Wall clock time and date at job start Tue Mar 31 2020 07:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47211 * 2 1 4 4 C 1.35944 * 117.00076 * 179.97438 * 3 2 1 5 5 C 1.38709 * 120.02142 * 0.02562 * 4 3 2 6 6 C 1.38312 * 119.94788 * 180.02562 * 5 4 3 7 7 F 1.35103 * 120.00466 * 179.97438 * 6 5 4 8 8 C 1.38693 * 119.98678 * 359.97438 * 6 5 4 9 9 F 1.35097 * 119.98295 * 179.97438 * 8 6 5 10 10 C 1.38368 * 120.03856 * 0.02562 * 8 6 5 11 11 C 1.38208 * 120.05594 * 0.28133 * 10 8 6 12 12 C 1.50700 * 119.99538 * 179.70279 * 11 10 8 13 13 N 1.46899 * 109.46756 * 259.99623 * 12 11 10 14 14 C 1.47484 * 110.99969 * 265.97001 * 13 12 11 15 15 C 1.53509 * 87.93223 * 221.29907 * 14 13 12 16 16 C 1.50695 * 114.34585 * 139.68194 * 15 14 13 17 17 H 1.07999 * 120.00367 * 266.07513 * 16 15 14 18 18 C 1.37877 * 120.00384 * 86.07591 * 16 15 14 19 19 N 1.31521 * 119.99248 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00692 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46647 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47429 * 119.99520 * 20 18 16 23 23 H 1.48499 * 109.46733 * 239.99830 * 20 18 16 24 24 C 1.47479 * 110.99941 * 170.00165 * 13 12 11 25 25 H 1.09010 * 109.46772 * 60.00100 * 1 2 3 26 26 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47145 * 300.00565 * 1 2 3 28 28 H 1.09007 * 109.46988 * 239.99713 * 2 1 3 29 29 H 1.08998 * 109.47184 * 119.99733 * 2 1 3 30 30 H 1.08001 * 120.02237 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.96922 * 179.97438 * 10 8 6 32 32 H 1.09001 * 109.47001 * 19.99461 * 12 11 10 33 33 H 1.08994 * 109.47080 * 139.99585 * 12 11 10 34 34 H 1.09004 * 113.46920 * 336.06385 * 14 13 12 35 35 H 1.08994 * 113.47583 * 106.52687 * 14 13 12 36 36 H 1.09000 * 114.17048 * 272.37966 * 15 14 13 37 37 H 0.97000 * 119.99429 * 179.97438 * 19 18 16 38 38 H 1.09010 * 113.47318 * 253.47037 * 24 13 12 39 39 H 1.09004 * 113.47593 * 23.87230 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3541 1.5254 0.0005 5 6 4.1995 0.4256 0.0005 6 6 5.5704 0.6086 0.0016 7 9 6.3949 -0.4617 0.0021 8 6 6.0986 1.8910 0.0022 9 9 7.4377 2.0697 0.0038 10 6 5.2548 2.9877 0.0022 11 6 3.8846 2.8068 0.0075 12 6 2.9669 4.0021 0.0143 13 7 2.4837 4.2406 1.3809 14 6 1.1847 3.5791 1.6051 15 6 0.7378 4.8371 2.3628 16 6 -0.6842 5.2545 2.0897 17 1 -0.8949 5.9847 1.3223 18 6 -1.7166 4.7042 2.8194 19 7 -1.4601 3.8146 3.7536 20 14 -3.4794 5.2210 2.4804 21 1 -3.4988 6.2273 1.3886 22 1 -4.2738 4.0340 2.0744 23 1 -4.0666 5.8129 3.7092 24 6 1.7786 5.5325 1.4742 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7874 -0.5727 -0.0003 31 1 5.6673 3.9858 0.0031 32 1 3.5102 4.8792 -0.3372 33 1 2.1185 3.8125 -0.6432 34 1 0.6234 3.4024 0.6876 35 1 1.2519 2.6930 2.2362 36 1 0.9886 4.8320 3.4235 37 1 -2.1863 3.4277 4.2672 38 1 2.3492 6.3020 1.9945 39 1 1.3766 5.8776 0.5216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238653252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:11 Heat of formation + Delta-G solvation = -86.654360 kcal Electronic energy + Delta-G solvation = -24222.930745 eV Core-core repulsion = 20381.329029 eV Total energy + Delta-G solvation = -3841.601716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.52806 -49.59344 -41.55142 -40.27415 -38.38365 -34.84397 -33.47763 -32.60976 -30.89477 -29.65873 -27.24800 -26.49615 -25.27765 -24.45195 -23.09855 -22.33628 -20.40147 -19.69897 -18.71516 -18.52544 -18.17162 -17.55552 -17.22134 -16.98433 -16.61480 -16.18428 -16.01915 -15.71788 -15.66740 -15.35418 -15.15516 -14.91917 -14.21125 -14.03520 -13.82475 -13.66630 -13.30355 -13.22145 -13.01299 -12.85554 -12.68467 -12.59383 -12.34696 -12.15102 -11.87998 -11.61589 -11.51425 -11.14619 -10.80960 -10.45278 -10.09553 -9.63932 -9.17250 -8.10954 -6.21427 -0.19169 -0.02950 1.42962 1.45509 1.56464 2.09144 2.24387 2.45472 2.74281 3.16622 3.18869 3.37820 3.50646 3.70769 3.86405 4.04094 4.06211 4.17811 4.24980 4.33860 4.39550 4.55602 4.59830 4.70155 4.74286 4.79782 4.81477 4.89561 4.92897 4.93631 5.02661 5.13829 5.26606 5.35883 5.54990 5.58711 5.67903 5.90279 6.28133 6.34617 6.44834 6.87846 7.46604 8.98954 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.004189 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.809221 B = 6683.134450 C = 7627.296736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.312 6.312 4 C 0.157 3.843 5 C -0.217 4.217 6 C 0.097 3.903 7 F -0.132 7.132 8 C 0.016 3.984 9 F -0.137 7.137 10 C -0.065 4.065 11 C -0.091 4.091 12 C 0.068 3.932 13 N -0.481 5.481 14 C 0.046 3.954 15 C 0.014 3.986 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.280 1.280 23 H -0.282 1.282 24 C 0.011 3.989 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 -7.396 -10.782 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.225 6.225 4 C 0.110 3.890 5 C -0.236 4.236 6 C 0.077 3.923 7 F -0.110 7.110 8 C -0.004 4.004 9 F -0.116 7.116 10 C -0.085 4.085 11 C -0.093 4.093 12 C -0.060 4.060 13 N -0.204 5.204 14 C -0.083 4.083 15 C -0.006 4.006 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.779 3.221 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.118 4.118 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.188 0.812 31 H 0.189 0.811 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.177 -7.554 -10.259 16.306 hybrid contribution -1.097 -0.263 -0.287 1.164 sum 9.079 -7.817 -10.547 15.962 Atomic orbital electron populations 1.21787 0.92385 1.03965 1.02627 1.23119 0.96420 0.80629 1.02702 1.86292 1.17590 1.31316 1.87333 1.18723 0.83346 0.92952 0.94003 1.21140 0.90800 1.00941 1.10715 1.17393 0.88193 0.82089 1.04650 1.91506 1.71678 1.53907 1.93938 1.17534 0.78056 0.92826 1.11971 1.91486 1.29379 1.96028 1.94678 1.20888 0.90875 0.99194 0.97499 1.19119 0.93443 0.92782 1.03913 1.21458 0.97360 0.95461 0.91761 1.68847 1.22392 1.06060 1.23060 1.23574 0.88147 0.97966 0.98610 1.20113 0.93169 0.93239 0.94040 1.21382 0.91878 1.24025 1.19077 0.92261 1.25771 1.03034 0.94867 0.94516 1.70115 1.33164 1.29454 1.23305 0.85579 0.80090 0.78266 0.78169 1.18791 1.20606 1.20821 1.23835 0.95142 0.92973 0.99806 0.91770 0.87688 0.93853 0.89370 0.91225 0.81238 0.81065 0.88170 0.92900 0.92975 0.94776 0.95646 0.93013 0.90642 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 10.28 71.98 0.74 -2.70 16 2 C 0.05 1.00 5.46 71.98 0.39 1.40 16 3 O -0.31 -9.26 7.52 -92.92 -0.70 -9.96 16 4 C 0.16 4.41 6.65 22.49 0.15 4.56 16 5 C -0.22 -5.22 9.01 22.40 0.20 -5.01 16 6 C 0.10 2.50 7.30 22.40 0.16 2.66 16 7 F -0.13 -3.41 17.18 44.97 0.77 -2.64 16 8 C 0.02 0.42 7.30 22.41 0.16 0.59 16 9 F -0.14 -3.65 17.18 44.97 0.77 -2.88 16 10 C -0.07 -1.61 9.64 22.29 0.21 -1.40 16 11 C -0.09 -2.58 5.48 -19.76 -0.11 -2.69 16 12 C 0.07 2.07 4.70 85.56 0.40 2.48 16 13 N -0.48 -18.59 6.32 -932.50 -5.89 -24.48 16 14 C 0.05 2.10 5.74 83.57 0.48 2.58 16 15 C 0.01 0.68 3.76 -11.20 -0.04 0.64 16 16 C -0.53 -28.21 8.83 25.60 0.23 -27.99 16 17 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 18 C 0.02 0.94 5.46 84.65 0.46 1.41 16 19 N -0.92 -53.33 13.26 21.45 0.28 -53.04 16 20 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.01 0.44 7.24 83.57 0.61 1.04 16 25 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.43 7.66 -2.38 -0.02 1.41 16 29 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 30 H 0.17 3.19 6.30 -2.91 -0.02 3.17 16 31 H 0.17 3.40 8.04 -2.91 -0.02 3.38 16 32 H 0.10 2.54 7.94 -2.39 -0.02 2.52 16 33 H 0.05 1.71 7.00 -2.39 -0.02 1.69 16 34 H 0.05 2.40 7.09 -2.39 -0.02 2.38 16 35 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 1.44 8.11 -2.39 -0.02 1.43 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 39 H 0.07 2.47 7.87 -2.38 -0.02 2.45 16 Total: -1.00 -61.84 333.68 2.38 -59.46 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.06 Total: 11.55 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.05 Total: -22.44 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -5.61 Total: -77.52 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.70 Total: -9.96 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 1.55 Total: -5.52 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -61.84 2.38 -59.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238653252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.195 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds