Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46707 * 111.00172 * 2 1 4 4 C 1.53426 * 108.65983 * 285.89875 * 3 2 1 5 5 O 1.43188 * 107.81416 * 296.78232 * 4 3 2 6 6 C 1.36043 * 116.58333 * 44.81731 * 5 4 3 7 7 C 1.38587 * 118.87976 * 165.64609 * 6 5 4 8 8 C 1.39920 * 118.49036 * 180.02562 * 7 6 5 9 9 C 1.48315 * 120.56389 * 179.63349 * 8 7 6 10 10 C 1.40073 * 120.82801 * 359.97438 * 9 8 7 11 11 C 1.38459 * 119.42460 * 180.02562 * 10 9 8 12 12 N 1.31502 * 121.15099 * 0.02562 * 11 10 9 13 13 C 1.33654 * 121.80229 * 359.97438 * 12 11 10 14 14 C 1.41436 * 119.78291 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00105 * 180.02562 * 14 13 12 16 16 C 1.40030 * 119.99593 * 359.97438 * 14 13 12 17 17 N 1.30743 * 120.00149 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99722 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47030 * 90.00733 * 18 16 14 20 20 H 1.48503 * 109.47026 * 209.99980 * 18 16 14 21 21 H 1.48497 * 109.47526 * 330.00242 * 18 16 14 22 22 C 1.39365 * 120.82330 * 179.71933 * 9 8 7 23 23 C 1.39184 * 118.86754 * 359.39610 * 8 7 6 24 24 N 1.31605 * 120.81830 * 0.62115 * 23 8 7 25 25 C 1.32964 * 122.21411 * 359.78013 * 24 23 8 26 26 H 1.08998 * 109.47113 * 60.00412 * 1 2 3 27 27 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47169 * 300.00519 * 1 2 3 29 29 H 1.09000 * 109.60697 * 166.15057 * 3 2 1 30 30 H 1.08999 * 109.74590 * 45.72859 * 3 2 1 31 31 H 1.09000 * 109.79461 * 177.20561 * 4 3 2 32 32 H 1.09005 * 109.79302 * 56.36048 * 4 3 2 33 33 H 1.08002 * 120.75096 * 359.74058 * 7 6 5 34 34 H 1.08002 * 120.28732 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.42831 * 180.02562 * 11 10 9 36 36 H 0.96996 * 120.00269 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.58525 * 359.97438 * 22 9 8 38 38 H 1.08001 * 119.58982 * 180.38038 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3696 0.0000 4 6 1.7990 1.9706 -1.3980 5 8 2.5769 1.1987 -2.3196 6 6 2.5045 -0.1540 -2.1936 7 6 2.9823 -0.9486 -3.2235 8 6 2.9033 -2.3388 -3.0857 9 6 3.3935 -3.2326 -4.1630 10 6 3.9439 -2.7053 -5.3382 11 6 4.3920 -3.5666 -6.3254 12 7 4.3095 -4.8708 -6.1792 13 6 3.7931 -5.4248 -5.0779 14 6 3.7246 -6.8331 -4.9658 15 1 3.3077 -7.2844 -4.0777 16 6 4.1965 -7.6420 -6.0069 17 7 4.7008 -7.0955 -7.0823 18 14 4.1055 -9.5018 -5.8592 19 1 2.8108 -9.9792 -6.4082 20 1 5.2226 -10.1143 -6.6224 21 1 4.2106 -9.8907 -4.4299 22 6 3.3228 -4.6180 -4.0289 23 6 2.3615 -2.8685 -1.9182 24 7 1.9183 -2.0800 -0.9623 25 6 1.9673 -0.7547 -1.0570 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.0566 1.3538 0.2458 30 1 1.4582 1.9701 0.7346 31 1 2.1386 3.0063 -1.4054 32 1 0.7458 1.9248 -1.6753 33 1 3.4019 -0.5049 -4.1143 34 1 4.0172 -1.6364 -5.4735 35 1 4.8167 -3.1601 -7.2315 36 1 5.0274 -7.6558 -7.8036 37 1 2.9093 -5.0632 -3.1360 38 1 2.3006 -3.9400 -1.7969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239613479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = 32.057000 kcal Electronic energy + Delta-G solvation = -22794.014054 eV Core-core repulsion = 19408.249235 eV Total energy + Delta-G solvation = -3385.764819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48382 -40.34968 -39.21726 -37.69427 -35.62414 -34.18178 -32.73206 -31.85376 -30.83197 -29.55258 -27.77844 -26.67194 -25.88731 -24.51933 -23.33717 -22.76200 -21.44052 -19.59412 -18.84080 -18.36947 -17.96737 -17.37030 -16.76364 -16.33706 -16.13496 -15.95199 -15.77094 -15.45080 -15.20371 -14.88101 -14.45888 -14.39103 -14.23351 -13.92041 -13.58472 -13.17041 -12.99993 -12.90215 -12.87329 -12.68933 -12.54842 -12.23263 -12.16613 -11.70143 -11.63175 -11.12849 -10.83269 -9.90466 -9.82576 -9.60861 -9.51896 -8.87267 -8.29840 -6.52633 -0.39313 0.14471 0.88894 1.26979 1.42514 1.54500 1.57509 2.08082 2.24008 2.25308 2.63887 2.91221 3.24037 3.68072 3.70345 3.76631 3.91684 3.93320 3.94517 4.04315 4.15131 4.27382 4.32007 4.43124 4.58311 4.59637 4.69664 4.78659 4.85191 4.87605 4.88959 5.05914 5.22511 5.24226 5.45086 5.58975 5.61203 5.78276 5.84370 6.08974 6.14379 6.27177 6.71554 6.90275 6.93654 8.17299 8.45229 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.003272 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.112453 B = 8554.349610 C = 9309.227160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.495 5.495 3 C 0.019 3.981 4 C 0.012 3.988 5 O -0.316 6.316 6 C 0.042 3.958 7 C -0.088 4.088 8 C -0.066 4.066 9 C 0.006 3.994 10 C -0.297 4.297 11 C 0.108 3.892 12 N -0.520 5.520 13 C 0.224 3.776 14 C -0.467 4.467 15 H 0.092 0.908 16 C 0.024 3.976 17 N -0.756 5.756 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.254 1.254 22 C -0.266 4.266 23 C 0.093 3.907 24 N -0.470 5.470 25 C 0.228 3.772 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.118 0.882 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 15.669 10.948 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.214 5.214 3 C -0.108 4.108 4 C -0.064 4.064 5 O -0.229 6.229 6 C -0.009 4.009 7 C -0.115 4.115 8 C -0.069 4.069 9 C -0.001 4.001 10 C -0.319 4.319 11 C -0.056 4.056 12 N -0.233 5.233 13 C 0.100 3.900 14 C -0.498 4.498 15 H 0.110 0.890 16 C -0.198 4.198 17 N -0.378 5.378 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.178 1.178 22 C -0.289 4.289 23 C -0.066 4.066 24 N -0.182 5.182 25 C -0.003 4.003 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.595 14.643 11.195 19.577 hybrid contribution -0.030 0.323 -0.886 0.944 sum -6.625 14.967 10.309 19.343 Atomic orbital electron populations 1.22592 0.82594 1.03318 1.02888 1.58322 1.10432 1.13619 1.38980 1.23182 1.03239 0.86299 0.98090 1.24020 0.96310 0.97054 0.88996 1.86298 1.66374 1.12898 1.57334 1.19670 1.02720 0.84960 0.93561 1.21096 1.00274 0.91545 0.98557 1.19647 0.99198 0.92633 0.95401 1.18622 0.96466 0.92143 0.92890 1.21642 1.13476 0.99900 0.96909 1.22899 0.94823 0.90225 0.97639 1.68675 1.19229 1.11288 1.24138 1.18970 0.88877 0.94677 0.87522 1.20028 1.35775 0.90284 1.03698 0.89002 1.27000 0.92766 1.06129 0.93904 1.70227 1.24198 1.38851 1.04520 0.85134 0.78921 0.75329 0.79883 1.18727 1.19351 1.17793 1.22003 1.12285 0.92913 1.01680 1.22735 0.95409 1.00164 0.88333 1.67237 1.17687 1.03881 1.29352 1.19820 1.01384 0.90216 0.88901 0.94230 0.91824 0.87007 0.89378 0.83834 0.83058 0.90505 0.82975 0.85486 0.84107 0.91012 0.86419 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.32 127.69 1.19 1.74 16 2 N -0.49 -11.23 4.96 -725.57 -3.60 -14.83 16 3 C 0.02 0.27 6.00 86.48 0.52 0.79 16 4 C 0.01 0.17 7.07 72.12 0.51 0.68 16 5 O -0.32 -7.88 10.41 -94.03 -0.98 -8.86 16 6 C 0.04 1.26 6.47 22.62 0.15 1.41 16 7 C -0.09 -2.97 9.45 22.76 0.22 -2.75 16 8 C -0.07 -2.50 5.89 -19.96 -0.12 -2.62 16 9 C 0.01 0.26 5.91 -19.88 -0.12 0.14 16 10 C -0.30 -12.94 9.53 22.77 0.22 -12.72 16 11 C 0.11 5.22 11.17 84.79 0.95 6.17 16 12 N -0.52 -29.24 7.85 -189.38 -1.49 -30.73 16 13 C 0.22 12.47 6.55 40.19 0.26 12.73 16 14 C -0.47 -25.33 9.14 23.49 0.21 -25.12 16 15 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 16 C 0.02 1.21 5.50 85.29 0.47 1.68 16 17 N -0.76 -41.07 11.46 21.84 0.25 -40.82 16 18 Si 0.99 38.16 29.56 68.60 2.03 40.19 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 22 C -0.27 -13.02 9.24 23.08 0.21 -12.81 16 23 C 0.09 3.37 10.61 84.95 0.90 4.28 16 24 N -0.47 -16.21 10.25 -191.97 -1.97 -18.18 16 25 C 0.23 6.90 5.94 132.91 0.79 7.69 16 26 H 0.04 0.63 6.68 -2.39 -0.02 0.61 16 27 H 0.06 1.36 8.02 -2.39 -0.02 1.34 16 28 H 0.11 1.17 8.10 -2.39 -0.02 1.15 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.14 0.93 8.00 -2.39 -0.02 0.91 16 31 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.00 6.69 -2.38 -0.02 0.98 16 33 H 0.15 4.75 6.40 -2.91 -0.02 4.73 16 34 H 0.13 4.67 6.39 -2.91 -0.02 4.65 16 35 H 0.14 5.97 8.06 -2.91 -0.02 5.95 16 36 H 0.28 13.68 8.29 -92.71 -0.77 12.91 16 37 H 0.12 5.24 6.36 -2.91 -0.02 5.22 16 38 H 0.17 5.79 6.30 -2.91 -0.02 5.77 16 Total: -1.00 -69.41 317.01 1.71 -67.70 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 1.10 Total: 24.24 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 6.36 Total: -18.71 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -6.80 Total: -104.55 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.98 Total: -8.86 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -69.41 1.71 -67.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239613479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.753 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds