Wall clock time and date at job start Tue Mar 31 2020 07:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47211 * 2 1 4 4 C 1.34225 * 116.99994 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47306 * 174.31733 * 6 4 3 8 8 C 1.46902 * 110.99630 * 287.76873 * 7 6 4 9 9 C 1.50696 * 109.47148 * 294.60896 * 8 7 6 10 10 H 1.07997 * 120.00458 * 5.33816 * 9 8 7 11 11 C 1.37883 * 119.99844 * 185.34430 * 9 8 7 12 12 N 1.31515 * 119.99974 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00020 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47126 * 90.00001 * 13 11 9 15 15 H 1.48498 * 109.46999 * 210.00045 * 13 11 9 16 16 H 1.48502 * 109.47154 * 329.99897 * 13 11 9 17 17 C 1.46891 * 111.00240 * 163.81540 * 7 6 4 18 18 C 1.50704 * 109.47403 * 189.99552 * 17 7 6 19 19 N 1.31789 * 119.09361 * 269.73889 * 18 17 7 20 20 C 1.32316 * 120.84288 * 179.71810 * 19 18 17 21 21 C 1.38818 * 119.07060 * 0.53537 * 20 19 18 22 22 F 1.35105 * 120.82419 * 179.71384 * 21 20 19 23 23 C 1.38817 * 118.35134 * 359.73355 * 21 20 19 24 24 N 1.31783 * 119.08694 * 89.99806 * 18 17 7 25 25 H 1.09009 * 109.47195 * 300.00030 * 1 2 3 26 26 H 1.09001 * 109.47421 * 59.99491 * 1 2 3 27 27 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46865 * 239.99713 * 2 1 3 29 29 H 1.09005 * 109.46783 * 120.00201 * 2 1 3 30 30 H 1.08993 * 109.47419 * 54.31245 * 6 4 3 31 31 H 1.09006 * 109.47206 * 294.31185 * 6 4 3 32 32 H 1.09000 * 109.47046 * 54.60990 * 8 7 6 33 33 H 1.09000 * 109.47339 * 174.60509 * 8 7 6 34 34 H 0.97002 * 120.00258 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.47271 * 69.99741 * 17 7 6 36 36 H 1.08997 * 109.47540 * 310.00224 * 17 7 6 37 37 H 1.08002 * 120.46411 * 180.29854 * 20 19 18 38 38 H 1.08008 * 120.46472 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 7 5.3814 2.8630 0.1388 8 6 5.7623 2.4677 1.5014 9 6 5.3513 3.5460 2.4706 10 1 4.7809 4.3950 2.1239 11 6 5.7036 3.4486 3.8001 12 7 5.3445 4.3894 4.6461 13 14 6.6896 1.9799 4.4000 14 1 8.1399 2.2809 4.2944 15 1 6.3446 1.6972 5.8164 16 1 6.3682 0.7939 3.5660 17 6 6.0109 4.1364 -0.2353 18 6 7.5044 3.9529 -0.3194 19 7 8.2370 4.1590 0.7566 20 6 9.5504 4.0026 0.7232 21 6 10.1549 3.6271 -0.4688 22 9 11.4938 3.4630 -0.5443 23 6 9.3495 3.4249 -1.5812 24 7 8.0423 3.5958 -1.4682 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.5054 3.5020 0.8358 31 1 3.6690 3.4351 -0.9354 32 1 5.2623 1.5349 1.7622 33 1 6.8421 2.3272 1.5506 34 1 5.5926 4.3212 5.5814 35 1 5.7794 4.8909 0.5166 36 1 5.6294 4.4597 -1.2038 37 1 10.1443 4.1684 1.6098 38 1 9.7839 3.1326 -2.5259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235013304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:37 Heat of formation + Delta-G solvation = -85.035251 kcal Electronic energy + Delta-G solvation = -24129.044738 eV Core-core repulsion = 20307.433194 eV Total energy + Delta-G solvation = -3821.611544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.09680 -42.08713 -41.40402 -38.69918 -37.25993 -34.92602 -34.55166 -33.13391 -32.57514 -30.26731 -29.24939 -26.46645 -25.96702 -24.51247 -23.91562 -22.51885 -21.34413 -19.50124 -19.22631 -18.62374 -18.57646 -17.78438 -17.63817 -17.19717 -16.93956 -16.42588 -16.28876 -16.06738 -15.44800 -15.12998 -14.72784 -14.59537 -14.42811 -14.21420 -13.99982 -13.61081 -13.46036 -13.09747 -13.00292 -12.92802 -12.69295 -12.48476 -12.45346 -12.29902 -12.00378 -11.92420 -11.69918 -11.46040 -11.33379 -10.73661 -10.30803 -10.22378 -9.15546 -8.28216 -6.27605 -0.40302 -0.05712 1.26710 1.29555 1.30805 1.39844 1.66233 2.32447 2.49032 2.74862 2.86696 3.08678 3.09550 3.38638 3.65325 3.66185 3.87963 4.03104 4.14156 4.18517 4.31585 4.37786 4.43776 4.61873 4.62644 4.84896 4.86504 4.95541 4.96452 5.06877 5.17778 5.29221 5.43881 5.52268 5.83426 5.93888 6.10248 6.24893 6.72417 6.90684 7.00554 7.37446 8.87057 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.005365 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.756500 B = 5218.104861 C = 6644.099306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.469 3.531 5 O -0.528 6.528 6 C 0.067 3.933 7 N -0.520 5.520 8 C 0.172 3.828 9 C -0.525 4.525 10 H 0.060 0.940 11 C 0.036 3.964 12 N -0.934 5.934 13 Si 0.917 3.083 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.128 3.872 18 C 0.318 3.682 19 N -0.497 5.497 20 C 0.110 3.890 21 C -0.007 4.007 22 F -0.117 7.117 23 C 0.127 3.873 24 N -0.489 5.489 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.011 0.989 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.191 0.809 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -3.189 -13.420 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.312 3.688 5 O -0.416 6.416 6 C -0.061 4.061 7 N -0.244 5.244 8 C 0.045 3.955 9 C -0.564 4.564 10 H 0.078 0.922 11 C -0.164 4.164 12 N -0.575 5.575 13 Si 0.744 3.256 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.001 4.001 18 C 0.051 3.949 19 N -0.210 5.210 20 C -0.057 4.057 21 C -0.032 4.032 22 F -0.095 7.095 23 C -0.041 4.041 24 N -0.203 5.203 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.208 0.792 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.176 -3.697 -13.510 14.008 hybrid contribution 1.606 -0.368 1.584 2.285 sum 1.430 -4.065 -11.927 12.681 Atomic orbital electron populations 1.21808 0.89966 1.04371 1.03785 1.23260 0.97344 0.79466 1.02087 1.86485 1.23838 1.33584 1.84110 1.23911 0.80493 0.93018 0.71342 1.90609 1.61080 1.44025 1.45914 1.21565 0.88432 0.90036 1.06100 1.61970 1.06676 1.29237 1.26560 1.19913 0.95538 0.94916 0.85156 1.21597 1.34443 1.07122 0.93204 0.92247 1.25395 0.96189 0.97515 0.97254 1.70000 1.48227 1.35125 1.04151 0.86167 0.80468 0.81422 0.77577 1.19183 1.20807 1.19667 1.20727 0.85078 0.91466 1.02795 1.23119 0.97884 0.90266 0.83643 1.68544 1.06222 1.14809 1.31414 1.23873 0.91010 0.92770 0.98031 1.19515 0.79635 1.06193 0.97823 1.91547 1.28097 1.93087 1.96792 1.24024 0.88173 0.92481 0.99387 1.68343 1.12441 1.12288 1.27207 0.91751 0.90593 0.88053 0.90993 0.92691 0.89740 0.83435 0.97074 0.96457 0.92712 0.91573 0.85986 0.79248 0.76656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.29 71.98 0.74 -1.77 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.36 -11.64 10.22 -51.37 -0.53 -12.16 16 4 C 0.47 17.54 7.53 71.23 0.54 18.08 16 5 O -0.53 -23.15 14.92 21.95 0.33 -22.82 16 6 C 0.07 2.35 5.43 85.55 0.46 2.81 16 7 N -0.52 -21.13 4.29 -909.97 -3.91 -25.04 16 8 C 0.17 8.48 3.59 85.56 0.31 8.78 16 9 C -0.52 -28.45 7.88 25.60 0.20 -28.25 16 10 H 0.06 3.38 6.21 -2.91 -0.02 3.37 16 11 C 0.04 2.04 5.47 84.66 0.46 2.50 16 12 N -0.93 -56.52 13.96 21.45 0.30 -56.22 16 13 Si 0.92 45.84 27.37 68.60 1.88 47.72 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.27 -13.70 6.70 99.48 0.67 -13.04 16 17 C 0.13 4.62 5.17 85.56 0.44 5.06 16 18 C 0.32 11.60 6.41 138.76 0.89 12.49 16 19 N -0.50 -19.28 9.30 -187.69 -1.75 -21.03 16 20 C 0.11 3.43 11.30 84.76 0.96 4.38 16 21 C -0.01 -0.19 7.39 22.55 0.17 -0.02 16 22 F -0.12 -2.69 17.30 44.97 0.78 -1.91 16 23 C 0.13 3.14 11.30 84.76 0.96 4.09 16 24 N -0.49 -15.35 10.33 -187.68 -1.94 -17.29 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 29 H 0.05 1.55 8.13 -2.38 -0.02 1.53 16 30 H 0.08 3.23 6.47 -2.39 -0.02 3.21 16 31 H 0.15 3.77 7.80 -2.38 -0.02 3.75 16 32 H 0.01 0.60 6.01 -2.39 -0.01 0.59 16 33 H 0.02 0.90 5.78 -2.39 -0.01 0.88 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.07 2.69 6.30 -2.39 -0.02 2.67 16 36 H 0.12 3.46 7.86 -2.39 -0.02 3.44 16 37 H 0.19 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.38 328.09 2.79 -69.59 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.05 Total: 9.21 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.57 Total: 29.96 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -7.29 Total: -119.58 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.20 Total: -34.98 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -72.38 2.79 -69.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235013304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.447 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds