Wall clock time and date at job start Tue Mar 31 2020 07:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00476 * 2 1 4 4 C 1.50699 * 109.47003 * 270.00132 * 3 2 1 5 5 N 1.31793 * 119.11736 * 269.72262 * 4 3 2 6 6 C 1.32340 * 120.81880 * 179.75888 * 5 4 3 7 7 C 1.38602 * 119.10170 * 0.51057 * 6 5 4 8 8 C 1.38598 * 118.39531 * 359.74648 * 7 6 5 9 9 N 1.31794 * 119.12896 * 89.99696 * 4 3 2 10 10 C 1.34775 * 119.99766 * 179.97438 * 2 1 3 11 11 O 1.21546 * 119.99992 * 174.39244 * 10 2 1 12 12 C 1.47893 * 119.99957 * 354.38702 * 10 2 1 13 13 C 1.39914 * 120.02757 * 326.89441 * 12 10 2 14 14 C 1.38329 * 120.36133 * 180.29593 * 13 12 10 15 15 C 1.37754 * 120.41021 * 359.95474 * 14 13 12 16 16 C 1.40750 * 120.04011 * 0.04588 * 15 14 13 17 17 C 1.41433 * 120.18176 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99227 * 330.17518 * 17 16 15 19 19 C 1.39933 * 120.00612 * 150.17595 * 17 16 15 20 20 N 1.30833 * 119.99479 * 344.67377 * 19 17 16 21 21 Si 1.86799 * 120.00042 * 164.67269 * 19 17 16 22 22 H 1.48498 * 109.47007 * 90.00341 * 21 19 17 23 23 H 1.48501 * 109.46982 * 209.99685 * 21 19 17 24 24 H 1.48493 * 109.47012 * 329.99785 * 21 19 17 25 25 C 1.38989 * 120.02048 * 147.16668 * 12 10 2 26 26 H 1.08994 * 109.47355 * 269.59901 * 1 2 3 27 27 H 1.09007 * 109.46608 * 29.59812 * 1 2 3 28 28 H 1.08998 * 109.47046 * 149.59222 * 1 2 3 29 29 H 1.09006 * 109.46895 * 29.99681 * 3 2 1 30 30 H 1.08999 * 109.47431 * 149.99631 * 3 2 1 31 31 H 1.07994 * 120.45028 * 180.23452 * 6 5 4 32 32 H 1.07994 * 120.79902 * 179.76944 * 7 6 5 33 33 H 1.08009 * 120.44064 * 180.02562 * 8 7 6 34 34 H 1.08008 * 119.82021 * 0.25186 * 13 12 10 35 35 H 1.08001 * 119.79559 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.97999 * 180.02562 * 15 14 13 37 37 H 0.97000 * 119.99513 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.20884 * 359.70869 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 7 3.5553 1.3175 -2.0236 6 6 3.8077 1.6760 -3.2723 7 6 2.8950 2.4762 -3.9415 8 6 1.7455 2.8662 -3.2726 9 7 1.5587 2.4645 -2.0257 10 6 2.1388 -1.1672 0.0005 11 8 3.3499 -1.1698 -0.1023 12 6 1.4046 -2.4448 0.1264 13 6 0.2365 -2.5084 0.8938 14 6 -0.4524 -3.7012 1.0212 15 6 0.0029 -4.8398 0.3935 16 6 1.1762 -4.7953 -0.3827 17 6 1.6460 -5.9624 -1.0288 18 1 1.4523 -6.9334 -0.5975 19 6 2.3619 -5.8590 -2.2267 20 7 2.3440 -4.7403 -2.9049 21 14 3.3427 -7.3182 -2.8575 22 1 2.4812 -8.1523 -3.7335 23 1 4.5120 -6.8309 -3.6326 24 1 3.8148 -8.1313 -1.7082 25 6 1.8777 -3.5846 -0.5130 26 1 -0.3634 -0.0072 1.0276 27 1 -0.3633 0.8936 -0.5076 28 1 -0.3633 -0.8863 -0.5201 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1383 0.5139 31 1 4.7146 1.3531 -3.7618 32 1 3.0751 2.7879 -4.9597 33 1 1.0120 3.4893 -3.7626 34 1 -0.1291 -1.6215 1.3900 35 1 -1.3529 -3.7400 1.6161 36 1 -0.5406 -5.7673 0.4974 37 1 2.8399 -4.6688 -3.7355 38 1 2.7788 -3.5402 -1.1067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188658676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:00 Heat of formation + Delta-G solvation = 47.715667 kcal Electronic energy + Delta-G solvation = -23157.123946 eV Core-core repulsion = 19772.038138 eV Total energy + Delta-G solvation = -3385.085808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01207 -39.34539 -37.04490 -35.25329 -33.70998 -33.65611 -32.46221 -30.24330 -29.47002 -27.89599 -26.03842 -25.24232 -24.49772 -23.19079 -21.52120 -20.95965 -18.92395 -17.65849 -17.30397 -17.06689 -16.02102 -15.72937 -15.55231 -15.14737 -14.90876 -14.59941 -14.33489 -13.60046 -13.50652 -13.30479 -12.93603 -12.67143 -12.45350 -12.38615 -12.12421 -11.75248 -11.51302 -11.17295 -11.07060 -10.89827 -10.78330 -10.54502 -10.48286 -10.04693 -9.68832 -9.63652 -9.20535 -9.16687 -8.92640 -8.36678 -7.59282 -7.44840 -6.77439 -4.40450 0.84104 1.12448 2.29314 2.82274 3.08942 3.11835 3.16828 3.30042 3.72763 3.94335 3.97957 4.04178 4.17233 4.56807 4.63317 4.94596 5.07199 5.18172 5.31636 5.51642 5.55283 5.60325 5.66760 5.79877 5.93381 6.13923 6.16648 6.36601 6.36984 6.69247 6.84680 7.00033 7.01688 7.04734 7.21231 7.39664 7.66388 7.77862 7.86970 8.00126 8.15976 8.18253 8.51032 8.82810 8.84043 8.89969 10.19654 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.004816 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.890252 B = 5812.140882 C = 7114.853537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.615 5.615 3 C 0.187 3.813 4 C 0.304 3.696 5 N -0.486 5.486 6 C 0.147 3.853 7 C -0.233 4.233 8 C 0.142 3.858 9 N -0.513 5.513 10 C 0.565 3.435 11 O -0.525 6.525 12 C -0.125 4.125 13 C -0.217 4.217 14 C -0.102 4.102 15 C -0.207 4.207 16 C 0.103 3.897 17 C -0.466 4.466 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.282 0.718 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 13.409 -1.411 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.350 5.350 3 C 0.062 3.938 4 C 0.035 3.965 5 N -0.200 5.200 6 C -0.019 4.019 7 C -0.256 4.256 8 C -0.025 4.025 9 N -0.228 5.228 10 C 0.356 3.644 11 O -0.401 6.401 12 C -0.128 4.128 13 C -0.237 4.237 14 C -0.120 4.120 15 C -0.227 4.227 16 C 0.100 3.900 17 C -0.495 4.495 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.421 5.421 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.110 4.110 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.183 0.817 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.327 13.209 -0.730 13.296 hybrid contribution 0.444 -0.277 -1.635 1.716 sum -0.884 12.932 -2.365 13.176 Atomic orbital electron populations 1.22106 0.79070 1.03412 1.01441 1.47706 1.07107 1.04520 1.75680 1.19996 0.99564 0.86417 0.87870 1.23834 0.85509 0.88966 0.98192 1.68427 1.20986 1.20180 1.10387 1.23339 0.98284 0.90250 0.90025 1.22913 0.97505 1.02187 1.02945 1.23181 0.95064 0.94214 0.89993 1.68248 1.31288 1.12525 1.10722 1.19046 0.87142 0.83665 0.74506 1.90733 1.14065 1.87016 1.48274 1.19411 0.97371 0.92316 1.03683 1.20777 0.98214 0.97772 1.06903 1.20476 0.98546 0.93320 0.99682 1.21168 0.98136 0.97115 1.06240 1.17562 0.89557 0.92759 0.90080 1.19529 1.30597 0.94024 1.05381 0.90156 1.25898 0.94843 0.97161 0.96350 1.69782 1.33032 1.26575 1.12725 0.86295 0.79547 0.81411 0.79402 1.19523 1.20070 1.18382 1.21445 0.99487 0.91052 0.99053 0.92438 0.91807 0.89658 0.88279 0.87600 0.81635 0.83701 0.81692 0.87796 0.88826 0.88609 0.90764 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.81 59.85 0.53 1.77 16 2 N -0.62 -11.06 2.86 -184.06 -0.53 -11.59 16 3 C 0.19 2.92 5.80 -5.20 -0.03 2.89 16 4 C 0.30 4.96 7.22 -157.20 -1.14 3.82 16 5 N -0.49 -8.43 10.33 -10.72 -0.11 -8.54 16 6 C 0.15 1.98 11.31 -17.20 -0.19 1.78 16 7 C -0.23 -2.48 10.17 -39.31 -0.40 -2.88 16 8 C 0.14 1.60 11.30 -17.21 -0.19 1.41 16 9 N -0.51 -7.36 10.33 -10.73 -0.11 -7.47 16 10 C 0.56 12.78 7.38 -12.31 -0.09 12.69 16 11 O -0.53 -13.35 16.40 5.32 0.09 -13.26 16 12 C -0.12 -2.98 5.22 -105.04 -0.55 -3.53 16 13 C -0.22 -4.57 7.69 -38.92 -0.30 -4.87 16 14 C -0.10 -2.17 10.01 -39.72 -0.40 -2.56 16 15 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 16 C 0.10 2.74 5.51 -106.87 -0.59 2.15 16 17 C -0.47 -12.41 9.04 -37.73 -0.34 -12.75 16 18 H 0.08 2.03 7.89 -52.48 -0.41 1.62 16 19 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 20 N -0.80 -21.32 11.17 55.55 0.62 -20.69 16 21 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.09 -2.44 8.20 -38.44 -0.32 -2.75 16 26 H 0.06 0.75 6.66 -51.93 -0.35 0.40 16 27 H 0.06 0.84 8.07 -51.92 -0.42 0.42 16 28 H 0.08 1.47 6.07 -51.93 -0.32 1.15 16 29 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.11 1.73 7.50 -51.93 -0.39 1.34 16 31 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.10 1.86 5.11 -52.48 -0.27 1.59 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.12 3.62 6.38 -52.49 -0.33 3.29 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -32.64 328.95 -8.74 -41.38 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.15 Total: 7.43 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -4.48 Total: -6.31 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.13 Total: -48.29 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.64 -8.74 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188658676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.098 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds