Wall clock time and date at job start Tue Mar 31 2020 07:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46707 * 111.00172 * 2 1 4 4 C 1.53426 * 108.65983 * 285.89875 * 3 2 1 5 5 O 1.43188 * 107.81416 * 296.78232 * 4 3 2 6 6 C 1.36043 * 116.58333 * 44.81731 * 5 4 3 7 7 C 1.38587 * 118.87976 * 165.64609 * 6 5 4 8 8 C 1.39920 * 118.49036 * 180.02562 * 7 6 5 9 9 C 1.48315 * 120.56389 * 179.63349 * 8 7 6 10 10 C 1.40073 * 120.82801 * 359.97438 * 9 8 7 11 11 C 1.38459 * 119.42460 * 180.02562 * 10 9 8 12 12 N 1.31502 * 121.15099 * 0.02562 * 11 10 9 13 13 C 1.33654 * 121.80229 * 359.97438 * 12 11 10 14 14 C 1.41436 * 119.78291 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00105 * 180.02562 * 14 13 12 16 16 C 1.40030 * 119.99593 * 359.97438 * 14 13 12 17 17 N 1.30743 * 120.00149 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99722 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47030 * 90.00733 * 18 16 14 20 20 H 1.48503 * 109.47026 * 209.99980 * 18 16 14 21 21 H 1.48497 * 109.47526 * 330.00242 * 18 16 14 22 22 C 1.39365 * 120.82330 * 179.71933 * 9 8 7 23 23 C 1.39184 * 118.86754 * 359.39610 * 8 7 6 24 24 N 1.31605 * 120.81830 * 0.62115 * 23 8 7 25 25 C 1.32964 * 122.21411 * 359.78013 * 24 23 8 26 26 H 1.08998 * 109.47113 * 60.00412 * 1 2 3 27 27 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47169 * 300.00519 * 1 2 3 29 29 H 1.09000 * 109.60697 * 166.15057 * 3 2 1 30 30 H 1.08999 * 109.74590 * 45.72859 * 3 2 1 31 31 H 1.09000 * 109.79461 * 177.20561 * 4 3 2 32 32 H 1.09005 * 109.79302 * 56.36048 * 4 3 2 33 33 H 1.08002 * 120.75096 * 359.74058 * 7 6 5 34 34 H 1.08002 * 120.28732 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.42831 * 180.02562 * 11 10 9 36 36 H 0.96996 * 120.00269 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.58525 * 359.97438 * 22 9 8 38 38 H 1.08001 * 119.58982 * 180.38038 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3696 0.0000 4 6 1.7990 1.9706 -1.3980 5 8 2.5769 1.1987 -2.3196 6 6 2.5045 -0.1540 -2.1936 7 6 2.9823 -0.9486 -3.2235 8 6 2.9033 -2.3388 -3.0857 9 6 3.3935 -3.2326 -4.1630 10 6 3.9439 -2.7053 -5.3382 11 6 4.3920 -3.5666 -6.3254 12 7 4.3095 -4.8708 -6.1792 13 6 3.7931 -5.4248 -5.0779 14 6 3.7246 -6.8331 -4.9658 15 1 3.3077 -7.2844 -4.0777 16 6 4.1965 -7.6420 -6.0069 17 7 4.7008 -7.0955 -7.0823 18 14 4.1055 -9.5018 -5.8592 19 1 2.8108 -9.9792 -6.4082 20 1 5.2226 -10.1143 -6.6224 21 1 4.2106 -9.8907 -4.4299 22 6 3.3228 -4.6180 -4.0289 23 6 2.3615 -2.8685 -1.9182 24 7 1.9183 -2.0800 -0.9623 25 6 1.9673 -0.7547 -1.0570 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.0566 1.3538 0.2458 30 1 1.4582 1.9701 0.7346 31 1 2.1386 3.0063 -1.4054 32 1 0.7458 1.9248 -1.6753 33 1 3.4019 -0.5049 -4.1143 34 1 4.0172 -1.6364 -5.4735 35 1 4.8167 -3.1601 -7.2315 36 1 5.0274 -7.6558 -7.8036 37 1 2.9093 -5.0632 -3.1360 38 1 2.3006 -3.9400 -1.7969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239613479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:43 Heat of formation + Delta-G solvation = 51.610672 kcal Electronic energy + Delta-G solvation = -22793.166143 eV Core-core repulsion = 19408.249235 eV Total energy + Delta-G solvation = -3384.916908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36346 -38.82892 -37.74348 -36.65833 -33.85333 -32.60363 -31.48277 -30.09123 -29.57498 -28.41579 -26.11934 -25.46785 -24.69862 -23.16886 -21.86256 -21.07362 -20.15167 -18.19928 -17.45806 -17.28139 -16.62998 -15.75296 -15.45639 -15.08164 -14.97123 -14.61924 -14.43159 -14.19965 -13.74037 -13.56580 -13.11087 -12.94390 -12.69844 -12.45515 -12.25815 -12.17018 -11.84855 -11.71903 -11.40541 -11.24871 -11.19617 -10.79502 -10.54765 -10.19706 -9.95769 -9.57323 -9.30165 -8.71207 -8.48211 -7.74115 -7.64927 -7.46374 -6.46386 -4.59486 1.00086 1.45896 2.69877 2.91812 3.06941 3.07702 3.09907 3.15466 3.25899 3.91118 4.05706 4.22550 4.60237 4.62389 4.72170 4.73610 4.95323 4.99507 5.13781 5.18219 5.26203 5.33659 5.47553 5.60084 5.67404 5.84149 5.87649 6.03099 6.25822 6.31230 6.46054 6.59217 6.63857 6.80610 6.84570 7.06470 7.23022 7.26285 7.42374 7.58637 7.88526 8.15956 8.20554 8.57913 8.83370 10.03527 10.25674 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.003272 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.112453 B = 8554.349610 C = 9309.227160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.481 5.481 3 C 0.021 3.979 4 C 0.019 3.981 5 O -0.306 6.306 6 C 0.041 3.959 7 C -0.088 4.088 8 C -0.041 4.041 9 C 0.000 4.000 10 C -0.303 4.303 11 C 0.127 3.873 12 N -0.481 5.481 13 C 0.254 3.746 14 C -0.429 4.429 15 H 0.086 0.914 16 C 0.068 3.932 17 N -0.714 5.714 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.247 4.247 23 C 0.096 3.904 24 N -0.453 5.453 25 C 0.219 3.781 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.274 0.726 37 H 0.106 0.894 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 13.459 9.236 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.199 5.199 3 C -0.107 4.107 4 C -0.059 4.059 5 O -0.219 6.219 6 C -0.009 4.009 7 C -0.115 4.115 8 C -0.044 4.044 9 C -0.007 4.007 10 C -0.326 4.326 11 C -0.039 4.039 12 N -0.193 5.193 13 C 0.129 3.871 14 C -0.460 4.460 15 H 0.104 0.896 16 C -0.157 4.157 17 N -0.335 5.335 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.270 4.270 23 C -0.065 4.065 24 N -0.164 5.164 25 C -0.011 4.011 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.585 12.388 9.470 16.563 hybrid contribution -0.261 0.640 -0.534 0.873 sum -5.846 13.028 8.936 16.845 Atomic orbital electron populations 1.22515 0.84366 1.03815 1.00807 1.58243 1.08984 1.11883 1.40789 1.22973 1.03044 0.87804 0.96919 1.23591 0.96016 0.96118 0.90134 1.86305 1.65577 1.14171 1.55825 1.19721 1.03314 0.83726 0.94106 1.21010 1.00622 0.92067 0.97773 1.19868 0.96739 0.92200 0.95568 1.18360 0.97920 0.92265 0.92181 1.21322 1.15059 0.98572 0.97625 1.22458 0.94519 0.90653 0.96240 1.68737 1.17747 1.09646 1.23218 1.18545 0.88159 0.93705 0.86656 1.19657 1.34066 0.89697 1.02563 0.89632 1.26079 0.93803 1.01114 0.94753 1.70127 1.22980 1.36800 1.03577 0.86314 0.78747 0.82010 0.79716 1.19358 1.20093 1.18442 1.21870 1.11504 0.92003 1.01653 1.22738 0.95546 0.99845 0.88375 1.67171 1.16925 1.02860 1.29451 1.19391 1.02947 0.90386 0.88357 0.95069 0.89902 0.90424 0.88707 0.87921 0.86685 0.91505 0.83700 0.88461 0.86148 0.91507 0.87639 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.32 60.06 0.56 0.88 16 2 N -0.48 -6.17 4.96 -180.69 -0.90 -7.07 16 3 C 0.02 0.20 6.00 -3.71 -0.02 0.17 16 4 C 0.02 0.17 7.07 37.38 0.26 0.44 16 5 O -0.31 -4.27 10.41 -19.88 -0.21 -4.47 16 6 C 0.04 0.67 6.47 -39.05 -0.25 0.41 16 7 C -0.09 -1.53 9.45 -38.82 -0.37 -1.90 16 8 C -0.04 -0.78 5.89 -104.77 -0.62 -1.40 16 9 C 0.00 -0.01 5.91 -104.64 -0.62 -0.63 16 10 C -0.30 -6.58 9.53 -38.81 -0.37 -6.95 16 11 C 0.13 2.99 11.17 -17.61 -0.20 2.80 16 12 N -0.48 -12.99 7.85 -11.21 -0.09 -13.07 16 13 C 0.25 6.75 6.55 -85.02 -0.56 6.19 16 14 C -0.43 -11.16 9.14 -37.69 -0.34 -11.50 16 15 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 16 C 0.07 1.70 5.50 -17.34 -0.10 1.60 16 17 N -0.71 -18.68 11.46 55.55 0.64 -18.05 16 18 Si 0.91 18.21 29.56 -169.99 -5.02 13.18 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.25 -5.82 9.24 -38.33 -0.35 -6.17 16 23 C 0.10 1.71 10.61 -17.30 -0.18 1.53 16 24 N -0.45 -7.96 10.25 -12.03 -0.12 -8.08 16 25 C 0.22 3.51 5.94 -154.36 -0.92 2.59 16 26 H 0.03 0.30 6.68 -51.93 -0.35 -0.05 16 27 H 0.08 0.96 8.02 -51.93 -0.42 0.55 16 28 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.62 8.00 -51.93 -0.42 0.21 16 31 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.58 6.69 -51.93 -0.35 0.24 16 33 H 0.15 2.37 6.40 -52.49 -0.34 2.03 16 34 H 0.10 1.85 6.39 -52.49 -0.34 1.51 16 35 H 0.12 2.52 8.06 -52.48 -0.42 2.09 16 36 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 37 H 0.11 2.24 6.36 -52.49 -0.33 1.91 16 38 H 0.17 2.79 6.30 -52.49 -0.33 2.46 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -30.58 317.01 -9.09 -39.68 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.10 Total: 5.05 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.07 Total: -11.94 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.47 Total: -46.27 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.21 Total: -4.47 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.58 -9.09 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239613479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.287 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds