Wall clock time and date at job start Tue Mar 31 2020 08:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00385 * 2 1 4 4 C 1.52992 * 109.47404 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47124 * 179.97438 * 4 3 2 6 6 N 1.46908 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99675 * 66.04815 * 6 5 4 8 8 C 1.50701 * 109.46584 * 193.95345 * 7 6 5 9 9 H 1.07998 * 120.00587 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99617 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99937 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99894 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47437 * 89.99494 * 12 10 8 14 14 H 1.48496 * 109.47020 * 210.00058 * 12 10 8 15 15 H 1.48504 * 109.47276 * 329.99825 * 12 10 8 16 16 C 1.46903 * 110.99803 * 190.00187 * 6 5 4 17 17 C 1.50699 * 109.46834 * 170.00049 * 16 6 5 18 18 C 1.38238 * 119.98782 * 270.25397 * 17 16 6 19 19 C 1.38212 * 120.01544 * 180.21353 * 18 17 16 20 20 C 1.38361 * 119.98341 * 359.50741 * 19 18 17 21 21 Cl 1.73597 * 120.00859 * 180.27890 * 20 19 18 22 22 C 1.38346 * 119.97306 * 0.25744 * 20 19 18 23 23 C 1.38210 * 119.98768 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46967 * 60.00216 * 1 2 3 25 25 H 1.09002 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47631 * 300.00456 * 1 2 3 27 27 H 1.09003 * 109.46881 * 59.99780 * 3 2 1 28 28 H 1.09009 * 109.47012 * 300.00255 * 3 2 1 29 29 H 1.09003 * 109.47094 * 60.00139 * 4 3 2 30 30 H 1.08996 * 109.47494 * 299.99920 * 4 3 2 31 31 H 1.08997 * 109.47201 * 60.00494 * 5 4 3 32 32 H 1.08999 * 109.47630 * 300.00034 * 5 4 3 33 33 H 1.08998 * 109.47381 * 313.95083 * 7 6 5 34 34 H 1.08996 * 109.47198 * 73.95724 * 7 6 5 35 35 H 0.97002 * 119.99976 * 180.02562 * 11 10 8 36 36 H 1.08992 * 109.47144 * 50.00147 * 16 6 5 37 37 H 1.08996 * 109.46948 * 289.99652 * 16 6 5 38 38 H 1.08004 * 119.99455 * 359.97438 * 18 17 16 39 39 H 1.08002 * 120.01126 * 179.79322 * 19 18 17 40 40 H 1.08002 * 120.00348 * 180.02562 * 22 20 19 41 41 H 1.08002 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5823 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1029 1.8691 -1.2531 8 6 7.5418 1.4514 -1.0908 9 1 8.0483 1.6129 -0.1508 10 6 8.2116 0.8630 -2.1426 11 7 7.5946 0.6658 -3.2872 12 14 9.9948 0.3445 -1.9413 13 1 10.0508 -1.0548 -1.4472 14 1 10.6875 0.4348 -3.2517 15 1 10.6639 1.2413 -0.9649 16 6 6.2536 3.7712 0.2376 17 6 7.7294 3.5794 0.4749 18 6 8.2016 3.3710 1.7574 19 6 9.5555 3.1993 1.9762 20 6 10.4371 3.2259 0.9102 21 17 12.1369 3.0032 1.1835 22 6 9.9634 3.4297 -0.3736 23 6 8.6099 3.6070 -0.5904 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 3.8359 3.1237 0.8895 32 1 3.8365 3.1227 -0.8904 33 1 5.4965 0.9966 -1.4960 34 1 6.0255 2.6007 -2.0574 35 1 8.0657 0.2515 -4.0270 36 1 5.8027 4.2391 1.1126 37 1 6.1058 4.4103 -0.6329 38 1 7.5129 3.3462 2.5889 39 1 9.9247 3.0399 2.9786 40 1 10.6510 3.4501 -1.2061 41 1 8.2401 3.7665 -1.5925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209054215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:28 Heat of formation + Delta-G solvation = -35.124050 kcal Electronic energy + Delta-G solvation = -22120.312111 eV Core-core repulsion = 18832.741597 eV Total energy + Delta-G solvation = -3287.570514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60797 -39.04973 -38.14577 -37.16003 -34.79485 -33.68042 -31.82055 -31.46104 -29.36945 -27.82677 -26.30408 -25.10677 -23.63468 -23.50589 -21.86108 -21.28921 -18.64005 -17.85308 -17.35976 -17.11231 -16.72710 -16.52938 -16.14583 -16.04453 -15.44254 -15.25784 -14.85545 -14.52262 -14.28756 -14.20622 -14.01722 -13.70495 -13.15252 -12.97904 -12.90393 -12.66400 -12.59055 -12.45550 -12.31730 -12.10603 -11.91102 -11.89359 -11.64077 -11.56139 -11.28576 -11.12626 -10.59192 -10.51928 -9.56106 -9.09684 -8.96525 -8.14987 -6.08446 0.44750 0.69390 1.31557 1.38296 1.45195 1.56873 2.43555 2.73082 2.97202 3.25555 3.59826 4.02590 4.04956 4.15532 4.20838 4.24404 4.38381 4.48188 4.50979 4.55443 4.59907 4.65247 4.66981 4.76863 4.80316 4.86503 4.88303 5.05175 5.13681 5.27838 5.30967 5.33951 5.35556 5.52297 5.58837 5.77219 5.93798 6.13538 6.18420 6.30013 6.40218 6.68638 6.98263 7.49636 8.95299 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.004367 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.600098 B = 6410.351983 C = 7415.307350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.071 3.929 4 C -0.110 4.110 5 C 0.065 3.935 6 N -0.539 5.539 7 C 0.201 3.799 8 C -0.482 4.482 9 H 0.086 0.914 10 C 0.016 3.984 11 N -0.933 5.933 12 Si 0.911 3.089 13 H -0.295 1.295 14 H -0.297 1.297 15 H -0.220 1.220 16 C 0.105 3.895 17 C -0.069 4.069 18 C -0.092 4.092 19 C -0.136 4.136 20 C -0.040 4.040 21 Cl -0.089 7.089 22 C -0.146 4.146 23 C -0.027 4.027 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.023 0.977 33 H 0.007 0.993 34 H -0.036 1.036 35 H 0.257 0.743 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.113 0.887 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 7.464 10.278 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.006 4.006 4 C -0.148 4.148 5 C -0.063 4.063 6 N -0.263 5.263 7 C 0.074 3.926 8 C -0.520 4.520 9 H 0.104 0.896 10 C -0.182 4.182 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.222 1.222 14 H -0.223 1.223 15 H -0.142 1.142 16 C -0.022 4.022 17 C -0.070 4.070 18 C -0.110 4.110 19 C -0.155 4.155 20 C -0.066 4.066 21 Cl -0.061 7.061 22 C -0.165 4.165 23 C -0.046 4.046 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.025 0.975 34 H -0.018 1.018 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.046 0.954 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.131 0.869 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.609 6.917 10.520 13.783 hybrid contribution 0.780 -0.265 -1.670 1.862 sum -4.829 6.652 8.850 12.078 Atomic orbital electron populations 1.22927 0.79405 1.03713 1.00984 1.87865 1.21705 1.29218 1.95624 1.22471 0.92749 0.84226 1.01144 1.21407 0.93484 0.97770 1.02096 1.21938 0.87664 0.95707 1.01026 1.62087 1.04896 1.22410 1.36914 1.19537 0.95368 0.92780 0.84880 1.21848 0.96309 1.35327 0.98467 0.89601 1.25510 1.01181 0.96336 0.95203 1.70077 1.38184 1.45362 1.03843 0.86293 0.82639 0.79162 0.78146 1.22185 1.22315 1.14204 1.20942 0.90771 0.89765 1.00693 1.19700 0.95245 0.98837 0.93227 1.21011 0.94513 0.98784 0.96739 1.21019 0.92831 1.03372 0.98234 1.20885 0.84246 1.06180 0.95297 1.98307 1.15232 1.95823 1.96699 1.20743 0.96067 1.04412 0.95259 1.20652 0.91784 0.93839 0.98287 0.93410 0.88822 0.92503 0.90922 0.93011 0.94280 0.91551 0.88263 0.95830 0.97484 1.01845 0.93393 0.87881 0.95449 0.83388 0.83759 0.86854 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.73 16 2 O -0.42 -12.22 10.70 -148.98 -1.59 -13.82 16 3 C 0.07 1.83 5.94 71.98 0.43 2.26 16 4 C -0.11 -3.59 5.54 30.59 0.17 -3.42 16 5 C 0.06 1.99 4.96 86.30 0.43 2.42 16 6 N -0.54 -20.57 4.56 -905.36 -4.13 -24.70 16 7 C 0.20 9.85 4.53 85.56 0.39 10.23 16 8 C -0.48 -24.86 5.37 25.60 0.14 -24.72 16 9 H 0.09 4.33 4.71 -2.91 -0.01 4.32 16 10 C 0.02 0.86 5.44 84.66 0.46 1.32 16 11 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 12 Si 0.91 43.45 28.39 68.60 1.95 45.40 16 13 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.22 -9.58 4.93 99.48 0.49 -9.09 16 16 C 0.11 3.45 5.11 85.56 0.44 3.88 16 17 C -0.07 -2.43 3.46 -19.86 -0.07 -2.49 16 18 C -0.09 -2.80 9.49 22.26 0.21 -2.59 16 19 C -0.14 -4.15 9.83 22.29 0.22 -3.93 16 20 C -0.04 -1.35 6.12 22.32 0.14 -1.22 16 21 Cl -0.09 -2.78 28.96 -2.72 -0.08 -2.86 16 22 C -0.15 -5.46 6.81 22.29 0.15 -5.31 16 23 C -0.03 -1.03 5.88 22.26 0.13 -0.90 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.04 1.58 6.31 -2.39 -0.02 1.57 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.35 7.93 -2.39 -0.02 2.33 16 32 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.01 0.39 5.98 -2.39 -0.01 0.38 16 34 H -0.04 -1.94 7.99 -2.39 -0.02 -1.96 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.10 2.59 7.88 -2.39 -0.02 2.57 16 37 H 0.03 0.93 7.96 -2.39 -0.02 0.91 16 38 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.11 4.23 7.90 -2.91 -0.02 4.21 16 41 H 0.10 4.49 7.68 -2.91 -0.02 4.47 16 Total: -1.00 -63.10 340.27 1.69 -61.40 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.79 Total: 12.24 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.48 Total: -22.74 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.85 Total: -79.62 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.59 Total: -13.82 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.95 Total: 45.40 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.08 Total: -2.86 kcal Total: -63.10 1.69 -61.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209054215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.278 kcal (2) G-P(sol) polarization free energy of solvation -63.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds