Wall clock time and date at job start Tue Mar 31 2020 07:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 116.99890 * 2 1 4 4 C 1.38752 * 120.05896 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94897 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97406 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47208 * 269.97761 * 6 5 4 8 8 C 1.47480 * 111.00642 * 265.97147 * 7 6 5 9 9 C 1.53508 * 87.93717 * 221.29818 * 8 7 6 10 10 C 1.50703 * 114.34507 * 139.67895 * 9 8 7 11 11 H 1.07994 * 120.00451 * 266.07631 * 10 9 8 12 12 C 1.37880 * 119.99271 * 86.07771 * 10 9 8 13 13 N 1.31515 * 119.99298 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00433 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47234 * 90.00222 * 14 12 10 16 16 H 1.48501 * 109.46993 * 209.99919 * 14 12 10 17 17 H 1.48502 * 109.47330 * 330.00052 * 14 12 10 18 18 C 1.47487 * 111.00116 * 170.00177 * 7 6 5 19 19 C 1.38290 * 120.05322 * 359.97438 * 5 4 3 20 20 C 1.38251 * 120.11123 * 0.03797 * 19 5 4 21 21 C 1.38163 * 120.05527 * 0.24024 * 20 19 5 22 22 C 1.50693 * 120.02868 * 179.74173 * 21 20 19 23 23 F 1.39899 * 109.47388 * 29.99618 * 22 21 20 24 24 F 1.39902 * 109.47650 * 149.99682 * 22 21 20 25 25 H 1.09000 * 109.47261 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47116 * 60.00474 * 1 2 3 27 27 H 1.09006 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02576 * 0.02562 * 4 3 2 29 29 H 1.08995 * 109.47386 * 29.98178 * 6 5 4 30 30 H 1.09009 * 109.46901 * 149.98041 * 6 5 4 31 31 H 1.09002 * 113.47286 * 336.06987 * 8 7 6 32 32 H 1.09004 * 113.47842 * 106.52542 * 8 7 6 33 33 H 1.09001 * 114.17198 * 272.37587 * 9 8 7 34 34 H 0.97002 * 120.00106 * 179.97438 * 13 12 10 35 35 H 1.09001 * 113.47347 * 253.47327 * 18 7 6 36 36 H 1.08998 * 113.47181 * 23.93600 * 18 7 6 37 37 H 1.07998 * 119.94582 * 180.02562 * 19 5 4 38 38 H 1.08002 * 119.96904 * 179.97438 * 20 19 5 39 39 H 1.09005 * 109.47154 * 269.99905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 1.1019 4.8698 -0.0011 7 7 0.8357 5.2808 -1.3860 8 6 1.8433 6.2516 -1.8523 9 6 0.7023 7.0301 -2.5222 10 6 0.8153 8.5277 -2.3980 11 1 0.3145 9.0420 -1.5912 12 6 1.5582 9.2412 -3.3146 13 7 1.6572 10.5481 -3.2059 14 14 2.4250 8.3516 -4.7097 15 1 1.5180 8.2677 -5.8825 16 1 3.6525 9.0980 -5.0857 17 1 2.7936 6.9819 -4.2701 18 6 -0.1555 6.3720 -1.4323 19 6 3.3019 3.6758 -0.0005 20 6 4.0560 2.5171 -0.0003 21 6 3.4311 1.2848 -0.0055 22 6 4.2537 0.0222 -0.0111 23 9 5.4654 0.2521 0.6492 24 9 3.5513 -0.9950 0.6441 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.2128 2.3203 -0.0005 29 1 0.1574 4.6913 0.5128 30 1 1.6516 5.6585 0.5127 31 1 2.3258 6.7992 -1.0427 32 1 2.5565 5.8307 -2.5610 33 1 0.4697 6.6984 -3.5341 34 1 2.1801 11.0502 -3.8505 35 1 -1.1362 6.0530 -1.7851 36 1 -0.2063 6.9517 -0.5106 37 1 3.7922 4.6381 -0.0005 38 1 5.1344 2.5752 -0.0003 39 1 4.4519 -0.2778 -1.0401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237275496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:11 Heat of formation + Delta-G solvation = -75.895684 kcal Electronic energy + Delta-G solvation = -23705.715366 eV Core-core repulsion = 19864.580181 eV Total energy + Delta-G solvation = -3841.135185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.00848 -47.01229 -40.42571 -39.23371 -37.54572 -33.47707 -32.39690 -30.30195 -29.71290 -27.62533 -26.88642 -25.11900 -24.66233 -22.40111 -22.34181 -20.91384 -18.74509 -18.12611 -17.55787 -17.35343 -17.11193 -16.83067 -15.96071 -15.86824 -15.24752 -14.89650 -14.57926 -14.46042 -13.95139 -13.86293 -13.67739 -13.39098 -13.30581 -12.96595 -12.75621 -12.52801 -12.34901 -11.88881 -11.84770 -11.68869 -11.32517 -11.20111 -11.08679 -10.81248 -10.41269 -10.01725 -9.98877 -9.70131 -9.19977 -8.93149 -8.61244 -8.35979 -8.23429 -6.15855 -4.16896 1.03184 1.31748 3.04669 3.25890 3.34766 3.38980 3.48847 3.68150 4.11389 4.37366 4.44286 4.61457 4.76146 4.82413 4.93753 4.98884 4.99436 5.09790 5.12101 5.32049 5.33595 5.41335 5.48814 5.60002 5.77362 5.87546 6.01354 6.11249 6.19745 6.23087 6.33161 6.42634 6.52167 6.60665 6.68740 6.89125 7.15489 7.27879 7.61408 7.74129 8.42662 8.86882 9.46948 10.96559 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003490 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.290894 B = 8021.097091 C = 8670.376430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.157 3.843 4 C -0.194 4.194 5 C 0.000 4.000 6 C 0.049 3.951 7 N -0.478 5.478 8 C -0.010 4.010 9 C 0.001 3.999 10 C -0.513 4.513 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.898 5.898 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.257 1.257 18 C 0.009 3.991 19 C -0.149 4.149 20 C -0.050 4.050 21 C -0.215 4.215 22 C 0.324 3.676 23 F -0.204 7.204 24 F -0.192 7.192 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -20.630 6.815 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.111 3.889 4 C -0.213 4.213 5 C -0.001 4.001 6 C -0.079 4.079 7 N -0.200 5.200 8 C -0.139 4.139 9 C -0.019 4.019 10 C -0.551 4.551 11 H 0.092 0.908 12 C -0.128 4.128 13 N -0.535 5.535 14 Si 0.703 3.297 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.182 1.182 18 C -0.120 4.120 19 C -0.168 4.168 20 C -0.068 4.068 21 C -0.216 4.216 22 C 0.270 3.730 23 F -0.186 7.186 24 F -0.173 7.173 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.612 -21.326 6.443 22.336 hybrid contribution 0.460 0.501 -0.100 0.687 sum 2.072 -20.825 6.343 21.868 Atomic orbital electron populations 1.23099 0.78190 1.03955 1.01698 1.86164 1.21532 1.26095 1.88182 1.18583 0.90839 0.84806 0.94679 1.21063 1.00201 0.91213 1.08842 1.19773 0.93637 0.94394 0.92311 1.21723 0.98662 0.93833 0.93679 1.68915 1.08006 1.27337 1.15751 1.24468 0.96942 0.92574 0.99923 1.20498 0.91429 0.95672 0.94257 1.20907 1.31886 0.88843 1.13451 0.90774 1.25011 0.95759 0.94573 0.97460 1.69908 1.40690 1.06160 1.36741 0.86875 0.79403 0.80743 0.82721 1.20262 1.21453 1.18152 1.23829 0.96507 0.91258 1.00394 1.21008 0.93320 0.98506 1.03927 1.20721 1.00225 0.90378 0.95468 1.19686 0.91333 0.95288 1.15317 1.20061 0.76262 0.83985 0.92643 1.92975 1.46572 1.95000 1.84018 1.93020 1.79114 1.61345 1.83867 0.92550 0.92273 0.88181 0.84888 0.90577 0.92372 0.91601 0.91782 0.92580 0.92533 0.91428 0.91906 0.85243 0.84656 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.66 8.43 -19.42 -0.16 -3.83 16 3 C 0.16 2.03 6.58 -39.21 -0.26 1.77 16 4 C -0.19 -2.52 8.69 -39.43 -0.34 -2.87 16 5 C 0.00 -0.01 5.46 -104.65 -0.57 -0.58 16 6 C 0.05 0.74 4.94 -4.98 -0.02 0.71 16 7 N -0.48 -8.57 6.32 -246.10 -1.55 -10.12 16 8 C -0.01 -0.20 6.70 -7.55 -0.05 -0.26 16 9 C 0.00 0.02 2.95 -91.24 -0.27 -0.25 16 10 C -0.51 -13.76 9.38 -34.44 -0.32 -14.08 16 11 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 14 Si 0.88 20.79 27.14 -169.99 -4.61 16.17 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.26 -5.81 5.68 56.52 0.32 -5.49 16 18 C 0.01 0.16 7.25 -7.55 -0.05 0.11 16 19 C -0.15 -2.00 9.70 -39.56 -0.38 -2.39 16 20 C -0.05 -0.61 9.40 -39.60 -0.37 -0.98 16 21 C -0.21 -2.70 5.75 -104.48 -0.60 -3.30 16 22 C 0.32 3.61 5.57 36.00 0.20 3.81 16 23 F -0.20 -2.41 16.48 2.25 0.04 -2.37 16 24 F -0.19 -2.46 15.32 2.25 0.03 -2.43 16 25 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 29 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 30 H 0.06 0.87 7.24 -51.92 -0.38 0.50 16 31 H 0.07 1.34 7.38 -51.93 -0.38 0.96 16 32 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 33 H 0.06 1.29 7.04 -51.93 -0.37 0.92 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.14 1.39 7.60 -52.49 -0.40 1.00 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -30.32 327.91 -7.87 -38.19 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.17 Total: 0.41 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.16 Total: -15.12 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.78 Total: -35.96 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.16 Total: -3.83 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.61 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.32 -7.87 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237275496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.705 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds