Wall clock time and date at job start Tue Mar 31 2020 07:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47184 * 2 1 4 4 C 1.35898 * 117.00148 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.04950 * 180.02562 * 4 3 2 6 6 C 1.38130 * 119.96841 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.07193 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.95150 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46991 * 105.00118 * 8 7 6 10 10 C 1.46897 * 110.99875 * 293.95334 * 9 8 7 11 11 C 1.52999 * 109.47045 * 164.00434 * 10 9 8 12 12 C 1.46898 * 111.00103 * 169.99562 * 9 8 7 13 13 C 1.50703 * 109.47344 * 284.32060 * 12 9 8 14 14 H 1.07995 * 119.99791 * 4.73477 * 13 12 9 15 15 C 1.37876 * 119.99904 * 184.74174 * 13 12 9 16 16 N 1.31518 * 120.00112 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99996 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47201 * 59.99342 * 17 15 13 19 19 H 1.48502 * 109.47082 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46831 * 299.99404 * 17 15 13 21 21 C 1.38364 * 120.09644 * 0.02562 * 7 6 5 22 22 Cl 1.73604 * 119.98775 * 180.02562 * 21 7 6 23 23 C 1.38282 * 120.02712 * 359.72618 * 21 7 6 24 24 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47354 * 299.99593 * 1 2 3 26 26 H 1.09003 * 109.47391 * 59.99867 * 1 2 3 27 27 H 1.09000 * 109.46861 * 240.00233 * 2 1 3 28 28 H 1.09001 * 109.46972 * 120.00441 * 2 1 3 29 29 H 1.07996 * 120.01981 * 0.02562 * 5 4 3 30 30 H 1.08007 * 119.96544 * 180.02562 * 6 5 4 31 31 H 1.09008 * 109.46669 * 224.99801 * 8 7 6 32 32 H 1.09000 * 109.47433 * 344.99555 * 8 7 6 33 33 H 1.09002 * 109.46953 * 283.99907 * 10 9 8 34 34 H 1.08997 * 109.47026 * 44.00473 * 10 9 8 35 35 H 1.09004 * 109.47050 * 299.31656 * 11 10 9 36 36 H 1.09004 * 109.47543 * 59.30901 * 11 10 9 37 37 H 1.09002 * 109.47262 * 179.31673 * 11 10 9 38 38 H 1.09002 * 109.46867 * 44.31387 * 12 9 8 39 39 H 1.08994 * 109.47317 * 164.31404 * 12 9 8 40 40 H 0.97002 * 120.00022 * 180.02562 * 16 15 13 41 41 H 1.07999 * 120.03670 * 180.27644 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8850 2.8071 0.0000 6 6 5.2547 2.9862 -0.0011 7 6 6.0968 1.8895 -0.0022 8 6 7.5906 2.0880 -0.0028 9 7 8.1239 1.7964 1.3346 10 6 7.6417 2.7748 2.3184 11 6 7.8733 2.2344 3.7309 12 6 9.5919 1.7472 1.3168 13 6 10.0437 0.4526 0.6917 14 1 9.3167 -0.2277 0.2735 15 6 11.3853 0.1366 0.6538 16 7 12.2707 0.9652 1.1628 17 14 11.9453 -1.4686 -0.1204 18 1 11.5282 -1.5030 -1.5451 19 1 13.4244 -1.5696 -0.0354 20 1 11.3285 -2.6090 0.6037 21 6 5.5699 0.6101 -0.0027 22 17 6.6298 -0.7648 -0.0033 23 6 4.1994 0.4262 0.0036 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.2282 3.6643 0.0012 30 1 5.6683 3.9839 -0.0003 31 1 8.0461 1.4159 -0.7301 32 1 7.8200 3.1200 -0.2683 33 1 8.1842 3.7121 2.1946 34 1 6.5765 2.9486 2.1661 35 1 7.3211 1.3033 3.8588 36 1 8.9372 2.0490 3.8792 37 1 7.5266 2.9656 4.4612 38 1 9.9764 2.5851 0.7352 39 1 9.9699 1.8094 2.3372 40 1 13.2145 0.7431 1.1359 41 1 3.7880 -0.5724 0.0077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238400997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:35 Heat of formation + Delta-G solvation = -23.651064 kcal Electronic energy + Delta-G solvation = -21941.988313 eV Core-core repulsion = 18654.915305 eV Total energy + Delta-G solvation = -3287.073008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21596 -38.22388 -36.38387 -35.81686 -32.61408 -32.19290 -30.96723 -30.62659 -29.33189 -26.67390 -24.65613 -23.95385 -22.53565 -22.06379 -21.11943 -19.61082 -18.35395 -16.46380 -16.26910 -16.10570 -15.55034 -14.89162 -14.73427 -14.23291 -13.91336 -13.76391 -13.60068 -13.54479 -13.30105 -12.79008 -12.53546 -12.35664 -11.99859 -11.81440 -11.56012 -11.33189 -11.23435 -11.05509 -10.93574 -10.77798 -10.74959 -10.60248 -10.46181 -10.28181 -10.16027 -9.52954 -9.14070 -8.70134 -8.34530 -7.96843 -7.16084 -5.94683 -3.93906 1.29287 1.43986 2.58928 3.07498 3.37225 3.41100 3.44343 3.72412 4.49049 4.67930 4.70166 4.85081 4.96224 5.01813 5.12252 5.17181 5.24061 5.41525 5.42655 5.51639 5.64174 5.73081 5.76297 5.76866 5.93237 6.07545 6.15854 6.18429 6.32692 6.41068 6.49516 6.64048 6.69646 6.74683 6.89316 7.30809 7.32557 7.40501 7.93535 8.19919 8.27785 8.63724 9.15385 9.69456 11.16273 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.004286 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.703443 B = 6530.901420 C = 7352.635152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.316 6.316 4 C 0.130 3.870 5 C -0.153 4.153 6 C -0.070 4.070 7 C -0.093 4.093 8 C 0.100 3.900 9 N -0.523 5.523 10 C 0.049 3.951 11 C -0.141 4.141 12 C 0.192 3.808 13 C -0.498 4.498 14 H 0.070 0.930 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.026 3.974 22 Cl -0.038 7.038 23 C -0.207 4.207 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.042 0.958 38 H -0.013 1.013 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.229 1.174 -1.962 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.230 6.230 4 C 0.085 3.915 5 C -0.172 4.172 6 C -0.089 4.089 7 C -0.095 4.095 8 C -0.028 4.028 9 N -0.248 5.248 10 C -0.079 4.079 11 C -0.199 4.199 12 C 0.068 3.932 13 C -0.537 4.537 14 H 0.088 0.912 15 C -0.146 4.146 16 N -0.543 5.543 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.002 4.002 22 Cl -0.008 7.008 23 C -0.227 4.227 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.005 0.995 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.240 0.736 -1.783 20.332 hybrid contribution 0.899 -0.434 -0.582 1.156 sum -19.341 0.302 -2.365 19.487 Atomic orbital electron populations 1.21767 0.92813 1.02800 1.03416 1.22784 0.95747 0.82121 1.01640 1.86050 1.18875 1.29161 1.88931 1.18728 0.81964 0.93642 0.97213 1.20381 0.95080 0.94654 1.07075 1.20863 0.91805 0.98537 0.97655 1.19930 0.97406 0.90954 1.01161 1.20939 0.88200 0.99500 0.94131 1.62165 1.13047 1.46414 1.03129 1.22014 0.98831 0.93475 0.93591 1.21719 1.02601 1.00373 0.95199 1.19786 0.79609 0.96297 0.97558 1.21249 0.91620 1.04139 1.36717 0.91196 1.24957 0.96841 0.96838 0.95977 1.69947 1.01547 1.36388 1.46393 0.86684 0.77314 0.84320 0.79861 1.20310 1.21461 1.20294 1.20573 0.90140 0.89524 0.99963 1.98424 1.64878 1.41340 1.96167 1.21052 0.92340 0.98780 1.10523 0.90421 0.91556 0.91586 0.91976 0.91906 0.85171 0.84917 0.88672 0.95220 0.96200 0.92411 0.92558 0.92040 0.93867 0.99513 0.94467 0.93071 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.81 10.14 -19.42 -0.20 -4.00 16 4 C 0.13 1.73 6.69 -39.22 -0.26 1.47 16 5 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 6 C -0.07 -0.96 8.66 -39.61 -0.34 -1.30 16 7 C -0.09 -1.52 4.48 -104.57 -0.47 -1.99 16 8 C 0.10 1.91 4.25 -4.98 -0.02 1.89 16 9 N -0.52 -11.04 4.26 -237.52 -1.01 -12.05 16 10 C 0.05 0.91 5.55 -3.83 -0.02 0.88 16 11 C -0.14 -2.49 9.99 37.16 0.37 -2.12 16 12 C 0.19 4.91 4.59 -4.98 -0.02 4.89 16 13 C -0.50 -13.76 8.61 -34.44 -0.30 -14.06 16 14 H 0.07 1.88 6.77 -52.49 -0.36 1.53 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 C 0.03 0.42 6.31 -39.52 -0.25 0.17 16 22 Cl -0.04 -0.68 26.68 -51.86 -1.38 -2.06 16 23 C -0.21 -2.91 8.82 -39.40 -0.35 -3.26 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 28 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.57 8.00 -52.48 -0.42 1.15 16 31 H 0.10 2.00 6.76 -51.92 -0.35 1.65 16 32 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 34 H 0.06 0.97 6.13 -51.93 -0.32 0.65 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H -0.01 -0.35 8.00 -51.93 -0.42 -0.77 16 39 H 0.04 1.02 6.24 -51.93 -0.32 0.70 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -30.17 347.45 -9.36 -39.53 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.15 Total: -3.15 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.57 Total: -14.29 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.28 Total: -38.15 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.20 Total: -4.00 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.38 Total: -2.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.17 -9.36 -39.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238400997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.878 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds