Wall clock time and date at job start Tue Mar 31 2020 07:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46898 * 110.99588 * 2 1 4 4 C 1.46893 * 110.99902 * 123.95727 * 2 1 3 5 5 C 1.52998 * 109.47193 * 170.00232 * 4 2 1 6 6 C 1.50693 * 109.47377 * 179.97438 * 5 4 2 7 7 C 1.38269 * 119.94534 * 89.99756 * 6 5 4 8 8 C 1.38146 * 120.05658 * 179.97438 * 7 6 5 9 9 C 1.38734 * 119.94154 * 0.25593 * 8 7 6 10 10 O 1.35905 * 120.05283 * 179.74543 * 9 8 7 11 11 C 1.42893 * 116.99883 * 356.50843 * 10 9 8 12 12 H 1.09001 * 109.47410 * 26.94426 * 11 10 9 13 13 C 1.50709 * 109.46922 * 146.94107 * 11 10 9 14 14 H 1.07997 * 119.99544 * 0.02562 * 13 11 10 15 15 C 1.37872 * 120.00128 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00037 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00028 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47352 * 90.00210 * 17 15 13 19 19 H 1.48504 * 109.47443 * 210.00090 * 17 15 13 20 20 H 1.48504 * 109.47175 * 329.99915 * 17 15 13 21 21 C 1.52998 * 109.47587 * 266.94126 * 11 10 9 22 22 Cl 1.80302 * 109.46785 * 65.00197 * 21 11 10 23 23 C 1.38732 * 119.89185 * 359.46977 * 9 8 7 24 24 C 1.38149 * 119.93784 * 0.54727 * 23 9 8 25 25 H 1.09003 * 109.46772 * 296.04455 * 1 2 3 26 26 H 1.09004 * 109.46967 * 56.04248 * 1 2 3 27 27 H 1.09000 * 109.47063 * 176.04396 * 1 2 3 28 28 H 1.09007 * 109.46917 * 183.95226 * 3 2 1 29 29 H 1.08997 * 109.47894 * 303.95625 * 3 2 1 30 30 H 1.09006 * 109.46919 * 63.96101 * 3 2 1 31 31 H 1.08999 * 109.47283 * 50.00248 * 4 2 1 32 32 H 1.09009 * 109.47286 * 289.99759 * 4 2 1 33 33 H 1.09002 * 109.47214 * 59.99105 * 5 4 2 34 34 H 1.09009 * 109.46618 * 299.99936 * 5 4 2 35 35 H 1.07995 * 119.97349 * 359.95807 * 7 6 5 36 36 H 1.08001 * 120.02789 * 179.97438 * 8 7 6 37 37 H 0.96997 * 120.00018 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47215 * 185.00306 * 21 11 10 39 39 H 1.09005 * 109.46806 * 305.00412 * 21 11 10 40 40 H 1.07997 * 120.03492 * 180.24847 * 23 9 8 41 41 H 1.08010 * 119.96929 * 179.72104 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9703 6 6 4.0446 -1.7406 2.1375 7 6 4.0978 -3.1209 2.0754 8 6 4.5931 -3.8430 3.1438 9 6 5.0323 -3.1825 4.2820 10 8 5.5151 -3.8909 5.3365 11 6 5.4705 -5.3156 5.2358 12 1 5.5029 -5.6069 4.1859 13 6 6.6536 -5.9075 5.9579 14 1 7.3677 -5.2604 6.4453 15 6 6.8236 -7.2752 5.9971 16 7 5.9536 -8.0632 5.4040 17 14 8.2894 -8.0088 6.8928 18 1 7.9271 -8.2627 8.3103 19 1 8.6767 -9.2874 6.2442 20 1 9.4301 -7.0596 6.8358 21 6 4.1766 -5.8315 5.8685 22 17 2.7646 -5.2415 4.9150 23 6 4.9832 -1.7972 4.3397 24 6 4.4868 -1.0797 3.2686 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9234 31 1 1.5091 -1.7407 1.1755 32 1 1.7976 -0.2248 2.0628 33 1 3.9910 0.0194 0.9322 34 1 3.7024 -1.4965 0.0450 35 1 3.7517 -3.6349 1.1909 36 1 4.6340 -4.9212 3.0950 37 1 6.0734 -9.0254 5.4313 38 1 4.1830 -6.9214 5.8716 39 1 4.1019 -5.4656 6.8926 40 1 5.3283 -1.2804 5.2230 41 1 4.4441 -0.0014 3.3148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229658561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:25 Heat of formation + Delta-G solvation = -28.094700 kcal Electronic energy + Delta-G solvation = -21570.751543 eV Core-core repulsion = 18283.485845 eV Total energy + Delta-G solvation = -3287.265698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52289 -37.97932 -36.79355 -34.84113 -33.53452 -32.16225 -30.53505 -29.45228 -27.83902 -27.61794 -25.35136 -24.29751 -22.84162 -21.63756 -20.93519 -19.91260 -17.49539 -16.83300 -15.85659 -15.66807 -15.19839 -15.00837 -14.67781 -14.47499 -14.20564 -13.85219 -13.45895 -13.16931 -12.78486 -12.67927 -12.61575 -12.35429 -12.04152 -11.98308 -11.85969 -11.72092 -11.40778 -11.17009 -11.01431 -10.88725 -10.76670 -10.58422 -10.49264 -10.15782 -9.62116 -9.40250 -9.12582 -8.67929 -8.52811 -8.37179 -7.24447 -6.44693 -4.52166 1.92341 2.01020 3.11806 3.19834 3.23813 3.40095 3.81905 4.04509 4.33182 4.46450 4.91860 4.93102 4.97596 5.12983 5.21915 5.27767 5.36793 5.46506 5.49902 5.54315 5.61490 5.68126 5.76303 5.84654 5.91029 6.06614 6.13918 6.18317 6.29640 6.35128 6.56738 6.69199 6.84589 6.86832 6.94063 7.02452 7.09748 7.18975 7.41135 7.55084 7.76119 8.35435 8.68275 9.15781 10.62460 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.003326 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.054875 B = 8417.335488 C = 8847.642675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.059 3.941 5 C -0.063 4.063 6 C -0.145 4.145 7 C -0.077 4.077 8 C -0.189 4.189 9 C 0.157 3.843 10 O -0.313 6.313 11 C 0.205 3.795 12 H 0.052 0.948 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.036 4.036 22 Cl -0.240 7.240 23 C -0.169 4.169 24 C -0.084 4.084 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.272 0.728 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 12.071 -7.268 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.128 4.128 4 C -0.068 4.068 5 C -0.101 4.101 6 C -0.145 4.145 7 C -0.096 4.096 8 C -0.208 4.208 9 C 0.110 3.890 10 O -0.226 6.226 11 C 0.150 3.850 12 H 0.069 0.931 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.743 3.257 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.098 4.098 22 Cl -0.214 7.214 23 C -0.188 4.188 24 C -0.102 4.102 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.761 11.732 -7.610 15.533 hybrid contribution 0.169 -0.294 1.138 1.187 sum -6.593 11.438 -6.472 14.703 Atomic orbital electron populations 1.22374 0.87498 1.02303 1.00240 1.62016 1.07715 1.13838 1.43791 1.22439 1.01243 0.88895 1.00180 1.22199 0.95748 0.98191 0.90708 1.20393 0.93715 0.99454 0.96507 1.19461 1.05137 0.93726 0.96226 1.20714 0.98087 0.93031 0.97735 1.21492 1.03997 1.01344 0.93931 1.19138 0.91236 0.91496 0.87180 1.86125 1.76029 1.22592 1.37828 1.20522 0.92607 0.73107 0.98770 0.93050 1.21032 1.07494 0.91717 1.35680 0.90588 1.24982 0.97399 0.96516 0.95092 1.69796 1.35554 1.04958 1.42316 0.86176 0.81633 0.78484 0.79433 1.20161 1.20750 1.19388 1.25758 0.83463 1.05155 0.95432 1.98643 1.53233 1.91376 1.78184 1.20320 1.06887 0.91376 1.00222 1.20594 0.98369 0.98616 0.92638 0.95767 0.91553 0.91309 0.90959 0.91693 0.95752 0.90608 0.94703 0.91702 0.90766 0.86748 0.84596 0.91807 0.84912 0.90820 0.86126 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.07 0.57 0.79 16 2 N -0.55 -5.85 5.02 -251.25 -1.26 -7.12 16 3 C 0.02 0.19 9.32 60.06 0.56 0.75 16 4 C 0.06 0.69 4.94 -3.83 -0.02 0.67 16 5 C -0.06 -0.76 5.27 -27.89 -0.15 -0.91 16 6 C -0.14 -2.16 5.13 -104.60 -0.54 -2.70 16 7 C -0.08 -1.29 9.69 -39.60 -0.38 -1.67 16 8 C -0.19 -3.70 7.05 -39.43 -0.28 -3.98 16 9 C 0.16 3.22 5.96 -39.22 -0.23 2.99 16 10 O -0.31 -7.30 9.73 -19.44 -0.19 -7.49 16 11 C 0.20 4.98 2.19 -27.88 -0.06 4.92 16 12 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16 13 C -0.52 -13.58 8.89 -34.44 -0.31 -13.89 16 14 H 0.08 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 16 N -0.89 -23.03 11.29 55.43 0.63 -22.40 16 17 Si 0.92 19.85 29.54 -169.99 -5.02 14.83 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 22 Cl -0.24 -4.97 25.62 -51.86 -1.33 -6.30 16 23 C -0.17 -3.02 9.99 -39.43 -0.39 -3.41 16 24 C -0.08 -1.28 9.69 -39.61 -0.38 -1.67 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.07 0.63 6.47 -51.92 -0.34 0.29 16 29 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.03 0.42 8.12 -51.92 -0.42 0.00 16 33 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 34 H 0.07 0.90 8.09 -51.92 -0.42 0.48 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 2.87 5.12 -52.49 -0.27 2.60 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.13 3.24 5.95 -51.93 -0.31 2.93 16 39 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -26.24 344.46 -9.59 -35.84 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.14 Total: 4.62 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.47 Total: -17.17 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: -0.63 Total: -29.52 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.19 Total: -7.49 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 17 Polarization: -4.97 SS G_CDS: -1.33 Total: -6.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.24 -9.59 -35.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229658561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.743 kcal (2) G-P(sol) polarization free energy of solvation -26.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds