Wall clock time and date at job start Tue Mar 31 2020 08:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00385 * 2 1 4 4 C 1.52992 * 109.47404 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47124 * 179.97438 * 4 3 2 6 6 N 1.46908 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99675 * 66.04815 * 6 5 4 8 8 C 1.50701 * 109.46584 * 193.95345 * 7 6 5 9 9 H 1.07998 * 120.00587 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99617 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99937 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99894 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47437 * 89.99494 * 12 10 8 14 14 H 1.48496 * 109.47020 * 210.00058 * 12 10 8 15 15 H 1.48504 * 109.47276 * 329.99825 * 12 10 8 16 16 C 1.46903 * 110.99803 * 190.00187 * 6 5 4 17 17 C 1.50699 * 109.46834 * 170.00049 * 16 6 5 18 18 C 1.38238 * 119.98782 * 270.25397 * 17 16 6 19 19 C 1.38212 * 120.01544 * 180.21353 * 18 17 16 20 20 C 1.38361 * 119.98341 * 359.50741 * 19 18 17 21 21 Cl 1.73597 * 120.00859 * 180.27890 * 20 19 18 22 22 C 1.38346 * 119.97306 * 0.25744 * 20 19 18 23 23 C 1.38210 * 119.98768 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46967 * 60.00216 * 1 2 3 25 25 H 1.09002 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47631 * 300.00456 * 1 2 3 27 27 H 1.09003 * 109.46881 * 59.99780 * 3 2 1 28 28 H 1.09009 * 109.47012 * 300.00255 * 3 2 1 29 29 H 1.09003 * 109.47094 * 60.00139 * 4 3 2 30 30 H 1.08996 * 109.47494 * 299.99920 * 4 3 2 31 31 H 1.08997 * 109.47201 * 60.00494 * 5 4 3 32 32 H 1.08999 * 109.47630 * 300.00034 * 5 4 3 33 33 H 1.08998 * 109.47381 * 313.95083 * 7 6 5 34 34 H 1.08996 * 109.47198 * 73.95724 * 7 6 5 35 35 H 0.97002 * 119.99976 * 180.02562 * 11 10 8 36 36 H 1.08992 * 109.47144 * 50.00147 * 16 6 5 37 37 H 1.08996 * 109.46948 * 289.99652 * 16 6 5 38 38 H 1.08004 * 119.99455 * 359.97438 * 18 17 16 39 39 H 1.08002 * 120.01126 * 179.79322 * 19 18 17 40 40 H 1.08002 * 120.00348 * 180.02562 * 22 20 19 41 41 H 1.08002 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5823 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1029 1.8691 -1.2531 8 6 7.5418 1.4514 -1.0908 9 1 8.0483 1.6129 -0.1508 10 6 8.2116 0.8630 -2.1426 11 7 7.5946 0.6658 -3.2872 12 14 9.9948 0.3445 -1.9413 13 1 10.0508 -1.0548 -1.4472 14 1 10.6875 0.4348 -3.2517 15 1 10.6639 1.2413 -0.9649 16 6 6.2536 3.7712 0.2376 17 6 7.7294 3.5794 0.4749 18 6 8.2016 3.3710 1.7574 19 6 9.5555 3.1993 1.9762 20 6 10.4371 3.2259 0.9102 21 17 12.1369 3.0032 1.1835 22 6 9.9634 3.4297 -0.3736 23 6 8.6099 3.6070 -0.5904 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 3.8359 3.1237 0.8895 32 1 3.8365 3.1227 -0.8904 33 1 5.4965 0.9966 -1.4960 34 1 6.0255 2.6007 -2.0574 35 1 8.0657 0.2515 -4.0270 36 1 5.8027 4.2391 1.1126 37 1 6.1058 4.4103 -0.6329 38 1 7.5129 3.3462 2.5889 39 1 9.9247 3.0399 2.9786 40 1 10.6510 3.4501 -1.2061 41 1 8.2401 3.7665 -1.5925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209054215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:28 Heat of formation + Delta-G solvation = -18.435075 kcal Electronic energy + Delta-G solvation = -22119.588423 eV Core-core repulsion = 18832.741597 eV Total energy + Delta-G solvation = -3286.846825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.14025 -37.92945 -36.74129 -35.77701 -32.94609 -32.24961 -30.34762 -30.06056 -27.57292 -26.79269 -25.07104 -23.41085 -22.19180 -22.07126 -20.50093 -19.75761 -16.76073 -16.42747 -16.23499 -15.97761 -15.26947 -15.04907 -14.79584 -14.42524 -14.03035 -13.97598 -13.37769 -13.07227 -12.81684 -12.77092 -12.39189 -11.98303 -11.92121 -11.70103 -11.39696 -11.24003 -11.09737 -10.88823 -10.77484 -10.62193 -10.57440 -10.43512 -10.19387 -10.10075 -9.62068 -9.55305 -9.26281 -8.51688 -8.09062 -7.56473 -7.37400 -6.10812 -4.00568 1.89300 2.13017 2.71453 3.32975 3.41688 3.51164 3.80635 4.31595 4.45607 5.01152 5.18622 5.24134 5.29091 5.33444 5.39768 5.47241 5.57614 5.59291 5.60495 5.64947 5.68868 5.80665 5.95632 6.02301 6.05314 6.20100 6.28684 6.46595 6.54388 6.67627 6.71746 6.92698 7.02372 7.16215 7.20799 7.29345 7.39081 7.59090 7.78011 8.02105 8.08209 8.45180 8.99399 9.53073 10.98208 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.004367 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.600098 B = 6410.351983 C = 7415.307350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.115 4.115 5 C 0.063 3.937 6 N -0.533 5.533 7 C 0.184 3.816 8 C -0.494 4.494 9 H 0.083 0.917 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.866 3.134 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.240 1.240 16 C 0.107 3.893 17 C -0.061 4.061 18 C -0.096 4.096 19 C -0.145 4.145 20 C -0.025 4.025 21 Cl -0.102 7.102 22 C -0.138 4.138 23 C -0.009 4.009 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.037 0.963 34 H -0.009 1.009 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 6.340 7.283 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.257 5.257 7 C 0.059 3.941 8 C -0.531 4.531 9 H 0.101 0.899 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.693 3.307 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.163 1.163 16 C -0.021 4.021 17 C -0.061 4.061 18 C -0.115 4.115 19 C -0.164 4.164 20 C -0.051 4.051 21 Cl -0.074 7.074 22 C -0.158 4.158 23 C -0.029 4.029 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.111 5.767 7.492 10.748 hybrid contribution 0.637 0.003 -0.860 1.070 sum -4.475 5.770 6.632 9.864 Atomic orbital electron populations 1.22700 0.81677 1.02435 0.99636 1.87917 1.19138 1.28505 1.95337 1.22545 0.95017 0.84147 0.99507 1.21508 0.90972 0.98142 1.04682 1.21840 0.89863 0.95552 0.99295 1.62172 1.02685 1.20956 1.39899 1.19920 0.96304 0.94324 0.83557 1.21673 0.95707 1.36734 0.98942 0.89880 1.24941 0.98442 0.95614 0.95237 1.69969 1.36970 1.42979 1.02997 0.86980 0.85456 0.80015 0.78206 1.20988 1.21644 1.16331 1.20814 0.91151 0.90882 0.99239 1.19491 0.94830 0.98945 0.92866 1.20662 0.93907 1.00301 0.96633 1.20632 0.92975 1.05499 0.97335 1.20722 0.83150 1.05916 0.95348 1.98304 1.16353 1.95902 1.96816 1.20678 0.96222 1.04292 0.94568 1.20737 0.91078 0.92349 0.98698 0.94320 0.89897 0.94385 0.93739 0.93687 0.90201 0.90536 0.92091 0.95833 0.94531 0.99083 0.92888 0.91761 0.94985 0.86374 0.86491 0.86517 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.81 10.70 -35.23 -0.38 -6.19 16 3 C 0.06 0.89 5.94 37.15 0.22 1.11 16 4 C -0.12 -1.90 5.54 -26.74 -0.15 -2.05 16 5 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 6 N -0.53 -10.43 4.56 -237.52 -1.08 -11.51 16 7 C 0.18 4.37 4.53 -4.97 -0.02 4.35 16 8 C -0.49 -12.51 5.37 -34.44 -0.19 -12.69 16 9 H 0.08 2.12 4.71 -52.49 -0.25 1.87 16 10 C 0.06 1.60 5.44 -17.82 -0.10 1.51 16 11 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 12 Si 0.87 20.75 28.39 -169.99 -4.83 15.92 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.24 -5.41 4.93 56.52 0.28 -5.14 16 16 C 0.11 1.86 5.11 -4.97 -0.03 1.83 16 17 C -0.06 -1.12 3.46 -104.62 -0.36 -1.48 16 18 C -0.10 -1.64 9.49 -39.59 -0.38 -2.02 16 19 C -0.15 -2.49 9.83 -39.55 -0.39 -2.88 16 20 C -0.02 -0.46 6.12 -39.50 -0.24 -0.70 16 21 Cl -0.10 -1.72 28.96 -51.86 -1.50 -3.22 16 22 C -0.14 -2.66 6.81 -39.55 -0.27 -2.93 16 23 C -0.01 -0.19 5.88 -39.59 -0.23 -0.42 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.08 1.54 6.31 -51.93 -0.33 1.21 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 32 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.04 0.95 5.98 -51.93 -0.31 0.64 16 34 H -0.01 -0.22 7.99 -51.93 -0.41 -0.63 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 37 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 38 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.12 2.19 7.90 -52.49 -0.41 1.78 16 41 H 0.13 2.63 7.68 -52.49 -0.40 2.23 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -28.27 340.27 -9.37 -37.64 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.41 Total: 0.59 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.03 Total: -13.90 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.35 Total: -35.97 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.38 Total: -6.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.83 Total: 15.92 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.50 Total: -3.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.27 -9.37 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209054215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.204 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds