Wall clock time and date at job start Tue Mar 31 2020 07:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 116.99890 * 2 1 4 4 C 1.38752 * 120.05896 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94897 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97406 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47208 * 269.97761 * 6 5 4 8 8 C 1.47480 * 111.00642 * 265.97147 * 7 6 5 9 9 C 1.53508 * 87.93717 * 221.29818 * 8 7 6 10 10 C 1.50703 * 114.34507 * 139.67895 * 9 8 7 11 11 H 1.07994 * 120.00451 * 266.07631 * 10 9 8 12 12 C 1.37880 * 119.99271 * 86.07771 * 10 9 8 13 13 N 1.31515 * 119.99298 * 180.02562 * 12 10 9 14 14 Si 1.86791 * 120.00433 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47234 * 90.00222 * 14 12 10 16 16 H 1.48501 * 109.46993 * 209.99919 * 14 12 10 17 17 H 1.48502 * 109.47330 * 330.00052 * 14 12 10 18 18 C 1.47487 * 111.00116 * 170.00177 * 7 6 5 19 19 C 1.38290 * 120.05322 * 359.97438 * 5 4 3 20 20 C 1.38251 * 120.11123 * 0.03797 * 19 5 4 21 21 C 1.38163 * 120.05527 * 0.24024 * 20 19 5 22 22 C 1.50693 * 120.02868 * 179.74173 * 21 20 19 23 23 F 1.39899 * 109.47388 * 29.99618 * 22 21 20 24 24 F 1.39902 * 109.47650 * 149.99682 * 22 21 20 25 25 H 1.09000 * 109.47261 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47116 * 60.00474 * 1 2 3 27 27 H 1.09006 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02576 * 0.02562 * 4 3 2 29 29 H 1.08995 * 109.47386 * 29.98178 * 6 5 4 30 30 H 1.09009 * 109.46901 * 149.98041 * 6 5 4 31 31 H 1.09002 * 113.47286 * 336.06987 * 8 7 6 32 32 H 1.09004 * 113.47842 * 106.52542 * 8 7 6 33 33 H 1.09001 * 114.17198 * 272.37587 * 9 8 7 34 34 H 0.97002 * 120.00106 * 179.97438 * 13 12 10 35 35 H 1.09001 * 113.47347 * 253.47327 * 18 7 6 36 36 H 1.08998 * 113.47181 * 23.93600 * 18 7 6 37 37 H 1.07998 * 119.94582 * 180.02562 * 19 5 4 38 38 H 1.08002 * 119.96904 * 179.97438 * 20 19 5 39 39 H 1.09005 * 109.47154 * 269.99905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 1.1019 4.8698 -0.0011 7 7 0.8357 5.2808 -1.3860 8 6 1.8433 6.2516 -1.8523 9 6 0.7023 7.0301 -2.5222 10 6 0.8153 8.5277 -2.3980 11 1 0.3145 9.0420 -1.5912 12 6 1.5582 9.2412 -3.3146 13 7 1.6572 10.5481 -3.2059 14 14 2.4250 8.3516 -4.7097 15 1 1.5180 8.2677 -5.8825 16 1 3.6525 9.0980 -5.0857 17 1 2.7936 6.9819 -4.2701 18 6 -0.1555 6.3720 -1.4323 19 6 3.3019 3.6758 -0.0005 20 6 4.0560 2.5171 -0.0003 21 6 3.4311 1.2848 -0.0055 22 6 4.2537 0.0222 -0.0111 23 9 5.4654 0.2521 0.6492 24 9 3.5513 -0.9950 0.6441 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.2128 2.3203 -0.0005 29 1 0.1574 4.6913 0.5128 30 1 1.6516 5.6585 0.5127 31 1 2.3258 6.7992 -1.0427 32 1 2.5565 5.8307 -2.5610 33 1 0.4697 6.6984 -3.5341 34 1 2.1801 11.0502 -3.8505 35 1 -1.1362 6.0530 -1.7851 36 1 -0.2063 6.9517 -0.5106 37 1 3.7922 4.6381 -0.0005 38 1 5.1344 2.5752 -0.0003 39 1 4.4519 -0.2778 -1.0401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237275496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:10 Heat of formation + Delta-G solvation = -95.266396 kcal Electronic energy + Delta-G solvation = -23706.555343 eV Core-core repulsion = 19864.580181 eV Total energy + Delta-G solvation = -3841.975162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89481 -47.91079 -41.43540 -40.63171 -38.49872 -34.97064 -34.05250 -31.22623 -31.14073 -28.38625 -28.29021 -26.69454 -25.98252 -23.75182 -23.29008 -21.99341 -20.43254 -19.24409 -18.87978 -18.40135 -18.25474 -17.78582 -16.98942 -16.81924 -16.60822 -16.39358 -15.71649 -15.52504 -15.39901 -14.94088 -14.85008 -14.72101 -14.39627 -14.22648 -13.92982 -13.68922 -13.44370 -13.34948 -12.97209 -12.89749 -12.65215 -12.45512 -12.09292 -12.01931 -11.89574 -11.80008 -11.53407 -11.37665 -11.09094 -10.64809 -9.98077 -9.76906 -9.26973 -8.29040 -6.34121 0.04771 0.35848 1.38518 1.41235 1.53101 2.26015 2.37995 2.49433 2.82591 3.04654 3.26749 3.35567 3.54497 3.67329 3.93763 4.02939 4.07766 4.15107 4.19765 4.32914 4.35181 4.39266 4.45606 4.55559 4.58129 4.67577 4.72716 4.74846 4.83547 4.90349 5.04148 5.13299 5.24972 5.30740 5.48004 5.60002 5.63397 5.67076 6.22029 6.29236 6.29949 6.72064 7.33177 8.86953 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003490 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.290894 B = 8021.097091 C = 8670.376430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.151 3.849 4 C -0.196 4.196 5 C -0.016 4.016 6 C 0.052 3.948 7 N -0.470 5.470 8 C 0.001 3.999 9 C -0.016 4.016 10 C -0.514 4.514 11 H 0.036 0.964 12 C 0.017 3.983 13 N -0.948 5.948 14 Si 0.940 3.060 15 H -0.271 1.271 16 H -0.289 1.289 17 H -0.237 1.237 18 C 0.018 3.982 19 C -0.161 4.161 20 C -0.049 4.049 21 C -0.222 4.222 22 C 0.322 3.678 23 F -0.209 7.209 24 F -0.203 7.203 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -23.303 6.467 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.104 3.896 4 C -0.215 4.215 5 C -0.017 4.017 6 C -0.076 4.076 7 N -0.192 5.192 8 C -0.128 4.128 9 C -0.035 4.035 10 C -0.552 4.552 11 H 0.054 0.946 12 C -0.181 4.181 13 N -0.588 5.588 14 Si 0.764 3.236 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.160 1.160 18 C -0.111 4.111 19 C -0.180 4.180 20 C -0.067 4.067 21 C -0.224 4.224 22 C 0.269 3.731 23 F -0.190 7.190 24 F -0.184 7.184 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.828 -24.028 6.111 24.860 hybrid contribution 0.306 1.298 0.112 1.338 sum 2.134 -22.730 6.223 23.663 Atomic orbital electron populations 1.23369 0.76429 1.05672 1.02236 1.86160 1.23392 1.25608 1.87960 1.18725 0.91178 0.85192 0.94472 1.21192 1.00976 0.90865 1.08451 1.19728 0.93843 0.94233 0.93885 1.21723 0.99839 0.94283 0.91788 1.68859 1.06429 1.25854 1.18030 1.24208 0.96440 0.92597 0.99549 1.20504 0.94446 0.93030 0.95563 1.21149 1.30699 0.91348 1.11972 0.94610 1.25872 0.96757 0.95135 1.00310 1.70053 1.42427 1.08042 1.38282 0.85841 0.78067 0.80338 0.79341 1.19688 1.21527 1.15993 1.23702 0.97191 0.91209 0.98972 1.21124 0.93387 0.99054 1.04391 1.20906 1.01097 0.89947 0.94774 1.19964 0.91683 0.95998 1.14758 1.20353 0.75676 0.83190 0.93868 1.92965 1.46767 1.95001 1.84312 1.92996 1.79435 1.61724 1.84265 0.91797 0.91885 0.86008 0.83569 0.88821 0.92658 0.92203 0.91689 0.92522 0.92498 0.89678 0.92155 0.85209 0.82952 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -6.87 8.43 -92.39 -0.78 -7.65 16 3 C 0.15 3.58 6.58 22.51 0.15 3.72 16 4 C -0.20 -4.66 8.69 22.37 0.19 -4.46 16 5 C -0.02 -0.43 5.46 -19.88 -0.11 -0.53 16 6 C 0.05 1.44 4.94 85.56 0.42 1.87 16 7 N -0.47 -15.87 6.32 -932.51 -5.89 -21.76 16 8 C 0.00 0.05 6.70 83.57 0.56 0.61 16 9 C -0.02 -0.71 2.95 -11.20 -0.03 -0.74 16 10 C -0.51 -28.04 9.38 25.60 0.24 -27.80 16 11 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 12 C 0.02 0.95 5.47 84.66 0.46 1.42 16 13 N -0.95 -57.76 13.96 21.45 0.30 -57.47 16 14 Si 0.94 42.72 27.14 68.60 1.86 44.59 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.24 -9.87 5.68 99.48 0.56 -9.31 16 18 C 0.02 0.65 7.25 83.57 0.61 1.26 16 19 C -0.16 -4.06 9.70 22.29 0.22 -3.85 16 20 C -0.05 -1.11 9.40 22.26 0.21 -0.90 16 21 C -0.22 -5.11 5.75 -19.77 -0.11 -5.22 16 22 C 0.32 6.41 5.57 71.23 0.40 6.81 16 23 F -0.21 -4.50 16.48 44.97 0.74 -3.75 16 24 F -0.20 -4.80 15.32 44.97 0.69 -4.12 16 25 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 26 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 27 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.15 2.96 6.30 -2.91 -0.02 2.94 16 29 H 0.09 2.29 8.02 -2.39 -0.02 2.27 16 30 H 0.06 1.59 7.24 -2.38 -0.02 1.57 16 31 H 0.06 2.39 7.38 -2.39 -0.02 2.37 16 32 H 0.06 2.52 7.11 -2.38 -0.02 2.51 16 33 H 0.06 2.51 7.04 -2.39 -0.02 2.49 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 37 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.80 7.60 -2.91 -0.02 2.78 16 39 H 0.15 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -65.43 327.91 2.16 -63.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.92 Total: 13.35 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.31 Total: -26.47 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -5.59 Total: -79.22 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.78 Total: -7.65 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 1.43 Total: -7.87 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.86 Total: 44.59 kcal Total: -65.43 2.16 -63.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237275496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.997 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds