Wall clock time and date at job start Tue Mar 31 2020 07:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46991 * 2 1 4 4 C 1.35499 * 116.99929 * 179.97438 * 3 2 1 5 5 N 1.32265 * 119.14249 * 359.97438 * 4 3 2 6 6 C 1.32512 * 120.91990 * 180.02562 * 5 4 3 7 7 C 1.38357 * 119.21741 * 0.02562 * 6 5 4 8 8 F 1.35102 * 120.78601 * 179.97438 * 7 6 5 9 9 C 1.39546 * 118.43090 * 0.02562 * 7 6 5 10 10 O 1.35572 * 120.48832 * 179.97438 * 9 7 6 11 11 C 1.42895 * 117.00383 * 179.97438 * 10 9 7 12 12 C 1.53514 * 114.17121 * 210.00206 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.32774 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 N 1.32279 * 119.14190 * 180.27575 * 4 3 2 25 25 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47463 * 300.00233 * 1 2 3 27 27 H 1.09000 * 109.46966 * 60.00707 * 1 2 3 28 28 H 1.09000 * 109.47782 * 239.99795 * 2 1 3 29 29 H 1.09000 * 109.47436 * 119.99542 * 2 1 3 30 30 H 1.07999 * 120.39001 * 179.97438 * 6 5 4 31 31 H 1.09011 * 113.25486 * 342.95289 * 11 10 9 32 32 H 1.09000 * 113.47331 * 105.56452 * 12 11 10 33 33 H 1.08997 * 113.47627 * 335.09577 * 12 11 10 34 34 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 35 35 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 38 38 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5249 0.0005 5 7 4.1395 0.4640 0.0015 6 6 5.4580 0.5968 0.0026 7 6 6.0089 1.8660 0.0032 8 9 7.3489 2.0381 0.0048 9 6 5.1478 2.9641 0.0032 10 8 5.6426 4.2262 0.0043 11 6 4.6941 5.2950 0.0036 12 6 5.1849 6.5705 -0.6956 13 7 4.5449 7.3446 0.3844 14 6 5.3975 8.4641 0.8060 15 6 4.6193 9.3695 1.7256 16 1 3.5938 9.1369 1.9719 17 6 5.2162 10.4956 2.2517 18 7 6.4648 10.7792 1.9514 19 14 4.2514 11.6183 3.3910 20 1 3.5612 12.6614 2.5904 21 1 3.2453 10.8204 4.1369 22 1 5.1807 12.2657 4.3516 23 6 4.7372 6.1744 1.2612 24 7 3.8368 2.7547 0.0061 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 6.0949 -0.2753 0.0038 31 1 3.6926 4.9815 -0.2913 32 1 4.7307 6.7318 -1.6733 33 1 6.2705 6.6656 -0.7135 34 1 5.7190 9.0262 -0.0709 35 1 6.2714 8.0778 1.3304 36 1 6.8846 11.5716 2.3213 37 1 5.7035 6.1639 1.7654 38 1 3.9038 6.0001 1.9418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228365103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:52 Heat of formation + Delta-G solvation = -43.635663 kcal Electronic energy + Delta-G solvation = -23312.728734 eV Core-core repulsion = 19492.912410 eV Total energy + Delta-G solvation = -3819.816324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.98290 -42.61107 -41.41568 -39.81266 -38.58992 -35.10411 -34.69097 -32.86187 -31.60801 -30.92645 -27.59518 -27.03877 -25.95501 -25.38618 -23.88347 -23.32169 -21.32085 -20.60087 -19.65315 -18.88685 -18.61200 -18.24809 -18.10108 -17.10020 -17.00509 -16.44292 -16.29329 -16.11689 -15.85963 -15.27897 -14.97212 -14.72392 -14.54742 -14.30100 -13.99917 -13.81724 -13.51710 -13.36057 -13.27774 -12.97502 -12.83346 -12.55493 -12.51649 -12.26051 -12.13265 -11.84920 -11.73454 -11.31109 -11.07125 -10.66028 -10.61163 -9.87350 -9.79109 -8.26326 -6.37072 -0.40226 -0.29565 1.11025 1.39155 1.41024 1.52014 1.55553 2.31755 2.37589 2.65446 2.80614 3.05619 3.14987 3.21773 3.26296 3.57012 3.86904 3.93618 4.08963 4.13312 4.22893 4.34077 4.43867 4.50356 4.55695 4.68561 4.74242 4.78095 4.93157 4.95489 5.01252 5.22834 5.32498 5.48838 5.66859 5.73495 5.95709 5.97402 6.30521 6.69434 6.76250 7.32471 8.85167 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003135 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.961642 B = 8929.982812 C =10030.036302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.301 6.301 4 C 0.527 3.473 5 N -0.560 5.560 6 C 0.213 3.787 7 C -0.070 4.070 8 F -0.118 7.118 9 C 0.368 3.632 10 O -0.284 6.284 11 C 0.072 3.928 12 C 0.001 3.999 13 N -0.472 5.472 14 C 0.176 3.824 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.973 3.027 20 H -0.271 1.271 21 H -0.266 1.266 22 H -0.279 1.279 23 C -0.002 4.002 24 N -0.581 5.581 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.240 0.760 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.009 0.991 35 H -0.017 1.017 36 H 0.267 0.733 37 H 0.063 0.937 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -26.987 -5.088 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.202 6.202 4 C 0.226 3.774 5 N -0.294 5.294 6 C 0.049 3.951 7 C -0.095 4.095 8 F -0.097 7.097 9 C 0.180 3.820 10 O -0.187 6.187 11 C 0.016 3.984 12 C -0.128 4.128 13 N -0.196 5.196 14 C 0.049 3.951 15 C -0.568 4.568 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.190 1.190 22 H -0.205 1.205 23 C -0.131 4.131 24 N -0.324 5.324 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.256 0.744 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.001 0.999 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.571 -26.343 -5.137 27.887 hybrid contribution 1.793 1.032 0.705 2.186 sum -5.778 -25.311 -4.432 26.338 Atomic orbital electron populations 1.21887 0.90841 1.04707 1.03330 1.23137 0.96245 0.77857 1.03849 1.86139 1.13728 1.34216 1.86116 1.20349 0.86370 0.83621 0.87092 1.68336 1.05526 1.31734 1.23806 1.23696 0.89903 0.95470 0.86003 1.18463 0.78899 0.93610 1.18557 1.91547 1.27403 1.95937 1.94845 1.20168 0.87114 0.86648 0.88095 1.86453 1.35931 1.11296 1.84986 1.24347 0.94013 0.82302 0.97769 1.24180 0.99622 0.90211 0.98822 1.68948 1.42870 1.02709 1.05115 1.19969 0.90800 0.89545 0.94787 1.21400 0.99093 1.08238 1.28058 0.92133 1.25953 0.96007 0.99321 0.98354 1.70075 1.13513 1.27702 1.46040 0.85324 0.78256 0.78438 0.78258 1.19599 1.18988 1.20450 1.24238 1.01754 0.90526 0.96566 1.66978 1.12963 1.25598 1.26828 0.87195 0.91916 0.91749 0.90053 0.90260 0.74433 0.84469 0.87343 0.91215 0.97286 0.99877 0.92462 0.91894 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.06 0.88 6.01 71.98 0.43 1.31 16 3 O -0.30 -6.84 10.20 -88.00 -0.90 -7.74 16 4 C 0.53 12.93 8.49 180.60 1.53 14.46 16 5 N -0.56 -10.68 9.22 -313.56 -2.89 -13.58 16 6 C 0.21 3.30 11.28 84.62 0.95 4.25 16 7 C -0.07 -1.57 7.39 22.61 0.17 -1.40 16 8 F -0.12 -2.83 17.19 44.97 0.77 -2.05 16 9 C 0.37 10.51 7.54 84.87 0.64 11.15 16 10 O -0.28 -9.29 10.09 -88.79 -0.90 -10.18 16 11 C 0.07 2.46 4.54 30.94 0.14 2.60 16 12 C 0.00 0.02 7.52 83.58 0.63 0.65 16 13 N -0.47 -21.46 6.32 -932.85 -5.89 -27.35 16 14 C 0.18 9.64 4.57 85.55 0.39 10.04 16 15 C -0.53 -31.15 9.39 25.60 0.24 -30.91 16 16 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 17 C 0.00 0.11 5.46 84.66 0.46 0.57 16 18 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 19 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.00 -0.06 7.55 83.58 0.63 0.57 16 24 N -0.58 -16.79 8.77 -426.18 -3.74 -20.53 16 25 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 29 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.14 4.53 6.90 -2.38 -0.02 4.52 16 32 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 33 H 0.07 2.64 7.91 -2.39 -0.02 2.62 16 34 H 0.01 0.53 8.08 -2.38 -0.02 0.51 16 35 H -0.02 -0.97 7.30 -2.39 -0.02 -0.98 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.06 2.66 7.42 -2.39 -0.02 2.64 16 38 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.44 334.63 -3.19 -73.63 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.08 Total: 4.74 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.96 Total: 12.54 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -12.24 Total: -118.09 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.79 Total: -17.92 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.77 Total: -2.05 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.44 -3.19 -73.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228365103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.993 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds