34782 * 9 8 3 11 11 N 1.46845 * 109.51908 * 59.17824 * 10 9 8 12 12 C 1.46909 * 110.99410 * 174.16341 * 11 10 9 13 13 C 1.53001 * 109.47105 * 294.20739 * 12 11 10 14 14 H 1.09000 * 109.46950 * 59.99881 * 13 12 11 15 15 O 1.42895 * 109.47122 * 300.00511 * 13 12 11 16 16 C 1.50700 * 109.47133 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99599 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99742 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00282 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99604 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47407 * 89.99776 * 20 18 16 22 22 H 1.48496 * 109.46738 * 209.99941 * 20 18 16 23 23 H 1.48508 * 109.47248 * 329.99629 * 20 18 16 24 24 C 1.46843 * 111.20061 * 298.25623 * 11 10 9 25 25 H 1.09002 * 109.47299 * 306.21948 * 1 2 3 26 26 H 1.09003 * 109.47073 * 66.21027 * 1 2 3 27 27 H 1.08999 * 109.47456 * 186.20828 * 1 2 3 28 28 H 1.09000 * 109.52567 * 57.59646 * 8 3 2 29 29 H 1.08994 * 109.52420 * 177.72290 * 8 3 2 30 30 H 1.09000 * 109.50588 * 62.28675 * 9 8 3 31 31 H 1.09004 * 109.50272 * 182.36345 * 9 8 3 32 32 H 1.08998 * 109.46000 * 299.16339 * 10 9 8 33 33 H 1.09001 * 109.46212 * 179.19646 * 10 9 8 34 34 H 1.09004 * 109.46653 * 174.21136 * 12 11 10 35 35 H 1.09003 * 109.47089 * 54.20784 * 12 11 10 36 36 H 0.96700 * 114.00118 * 299.99436 * 15 13 12 37 37 H 0.97000 * 120.00390 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.46136 * 181.76161 * 24 11 10 39 39 H 1.09000 * 109.46341 * 301.72994 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6673 2.0172 -1.3102 5 9 2.3492 3.2373 -1.3704 6 9 2.0503 1.2152 -2.3907 7 9 0.2890 2.2499 -1.3676 8 6 3.5310 1.1887 0.1355 9 6 3.8669 0.5297 1.4762 10 6 3.2610 1.3573 2.6120 11 7 1.8053 1.4387 2.4373 12 6 1.1743 2.1081 3.5827 13 6 1.3485 1.2475 4.8357 14 1 2.4109 1.1086 5.0362 15 8 0.7324 -0.0251 4.6290 16 6 0.7007 1.9339 6.0106 17 1 0.2130 2.8883 5.8767 18 6 0.7305 1.3435 7.2562 19 7 1.3248 0.1817 7.4192 20 14 -0.0731 2.1940 8.7123 21 1 -1.4906 1.7638 8.8163 22 1 0.6477 1.8289 9.9582 23 1 -0.0152 3.6654 8.5200 24 6 1.4582 2.1105 1.1786 25 1 -0.3634 0.6072 0.8291 26 1 -0.3633 0.4146 -0.9404 27 1 -0.3634 -1.0216 0.1111 28 1 3.9236 0.5793 -0.6785 29 1 3.9776 2.1821 0.0949 30 1 3.4533 -0.4785 1.4999 31 1 4.9492 0.4819 1.5971 32 1 3.6854 2.3612 2.5962 33 1 3.4863 0.8830 3.5672 34 1 0.1119 2.2469 3.3822 35 1 1.6443 3.0788 3.7404 36 1 -0.2157 0.0221 4.4450 37 1 1.3455 -0.2339 8.2954 38 1 0.3740 2.1833 1.0926 39 1 1.8910 3.1109 1.1695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119759047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:50 Heat of formation + Delta-G solvation = -259.098186 kcal Electronic energy + Delta-G solvation = -26498.954258 eV Core-core repulsion = 22219.105592 eV Total energy + Delta-G solvation = -4279.848666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.28918 -48.80783 -48.70148 -40.97062 -38.46329 -36.91615 -34.32910 -34.09744 -32.04043 -30.20706 -27.83555 -27.07298 -26.92049 -24.44855 -23.55414 -21.99584 -20.99060 -19.53498 -19.42692 -19.18948 -18.85969 -17.35482 -16.74904 -16.59624 -16.39793 -16.07014 -15.99829 -15.70358 -15.54249 -15.46240 -15.14369 -15.02090 -14.92112 -14.84613 -14.76282 -14.49617 -13.98487 -13.71373 -13.41569 -13.26789 -13.10757 -12.83302 -12.75738 -12.52523 -12.28512 -12.03761 -11.85652 -11.73522 -11.43915 -10.96374 -10.72845 -10.66252 -10.05582 -9.15135 -8.11248 -6.36909 1.41758 1.42369 1.49508 1.52793 2.25853 2.40447 2.51811 2.78734 3.09428 3.15236 3.16890 3.52861 3.57846 4.03656 4.06730 4.23813 4.26788 4.36302 4.41249 4.41512 4.57189 4.58137 4.58631 4.71620 4.82795 4.92114 4.94428 5.02817 5.12320 5.39882 5.62875 5.76960 5.88489 5.98559 6.17736 6.22176 6.76446 7.37646 7.66259 8.92998 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.004104 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.950756 B = 6821.401058 C = 6942.726395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.348 6.348 3 C 0.089 3.911 4 C 0.432 3.568 5 F -0.177 7.177 6 F -0.176 7.176 7 F -0.182 7.182 8 C -0.108 4.108 9 C -0.099 4.099 10 C 0.050 3.950 11 N -0.520 5.520 12 C 0.049 3.951 13 C 0.240 3.760 14 H 0.023 0.977 15 O -0.567 6.567 16 C -0.588 4.588 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.028 3.972 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.351 0.649 37 H 0.261 0.739 38 H 0.091 0.909 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 3.972 -17.715 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.266 6.266 3 C 0.046 3.954 4 C 0.377 3.623 5 F -0.159 7.159 6 F -0.158 7.158 7 F -0.164 7.164 8 C -0.145 4.145 9 C -0.137 4.137 10 C -0.078 4.078 11 N -0.244 5.244 12 C -0.079 4.079 13 C 0.182 3.818 14 H 0.041 0.959 15 O -0.370 6.370 16 C -0.627 4.627 17 H 0.076 0.924 18 C -0.174 4.174 19 N -0.535 5.535 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.292 2.991 -17.540 17.940 hybrid contribution -1.004 1.655 0.739 2.072 sum 1.288 4.646 -16.801 17.479 Atomic orbital electron populations 1.23262 0.79635 1.04633 1.01174 1.88094 1.21490 1.23120 1.93867 1.22711 0.98711 0.85665 0.88288 1.21552 0.74425 0.77820 0.88518 1.93175 1.79752 1.46113 1.96837 1.93184 1.90865 1.73361 1.58349 1.93139 1.31660 1.94634 1.96924 1.21740 0.88503 1.03939 1.00345 1.21417 1.01256 0.99421 0.91566 1.22192 0.86982 0.98913 0.99720 1.61730 1.10110 1.52130 1.00469 1.22722 0.98602 0.95434 0.91116 1.19149 0.92735 0.80970 0.88913 0.95887 1.86523 1.24374 1.32392 1.93746 1.22057 1.38762 1.06758 0.95095 0.92352 1.25836 0.94948 0.95031 1.01551 1.70212 1.42651 1.16937 1.23716 0.85608 0.78603 0.79095 0.78538 1.19890 1.21036 1.18986 1.22625 1.02076 0.95588 0.89804 0.92827 0.92435 0.88001 0.88612 0.88113 0.91608 0.88569 0.94333 0.92166 0.91156 0.95314 0.80518 0.93044 0.89074 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.85 113.37 1.12 1.32 16 2 O -0.35 -9.62 9.53 -148.98 -1.42 -11.04 16 3 C 0.09 2.21 0.37 -10.74 0.00 2.20 16 4 C 0.43 9.99 2.23 71.98 0.16 10.15 16 5 F -0.18 -3.94 16.22 44.97 0.73 -3.22 16 6 F -0.18 -4.16 16.94 44.97 0.76 -3.40 16 7 F -0.18 -4.24 13.79 44.97 0.62 -3.62 16 8 C -0.11 -2.36 4.77 30.67 0.15 -2.21 16 9 C -0.10 -2.52 5.94 30.65 0.18 -2.34 16 10 C 0.05 1.58 5.29 86.33 0.46 2.04 16 11 N -0.52 -17.52 4.41 -896.33 -3.95 -21.47 16 12 C 0.05 1.90 4.56 86.30 0.39 2.30 16 13 C 0.24 11.91 2.70 29.85 0.08 11.99 16 14 H 0.02 1.30 6.43 -2.39 -0.02 1.28 16 15 O -0.57 -29.22 12.60 -148.98 -1.88 -31.10 16 16 C -0.59 -31.52 8.76 25.60 0.22 -31.30 16 17 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 18 C 0.03 1.59 5.40 84.66 0.46 2.05 16 19 N -0.90 -53.12 12.84 21.45 0.28 -52.85 16 20 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.03 0.75 3.45 86.33 0.30 1.05 16 25 H 0.05 1.37 5.98 -2.39 -0.01 1.36 16 26 H 0.06 1.24 5.96 -2.39 -0.01 1.23 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 29 H 0.10 1.88 7.59 -2.39 -0.02 1.86 16 30 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 31 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 2.31 6.21 -2.39 -0.01 2.30 16 34 H 0.07 2.62 7.99 -2.38 -0.02 2.60 16 35 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.35 16.18 9.04 -74.06 -0.67 15.51 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 38 H 0.09 2.42 5.73 -2.39 -0.01 2.41 16 39 H 0.06 1.45 7.94 -2.39 -0.02 1.43 16 Total: -1.00 -62.59 317.81 1.09 -61.49 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.41 Total: 23.29 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 3.51 Total: -2.76 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -3.67 Total: -74.32 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -3.30 Total: -42.13 kcal Atomic # 9 Polarization: -12.35 SS G_CDS: 2.11 Total: -10.24 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.59 1.09 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119759047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.605 kcal (2) G-P(sol) polarization free energy of solvation -62.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds