Wall clock time and date at job start Tue Mar 31 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46711 * 111.00064 * 2 1 4 4 C 1.53424 * 108.66500 * 285.90179 * 3 2 1 5 5 O 1.43186 * 107.81091 * 296.78177 * 4 3 2 6 6 C 1.36044 * 116.58456 * 44.81702 * 5 4 3 7 7 C 1.38572 * 118.88123 * 165.64460 * 6 5 4 8 8 C 1.39934 * 118.49332 * 179.97438 * 7 6 5 9 9 C 1.48294 * 120.56984 * 179.65905 * 8 7 6 10 10 C 1.38953 * 119.62016 * 179.72772 * 9 8 7 11 11 C 1.40817 * 118.75905 * 179.71764 * 10 9 8 12 12 C 1.41535 * 120.98637 * 180.30018 * 11 10 9 13 13 H 1.07999 * 120.00076 * 203.51830 * 12 11 10 14 14 C 1.40046 * 119.99753 * 23.52102 * 12 11 10 15 15 N 1.30741 * 119.99926 * 17.03608 * 14 12 11 16 16 Si 1.86799 * 120.00049 * 197.03830 * 14 12 11 17 17 H 1.48506 * 109.47091 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47195 * 119.99716 * 16 14 12 19 19 H 1.48501 * 109.47337 * 240.00117 * 16 14 12 20 20 C 1.41155 * 118.03167 * 0.54579 * 11 10 9 21 21 C 1.37711 * 119.08630 * 359.73534 * 20 11 10 22 22 N 1.31947 * 121.15991 * 359.97438 * 21 20 11 23 23 C 1.39189 * 118.86406 * 359.44035 * 8 7 6 24 24 N 1.31603 * 120.81689 * 0.58704 * 23 8 7 25 25 C 1.32959 * 122.21747 * 359.78273 * 24 23 8 26 26 H 1.09006 * 109.47250 * 59.99561 * 1 2 3 27 27 H 1.08996 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47156 * 300.00228 * 1 2 3 29 29 H 1.09007 * 109.60207 * 166.14539 * 3 2 1 30 30 H 1.09005 * 109.74070 * 45.73850 * 3 2 1 31 31 H 1.08999 * 109.79171 * 177.21023 * 4 3 2 32 32 H 1.08999 * 109.78978 * 56.36115 * 4 3 2 33 33 H 1.08005 * 120.75293 * 359.72119 * 7 6 5 34 34 H 1.08006 * 120.61962 * 359.97438 * 10 9 8 35 35 H 0.97002 * 119.99619 * 180.02562 * 15 14 12 36 36 H 1.08006 * 120.45940 * 179.75285 * 20 11 10 37 37 H 1.07995 * 119.42494 * 180.02562 * 21 20 11 38 38 H 1.07997 * 119.59435 * 180.34434 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9947 1.3697 0.0000 4 6 1.7989 1.9708 -1.3979 5 8 2.5768 1.1989 -2.3195 6 6 2.5044 -0.1537 -2.1936 7 6 2.9822 -0.9483 -3.2235 8 6 2.9042 -2.3386 -3.0853 9 6 3.3948 -3.2323 -4.1622 10 6 3.3130 -4.6101 -4.0018 11 6 3.7787 -5.4417 -5.0384 12 6 3.7122 -6.8511 -4.9274 13 1 4.3812 -7.4706 -5.5064 14 6 2.7789 -7.4424 -4.0669 15 7 1.7638 -6.7465 -3.6258 16 14 2.9843 -9.2255 -3.5492 17 1 4.2048 -9.7871 -4.1820 18 1 3.1130 -9.3003 -2.0717 19 1 1.7983 -10.0067 -3.9830 20 6 4.3187 -4.8281 -6.1892 21 6 4.3640 -3.4534 -6.2561 22 7 3.9124 -2.7064 -5.2666 23 6 2.3625 -2.8684 -1.9177 24 7 1.9190 -2.0799 -0.9619 25 6 1.9677 -0.7546 -1.0567 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.0566 1.3538 0.2459 30 1 1.4582 1.9700 0.7348 31 1 2.1386 3.0064 -1.4052 32 1 0.7457 1.9250 -1.6751 33 1 3.4015 -0.5045 -4.1145 34 1 2.8962 -5.0352 -3.1007 35 1 1.1175 -7.1560 -3.0294 36 1 4.6910 -5.4285 -7.0061 37 1 4.7757 -2.9782 -7.1342 38 1 2.3018 -3.9398 -1.7963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239603477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:25 Heat of formation + Delta-G solvation = 22.520377 kcal Electronic energy + Delta-G solvation = -23103.755778 eV Core-core repulsion = 19717.577420 eV Total energy + Delta-G solvation = -3386.178358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.46127 -40.44627 -39.18700 -37.65427 -36.05850 -33.85364 -32.63422 -32.40958 -30.61365 -29.44580 -27.97103 -26.65809 -25.85494 -24.49011 -23.25607 -22.98190 -21.36747 -19.66434 -18.69409 -18.35194 -18.23329 -17.24275 -16.63526 -16.34277 -16.13733 -15.99042 -15.87242 -15.48946 -15.30240 -15.00959 -14.59890 -14.38571 -14.23885 -13.93369 -13.60811 -13.19265 -13.16188 -13.02622 -12.85128 -12.69880 -12.56072 -12.22300 -11.96272 -11.89090 -11.38876 -11.19319 -10.75668 -10.02810 -9.94589 -9.80760 -9.63228 -8.83079 -8.68456 -6.58305 -0.38901 0.17127 0.96319 1.02723 1.40418 1.54629 1.56277 2.10207 2.18024 2.25151 2.54775 2.85362 3.23224 3.55108 3.71878 3.72749 3.74274 3.94981 3.99752 4.05069 4.12889 4.30541 4.44434 4.46505 4.59676 4.64008 4.78858 4.83352 4.88863 4.89858 5.00802 5.11697 5.16257 5.30930 5.42111 5.50211 5.64173 5.79917 5.89058 6.14920 6.17126 6.46513 6.75581 6.77823 6.91108 7.62178 8.21793 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.004134 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.785688 B = 6771.604964 C = 7952.017013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.494 5.494 3 C 0.019 3.981 4 C 0.011 3.989 5 O -0.316 6.316 6 C 0.039 3.961 7 C -0.073 4.073 8 C -0.061 4.061 9 C 0.136 3.864 10 C -0.209 4.209 11 C 0.096 3.904 12 C -0.481 4.481 13 H 0.086 0.914 14 C 0.040 3.960 15 N -0.810 5.810 16 Si 0.985 3.015 17 H -0.256 1.256 18 H -0.263 1.263 19 H -0.264 1.264 20 C -0.286 4.286 21 C 0.104 3.896 22 N -0.576 5.576 23 C 0.099 3.901 24 N -0.470 5.470 25 C 0.230 3.770 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.294 0.706 36 H 0.118 0.882 37 H 0.160 0.840 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 12.683 7.564 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.212 5.212 3 C -0.108 4.108 4 C -0.065 4.065 5 O -0.230 6.230 6 C -0.012 4.012 7 C -0.099 4.099 8 C -0.065 4.065 9 C 0.005 3.995 10 C -0.232 4.232 11 C 0.089 3.911 12 C -0.512 4.512 13 H 0.104 0.896 14 C -0.178 4.178 15 N -0.435 5.435 16 Si 0.805 3.195 17 H -0.179 1.179 18 H -0.188 1.188 19 H -0.189 1.189 20 C -0.309 4.309 21 C -0.051 4.051 22 N -0.291 5.291 23 C -0.061 4.061 24 N -0.181 5.181 25 C -0.001 4.001 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.094 0.906 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.177 0.823 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.672 13.195 8.718 16.235 hybrid contribution 0.084 -1.301 -1.291 1.835 sum -3.588 11.894 7.427 14.474 Atomic orbital electron populations 1.22596 0.82622 1.03254 1.02930 1.58324 1.10407 1.13627 1.38873 1.23193 1.03280 0.86227 0.98053 1.24031 0.96290 0.97076 0.89054 1.86299 1.66408 1.12841 1.57415 1.19661 1.03011 0.84958 0.93531 1.21001 0.99284 0.91542 0.98121 1.19506 0.99539 0.92634 0.94817 1.19311 0.97425 0.90541 0.92246 1.22251 1.07745 0.92082 1.01092 1.18186 0.88249 0.94515 0.90193 1.19951 1.17001 0.91550 1.22678 0.89562 1.26842 0.92528 1.05260 0.93134 1.69795 1.08591 1.40666 1.24469 0.85103 0.79701 0.75686 0.78983 1.17908 1.18765 1.18887 1.22161 1.13328 0.95855 0.99552 1.22377 0.95646 0.90820 0.96244 1.67365 1.18572 1.40587 1.02575 1.22602 0.95352 0.99832 0.88335 1.67245 1.17763 1.03909 1.29201 1.19814 1.01273 0.90146 0.88893 0.94288 0.92004 0.86764 0.89330 0.83654 0.82947 0.90595 0.83575 0.85649 0.89477 0.86408 0.82268 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.33 127.69 1.19 1.82 16 2 N -0.49 -12.67 4.96 -725.56 -3.60 -16.26 16 3 C 0.02 0.33 5.99 86.48 0.52 0.85 16 4 C 0.01 0.19 7.07 72.12 0.51 0.70 16 5 O -0.32 -9.09 10.41 -94.04 -0.98 -10.07 16 6 C 0.04 1.36 6.47 22.62 0.15 1.51 16 7 C -0.07 -2.90 9.58 22.76 0.22 -2.68 16 8 C -0.06 -2.71 5.89 -19.96 -0.12 -2.83 16 9 C 0.14 6.73 6.73 41.84 0.28 7.02 16 10 C -0.21 -10.98 8.15 23.07 0.19 -10.79 16 11 C 0.10 5.12 5.61 -21.12 -0.12 5.00 16 12 C -0.48 -24.84 9.12 23.52 0.21 -24.62 16 13 H 0.09 4.24 7.90 -2.91 -0.02 4.22 16 14 C 0.04 1.92 5.20 85.29 0.44 2.37 16 15 N -0.81 -40.32 10.91 21.84 0.24 -40.08 16 16 Si 0.99 36.22 29.59 68.60 2.03 38.25 16 17 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 C -0.29 -13.78 9.90 22.86 0.23 -13.55 16 21 C 0.10 4.70 11.15 84.55 0.94 5.65 16 22 N -0.58 -27.79 9.48 -185.39 -1.76 -29.55 16 23 C 0.10 4.19 10.58 84.96 0.90 5.09 16 24 N -0.47 -18.43 10.25 -191.97 -1.97 -20.40 16 25 C 0.23 7.88 5.95 132.91 0.79 8.67 16 26 H 0.04 0.73 6.68 -2.38 -0.02 0.71 16 27 H 0.06 1.52 8.02 -2.39 -0.02 1.51 16 28 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.15 1.22 8.00 -2.38 -0.02 1.20 16 31 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.20 6.69 -2.39 -0.02 1.18 16 33 H 0.15 5.86 7.62 -2.91 -0.02 5.83 16 34 H 0.13 6.63 4.34 -2.91 -0.01 6.62 16 35 H 0.29 13.14 8.29 -92.71 -0.77 12.37 16 36 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 37 H 0.16 5.85 8.06 -2.91 -0.02 5.82 16 38 H 0.16 6.89 6.19 -2.91 -0.02 6.87 16 Total: -1.00 -65.12 317.86 1.40 -63.72 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 1.10 Total: 30.21 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 6.33 Total: -15.81 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -7.08 Total: -106.29 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.98 Total: -10.07 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -65.12 1.40 -63.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239603477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.236 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds