Wall clock time and date at job start Tue Mar 31 2020 07:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46935 * 2 1 4 4 C 1.35925 * 116.99966 * 180.02562 * 3 2 1 5 5 C 1.38742 * 120.04030 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.95447 * 179.97438 * 5 4 3 7 7 C 1.38387 * 120.04557 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 119.96060 * 180.02562 * 7 6 5 9 9 C 1.38351 * 120.08057 * 359.72966 * 7 6 5 10 10 C 1.38166 * 120.04417 * 0.55041 * 9 7 6 11 11 C 1.50695 * 120.02102 * 179.71745 * 10 9 7 12 12 N 1.46900 * 109.47400 * 259.72981 * 11 10 9 13 13 C 1.46895 * 111.00012 * 66.04951 * 12 11 10 14 14 C 1.52999 * 109.47328 * 63.26856 * 13 12 11 15 15 C 1.46903 * 110.99656 * 190.00345 * 12 11 10 16 16 C 1.50704 * 109.46630 * 169.59038 * 15 12 11 17 17 H 1.07998 * 120.00295 * 354.95839 * 16 15 12 18 18 C 1.37880 * 119.99629 * 174.96253 * 16 15 12 19 19 N 1.31517 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46938 * 90.00112 * 20 18 16 22 22 H 1.48498 * 109.47535 * 210.00247 * 20 18 16 23 23 H 1.48502 * 109.47307 * 330.00434 * 20 18 16 24 24 H 1.09008 * 109.47187 * 299.99897 * 1 2 3 25 25 H 1.08997 * 109.47657 * 59.99554 * 1 2 3 26 26 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46975 * 240.00656 * 2 1 3 28 28 H 1.08998 * 109.47236 * 120.00116 * 2 1 3 29 29 H 1.08001 * 120.02455 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.97834 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.97494 * 180.27912 * 9 7 6 32 32 H 1.09001 * 109.47032 * 139.72605 * 11 10 9 33 33 H 1.08999 * 109.47340 * 19.73478 * 11 10 9 34 34 H 1.09001 * 109.47380 * 183.27226 * 13 12 11 35 35 H 1.09003 * 109.47228 * 303.27012 * 13 12 11 36 36 H 1.09004 * 109.47026 * 180.61080 * 14 13 12 37 37 H 1.09001 * 109.47125 * 300.61317 * 14 13 12 38 38 H 1.08995 * 109.47043 * 60.61247 * 14 13 12 39 39 H 1.09006 * 109.46959 * 289.58612 * 15 12 11 40 40 H 1.08993 * 109.47478 * 49.58845 * 15 12 11 41 41 H 0.97006 * 119.99757 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1998 0.4258 -0.0016 6 6 5.5688 0.6088 -0.0027 7 6 6.0968 1.8880 -0.0033 8 17 7.8179 2.1155 -0.0053 9 6 5.2548 2.9858 -0.0084 10 6 3.8848 2.8068 -0.0015 11 6 2.9681 4.0029 -0.0006 12 7 2.4806 4.2453 1.3637 13 6 3.5796 4.6468 2.2519 14 6 4.1656 5.9753 1.7698 15 6 1.4068 5.2477 1.3687 16 6 0.7608 5.2851 2.7297 17 1 1.0568 4.5749 3.4876 18 6 -0.2082 6.2259 3.0073 19 7 -0.5690 7.0903 2.0841 20 14 -1.0093 6.2718 4.6941 21 1 -0.2335 7.1704 5.5863 22 1 -2.3994 6.7788 4.5683 23 1 -1.0320 4.9027 5.2688 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7882 -0.5727 -0.0016 30 1 6.2277 -0.2469 -0.0039 31 1 5.6687 3.9833 -0.0134 32 1 2.1217 3.8124 -0.6605 33 1 3.5132 4.8787 -0.3527 34 1 3.2018 4.7635 3.2676 35 1 4.3556 3.8813 2.2387 36 1 4.9882 6.2678 2.4225 37 1 4.5337 5.8614 0.7502 38 1 3.3925 6.7433 1.7934 39 1 1.8237 6.2280 1.1373 40 1 0.6604 4.9843 0.6193 41 1 -1.2510 7.7520 2.2793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139009084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:40 Heat of formation + Delta-G solvation = -38.432634 kcal Electronic energy + Delta-G solvation = -22281.089322 eV Core-core repulsion = 18993.375337 eV Total energy + Delta-G solvation = -3287.713985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35445 -39.11161 -38.39523 -37.06978 -34.78533 -33.16501 -32.35964 -31.14009 -30.35896 -28.78050 -26.26908 -24.99384 -24.92432 -22.82864 -22.48238 -20.87972 -19.02027 -18.33725 -17.41125 -17.11293 -17.03051 -16.71387 -16.35425 -15.86485 -15.54893 -14.87430 -14.77525 -14.48523 -14.24834 -13.98810 -13.63031 -13.59279 -13.38724 -13.16101 -13.10090 -12.88979 -12.71459 -12.62283 -12.46882 -12.38580 -12.14372 -12.04682 -11.93144 -11.56153 -11.46968 -11.37257 -11.20174 -10.57319 -9.96379 -9.00878 -8.83224 -8.15801 -6.24783 0.23017 0.28210 1.22445 1.40875 1.41864 1.53432 2.36250 2.41753 2.60325 3.16382 3.50926 3.70246 3.78525 4.11164 4.12307 4.13672 4.26693 4.29290 4.37544 4.40642 4.47051 4.54341 4.66923 4.74059 4.83868 4.88898 4.98129 4.99010 5.03835 5.13587 5.21271 5.24530 5.27460 5.37570 5.40804 5.51772 5.67198 5.70799 6.12056 6.42577 6.54308 6.71100 6.91739 7.44123 8.94519 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.004715 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.826154 B = 5937.482010 C = 7347.042087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.323 6.323 4 C 0.145 3.855 5 C -0.197 4.197 6 C -0.067 4.067 7 C -0.080 4.080 8 Cl -0.071 7.071 9 C -0.070 4.070 10 C -0.108 4.108 11 C 0.104 3.896 12 N -0.530 5.530 13 C 0.065 3.935 14 C -0.178 4.178 15 C 0.208 3.792 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.034 0.966 39 H -0.019 1.019 40 H -0.007 1.007 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.151 -15.818 -5.579 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.236 6.236 4 C 0.098 3.902 5 C -0.215 4.215 6 C -0.085 4.085 7 C -0.107 4.107 8 Cl -0.042 7.042 9 C -0.089 4.089 10 C -0.109 4.109 11 C -0.023 4.023 12 N -0.254 5.254 13 C -0.063 4.063 14 C -0.237 4.237 15 C 0.082 3.918 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.194 4.194 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.054 0.946 39 H -0.001 1.001 40 H 0.011 0.989 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.796 -15.961 -5.433 20.578 hybrid contribution -0.293 1.244 0.360 1.328 sum 11.504 -14.717 -5.073 19.356 Atomic orbital electron populations 1.21791 0.92639 1.03881 1.02487 1.23065 0.96336 0.80904 1.02478 1.86268 1.18740 1.31055 1.87550 1.19060 0.83197 0.93661 0.94301 1.21416 0.93253 0.98776 1.08103 1.21065 0.94812 0.95895 0.96777 1.20741 0.84663 0.94915 1.10398 1.98347 1.11092 1.97505 1.97277 1.20801 0.90919 0.99006 0.98173 1.19093 0.93173 0.92820 1.05818 1.20728 0.96347 0.93800 0.91459 1.62223 1.09747 1.45994 1.07392 1.21918 0.92448 0.94914 0.97064 1.22269 1.00737 0.99138 1.01546 1.19379 0.88418 0.88008 0.95975 1.21390 1.20445 1.14820 0.98574 0.92527 1.25821 0.97435 0.95092 1.01007 1.70087 1.32270 1.19731 1.35412 0.85474 0.77593 0.78534 0.79566 1.19879 1.20775 1.19160 0.93437 0.92429 0.87546 0.89966 0.90983 0.82017 0.82197 0.84482 0.92108 0.94247 0.92513 0.90944 0.90932 0.92332 0.94639 1.00099 0.98932 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.05 1.01 5.46 71.98 0.39 1.40 16 3 O -0.32 -10.30 9.37 -92.70 -0.87 -11.17 16 4 C 0.14 4.27 6.66 22.50 0.15 4.42 16 5 C -0.20 -4.31 9.04 22.36 0.20 -4.10 16 6 C -0.07 -1.35 9.82 22.28 0.22 -1.13 16 7 C -0.08 -1.89 6.32 22.33 0.14 -1.75 16 8 Cl -0.07 -1.49 28.95 -2.72 -0.08 -1.57 16 9 C -0.07 -1.90 8.44 22.28 0.19 -1.71 16 10 C -0.11 -3.43 4.58 -19.77 -0.09 -3.52 16 11 C 0.10 4.00 4.57 85.56 0.39 4.39 16 12 N -0.53 -23.75 4.69 -905.37 -4.25 -27.99 16 13 C 0.06 2.59 5.63 86.30 0.49 3.07 16 14 C -0.18 -6.53 9.25 71.98 0.67 -5.87 16 15 C 0.21 11.33 4.50 85.56 0.38 11.72 16 16 C -0.51 -29.70 8.41 25.60 0.22 -29.49 16 17 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 18 C 0.00 0.24 5.46 84.65 0.46 0.70 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.33 7.66 -2.39 -0.02 1.31 16 28 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 29 H 0.16 2.52 6.30 -2.91 -0.02 2.50 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.14 3.56 7.75 -2.91 -0.02 3.53 16 32 H 0.06 2.51 7.64 -2.39 -0.02 2.49 16 33 H 0.04 1.46 5.95 -2.39 -0.01 1.44 16 34 H 0.06 2.50 6.97 -2.39 -0.02 2.48 16 35 H 0.07 2.58 6.47 -2.39 -0.02 2.57 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.94 6.03 -2.39 -0.01 1.93 16 38 H 0.03 1.54 6.31 -2.39 -0.02 1.52 16 39 H -0.02 -1.08 6.01 -2.38 -0.01 -1.09 16 40 H -0.01 -0.44 7.92 -2.39 -0.02 -0.46 16 41 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -66.92 344.53 2.69 -64.24 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.55 Total: -24.33 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.96 Total: -84.58 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.87 Total: -11.17 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -66.92 2.69 -64.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139009084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.804 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds