Wall clock time and date at job start Tue Mar 31 2020 07:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46705 * 110.99692 * 2 1 4 4 C 1.53424 * 108.66461 * 285.95482 * 3 2 1 5 5 O 1.43188 * 107.80713 * 296.74185 * 4 3 2 6 6 C 1.36035 * 116.56789 * 44.75139 * 5 4 3 7 7 C 1.38414 * 118.85843 * 165.86895 * 6 5 4 8 8 C 1.40275 * 118.47869 * 180.02562 * 7 6 5 9 9 C 1.47663 * 120.59559 * 179.75126 * 8 7 6 10 10 C 1.39784 * 120.66130 * 309.75116 * 9 8 7 11 11 C 1.38312 * 118.47511 * 180.02562 * 10 9 8 12 12 C 1.39092 * 119.74181 * 0.02562 * 11 10 9 13 13 N 1.31269 * 121.35908 * 359.97438 * 12 11 10 14 14 C 1.33730 * 121.64050 * 359.70374 * 13 12 11 15 15 C 1.40724 * 119.94992 * 180.29006 * 14 13 12 16 16 H 1.08001 * 119.99878 * 180.29375 * 15 14 13 17 17 C 1.40110 * 120.00039 * 0.28636 * 15 14 13 18 18 N 1.30721 * 120.00211 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99949 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46919 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47129 * 120.00076 * 19 17 15 22 22 H 1.48502 * 109.47190 * 240.00601 * 19 17 15 23 23 C 1.39661 * 118.80066 * 359.51211 * 8 7 6 24 24 N 1.31472 * 120.77257 * 0.32753 * 23 8 7 25 25 C 1.33077 * 122.25102 * 0.02562 * 24 23 8 26 26 H 1.08998 * 109.47135 * 59.99949 * 1 2 3 27 27 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46936 * 300.00012 * 1 2 3 29 29 H 1.08999 * 109.60580 * 166.20707 * 3 2 1 30 30 H 1.08999 * 109.74223 * 45.79231 * 3 2 1 31 31 H 1.09001 * 109.79520 * 177.17030 * 4 3 2 32 32 H 1.08995 * 109.79450 * 56.32266 * 4 3 2 33 33 H 1.07999 * 120.75825 * 359.79025 * 7 6 5 34 34 H 1.08003 * 120.75577 * 0.03507 * 10 9 8 35 35 H 1.07988 * 120.12962 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.32130 * 179.97438 * 12 11 10 37 37 H 0.96995 * 120.00344 * 179.97438 * 18 17 15 38 38 H 1.08008 * 119.61235 * 180.35064 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9947 1.3696 0.0000 4 6 1.7976 1.9712 -1.3976 5 8 2.5756 1.2002 -2.3198 6 6 2.5050 -0.1524 -2.1933 7 6 2.9864 -0.9455 -3.2204 8 6 2.9092 -2.3393 -3.0817 9 6 3.4038 -3.2295 -4.1510 10 6 3.0073 -3.0385 -5.4778 11 6 3.4977 -3.8993 -6.4430 12 6 4.3638 -4.9244 -6.0775 13 7 4.7308 -5.0961 -4.8289 14 6 4.2951 -4.2925 -3.8528 15 6 4.7162 -4.5054 -2.5270 16 1 4.3611 -3.8597 -1.7374 17 6 5.5959 -5.5550 -2.2314 18 7 6.0259 -6.3363 -3.1871 19 14 6.1542 -5.8381 -0.4713 20 1 5.5282 -4.8248 0.4155 21 1 5.7454 -7.1974 -0.0349 22 1 7.6324 -5.7173 -0.3954 23 6 2.3608 -2.8697 -1.9119 24 7 1.9179 -2.0802 -0.9585 25 6 1.9668 -0.7538 -1.0549 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 3.0567 1.3538 0.2448 30 1 1.4588 1.9697 0.7354 31 1 2.1366 3.0071 -1.4047 32 1 0.7443 1.9249 -1.6742 33 1 3.4084 -0.5014 -4.1098 34 1 2.3336 -2.2371 -5.7430 35 1 3.2085 -3.7765 -7.4761 36 1 4.7423 -5.5929 -6.8366 37 1 6.6352 -7.0627 -2.9825 38 1 2.3001 -3.9410 -1.7890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239614829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:38 Heat of formation + Delta-G solvation = 32.207894 kcal Electronic energy + Delta-G solvation = -23521.597402 eV Core-core repulsion = 20135.839126 eV Total energy + Delta-G solvation = -3385.758275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.34928 -40.32433 -39.04263 -37.59420 -35.61102 -34.08593 -32.52256 -32.15248 -30.72839 -29.43847 -27.74855 -26.68930 -25.57853 -24.19774 -23.26414 -22.95426 -21.23076 -19.46957 -18.93675 -18.29697 -18.19658 -17.30524 -16.46245 -16.35132 -16.16603 -15.88885 -15.84356 -15.46908 -15.24805 -14.82312 -14.46142 -14.11814 -13.95471 -13.73937 -13.53891 -13.16331 -12.97520 -12.93812 -12.86733 -12.77989 -12.57130 -12.28568 -12.07844 -11.78967 -11.28775 -10.93644 -10.78777 -10.02447 -9.71855 -9.54544 -9.51079 -8.81180 -8.35789 -6.52248 -0.05763 0.30250 0.90328 1.16634 1.37312 1.49397 1.51312 2.18380 2.18653 2.36963 2.74620 2.81311 3.36980 3.77584 3.85577 3.89793 3.97973 3.99259 4.10791 4.15697 4.31504 4.32680 4.45414 4.46896 4.56981 4.66168 4.70848 4.81231 4.85500 4.91136 4.97141 5.15453 5.24566 5.36103 5.48891 5.64650 5.75239 5.85143 5.91552 6.12660 6.25589 6.27301 6.66287 6.92446 7.08573 8.13707 8.36411 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.005397 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.314037 B = 5186.656799 C = 6462.991615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.496 5.496 3 C 0.020 3.980 4 C 0.013 3.987 5 O -0.319 6.319 6 C 0.045 3.955 7 C -0.111 4.111 8 C -0.014 4.014 9 C -0.246 4.246 10 C -0.034 4.034 11 C -0.309 4.309 12 C 0.116 3.884 13 N -0.518 5.518 14 C 0.243 3.757 15 C -0.446 4.446 16 H 0.089 0.911 17 C 0.030 3.970 18 N -0.742 5.742 19 Si 0.971 3.029 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.263 1.263 23 C 0.089 3.911 24 N -0.472 5.472 25 C 0.209 3.791 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.282 0.718 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 13.743 4.748 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.215 5.215 3 C -0.107 4.107 4 C -0.063 4.063 5 O -0.232 6.232 6 C -0.006 4.006 7 C -0.138 4.138 8 C -0.017 4.017 9 C -0.251 4.251 10 C -0.058 4.058 11 C -0.332 4.332 12 C -0.051 4.051 13 N -0.230 5.230 14 C 0.119 3.881 15 C -0.476 4.476 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.363 5.363 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.072 4.072 24 N -0.184 5.184 25 C -0.021 4.021 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.593 12.458 6.066 15.800 hybrid contribution 0.014 0.747 -1.121 1.347 sum -7.578 13.205 4.945 16.008 Atomic orbital electron populations 1.22561 0.82874 1.03088 1.02663 1.58218 1.10316 1.13413 1.39526 1.23139 1.02946 0.86501 0.98148 1.23978 0.96285 0.96949 0.89052 1.86274 1.66550 1.13185 1.57237 1.19651 1.02640 0.84573 0.93712 1.21072 1.02289 0.91698 0.98704 1.19417 0.95300 0.91915 0.95115 1.19349 1.09686 1.02946 0.93143 1.21248 0.96142 0.96978 0.91460 1.21575 1.09040 1.02701 0.99872 1.23112 0.92850 0.94990 0.94173 1.68727 1.26119 1.28288 0.99839 1.18859 0.88666 0.87144 0.93414 1.19996 1.22783 1.11607 0.93231 0.89263 1.26887 0.94953 0.94610 1.02874 1.70188 1.20307 1.10846 1.34933 0.85308 0.78859 0.79445 0.77210 1.18688 1.18374 1.18795 1.22648 0.96077 0.99341 0.89085 1.67142 1.17950 1.03901 1.29366 1.19689 1.03109 0.90078 0.89239 0.94297 0.92055 0.87197 0.89887 0.83919 0.83250 0.90477 0.84099 0.85749 0.85129 0.84107 0.90712 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.32 127.69 1.19 1.90 16 2 N -0.50 -13.56 4.95 -725.48 -3.59 -17.15 16 3 C 0.02 0.37 5.99 86.48 0.52 0.89 16 4 C 0.01 0.24 7.07 72.12 0.51 0.75 16 5 O -0.32 -9.36 10.41 -93.94 -0.98 -10.33 16 6 C 0.04 1.59 6.47 22.63 0.15 1.73 16 7 C -0.11 -4.34 9.60 22.81 0.22 -4.12 16 8 C -0.01 -0.61 5.02 -19.95 -0.10 -0.71 16 9 C -0.25 -11.78 5.56 -19.51 -0.11 -11.89 16 10 C -0.03 -1.45 9.69 22.66 0.22 -1.23 16 11 C -0.31 -12.90 10.10 22.49 0.23 -12.68 16 12 C 0.12 5.42 11.17 84.98 0.95 6.37 16 13 N -0.52 -28.31 7.85 -188.40 -1.48 -29.79 16 14 C 0.24 13.16 6.56 40.37 0.26 13.42 16 15 C -0.45 -23.98 7.98 23.33 0.19 -23.80 16 16 H 0.09 4.70 5.26 -2.91 -0.02 4.68 16 17 C 0.03 1.55 5.50 85.31 0.47 2.02 16 18 N -0.74 -39.41 11.46 21.85 0.25 -39.16 16 19 Si 0.97 39.18 29.56 68.60 2.03 41.21 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C 0.09 3.86 8.76 85.09 0.75 4.60 16 24 N -0.47 -19.31 10.24 -191.60 -1.96 -21.27 16 25 C 0.21 7.46 5.94 133.00 0.79 8.25 16 26 H 0.04 0.74 6.68 -2.39 -0.02 0.72 16 27 H 0.06 1.54 8.02 -2.39 -0.02 1.52 16 28 H 0.11 1.52 8.10 -2.38 -0.02 1.50 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.14 1.46 8.00 -2.39 -0.02 1.44 16 31 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.24 6.68 -2.39 -0.02 1.23 16 33 H 0.14 5.17 8.06 -2.91 -0.02 5.14 16 34 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.13 4.49 8.06 -2.92 -0.02 4.47 16 36 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 37 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 38 H 0.15 6.87 7.26 -2.91 -0.02 6.85 16 Total: -1.00 -67.52 317.33 1.59 -65.94 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 1.09 Total: 25.05 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 6.23 Total: -14.49 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -6.78 Total: -107.37 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.98 Total: -10.33 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -67.52 1.59 -65.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239614829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.144 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds