Wall clock time and date at job start Tue Mar 31 2020 07:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00220 * 2 1 4 4 N 1.34778 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00126 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47463 * 179.97438 * 5 4 2 7 7 C 1.38430 * 119.92775 * 270.02123 * 6 5 4 8 8 C 1.38381 * 120.30198 * 179.97438 * 7 6 5 9 9 C 1.37939 * 120.14920 * 359.72257 * 8 7 6 10 10 C 1.39640 * 119.84689 * 0.52915 * 9 8 7 11 11 C 1.47926 * 120.14732 * 179.74857 * 10 9 8 12 12 C 1.40427 * 120.79330 * 179.44787 * 11 10 9 13 13 N 1.31588 * 119.09771 * 179.75714 * 12 11 10 14 14 C 1.33651 * 120.82736 * 0.52743 * 13 12 11 15 15 C 1.41091 * 119.13245 * 179.70380 * 14 13 12 16 16 H 1.07994 * 120.00299 * 173.64294 * 15 14 13 17 17 C 1.40151 * 119.99843 * 353.63646 * 15 14 13 18 18 N 1.30656 * 120.00142 * 6.34364 * 17 15 14 19 19 Si 1.86804 * 119.99547 * 186.34010 * 17 15 14 20 20 H 1.48496 * 109.47104 * 94.99257 * 19 17 15 21 21 H 1.48498 * 109.46761 * 214.98629 * 19 17 15 22 22 H 1.48492 * 109.47572 * 334.98774 * 19 17 15 23 23 N 1.33643 * 121.73031 * 359.72111 * 14 13 12 24 24 C 1.31587 * 120.83471 * 359.97438 * 23 14 13 25 25 C 1.37895 * 119.92416 * 89.99584 * 6 5 4 26 26 H 1.09004 * 109.47276 * 239.99739 * 1 2 3 27 27 H 1.08997 * 109.47105 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46939 * 120.00191 * 1 2 3 29 29 H 0.96999 * 120.00190 * 359.97438 * 4 2 1 30 30 H 1.09005 * 109.47200 * 59.99472 * 5 4 2 31 31 H 1.09004 * 109.46899 * 299.99995 * 5 4 2 32 32 H 1.08008 * 119.84625 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.92436 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.07558 * 180.28166 * 9 8 7 35 35 H 1.08006 * 120.44990 * 359.97438 * 12 11 10 36 36 H 0.96997 * 120.00017 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.45351 * 179.97438 * 24 23 14 38 38 H 1.08003 * 120.08132 * 0.02649 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 6 4.3776 -3.2396 1.1996 8 6 4.8384 -4.5444 1.2085 9 6 5.0669 -5.2066 0.0202 10 6 4.8427 -4.5535 -1.1935 11 6 5.0908 -5.2555 -2.4718 12 6 4.8589 -4.6157 -3.7001 13 7 5.0955 -5.2699 -4.8171 14 6 5.5405 -6.5299 -4.7917 15 6 5.7763 -7.1997 -6.0109 16 1 6.2319 -8.1788 -6.0098 17 6 5.4193 -6.5943 -7.2235 18 7 4.9835 -5.3626 -7.2354 19 14 5.5665 -7.5486 -8.8226 20 1 4.2570 -8.1658 -9.1531 21 1 5.9683 -6.6257 -9.9144 22 1 6.5912 -8.6126 -8.6717 23 7 5.7675 -7.1721 -3.6419 24 6 5.5590 -6.5794 -2.4858 25 6 4.3779 -3.2363 -1.1952 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6959 -2.0073 -0.0005 30 1 4.0089 -0.6539 0.8905 31 1 4.0095 -0.6528 -0.8895 32 1 4.1960 -2.7271 2.1329 33 1 5.0149 -5.0470 2.1480 34 1 5.4222 -6.2264 0.0286 35 1 4.4947 -3.5993 -3.7277 36 1 4.7368 -4.9436 -8.0746 37 1 5.7441 -7.1044 -1.5603 38 1 4.1987 -2.7269 -2.1306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240351077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:36 Heat of formation + Delta-G solvation = 21.083568 kcal Electronic energy + Delta-G solvation = -22025.708646 eV Core-core repulsion = 18639.467984 eV Total energy + Delta-G solvation = -3386.240662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85326 -39.29411 -38.33669 -35.02606 -34.08314 -32.31368 -32.06396 -31.33124 -29.73733 -29.02764 -26.22904 -25.71999 -23.18361 -22.81999 -21.08210 -20.68781 -20.30320 -18.09643 -17.17162 -16.55546 -16.21476 -15.97275 -15.60326 -15.17409 -14.82047 -14.57147 -14.32107 -13.60424 -13.29282 -13.25126 -13.00500 -12.92241 -12.83472 -12.62439 -12.27528 -12.15502 -12.02741 -11.49069 -11.44139 -11.19010 -10.91910 -10.65865 -10.42627 -10.08959 -9.79876 -9.37393 -9.30780 -9.15881 -9.03772 -8.60189 -7.50326 -7.46902 -6.78549 -4.90422 1.35204 1.60132 2.54765 2.57909 2.84655 2.92817 2.97827 2.98927 3.30862 3.70618 4.16886 4.53325 4.66903 4.80868 5.04408 5.09328 5.17873 5.26618 5.35669 5.50235 5.58303 5.60653 5.72764 5.74572 5.75470 5.86332 5.92397 6.13763 6.19176 6.31162 6.39288 6.61268 6.73168 6.79807 6.80907 6.94154 7.28023 7.32221 7.43175 7.48435 7.93057 8.12276 8.25459 8.33227 8.89996 9.86683 10.05578 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.003237 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.025535 B = 8648.775003 C = 9951.265422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.552 6.552 4 N -0.724 5.724 5 C 0.163 3.837 6 C -0.101 4.101 7 C -0.144 4.144 8 C -0.108 4.108 9 C -0.140 4.140 10 C 0.040 3.960 11 C -0.335 4.335 12 C 0.183 3.817 13 N -0.509 5.509 14 C 0.378 3.622 15 C -0.373 4.373 16 H 0.098 0.902 17 C 0.059 3.941 18 N -0.694 5.694 19 Si 0.924 3.076 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.257 1.257 23 N -0.593 5.593 24 C 0.190 3.810 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.403 0.597 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.280 0.720 37 H 0.132 0.868 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 4.285 10.551 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.430 6.430 4 N -0.376 5.376 5 C 0.040 3.960 6 C -0.101 4.101 7 C -0.163 4.163 8 C -0.126 4.126 9 C -0.158 4.158 10 C 0.038 3.962 11 C -0.345 4.345 12 C 0.006 3.994 13 N -0.224 5.224 14 C 0.146 3.854 15 C -0.405 4.405 16 H 0.116 0.884 17 C -0.170 4.170 18 N -0.314 5.314 19 Si 0.746 3.254 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.180 1.180 23 N -0.311 5.311 24 C 0.014 3.986 25 C -0.145 4.145 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.238 0.762 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.679 4.669 9.312 11.864 hybrid contribution -0.357 -0.295 0.269 0.536 sum -6.036 4.374 9.581 12.139 Atomic orbital electron populations 1.21918 0.91770 1.05387 1.04322 1.20831 0.90617 0.83462 0.75611 1.90720 1.70941 1.31484 1.49890 1.46184 1.07319 1.08861 1.75262 1.20181 0.79541 0.93565 1.02723 1.19588 1.02027 0.94826 0.93675 1.20811 1.03442 0.95325 0.96680 1.20923 0.99448 0.94666 0.97609 1.21212 1.02736 1.00094 0.91788 1.18706 0.92916 0.92239 0.92343 1.19723 1.22871 0.98745 0.93120 1.23055 0.90435 0.98008 0.87943 1.69353 1.17165 1.08958 1.26943 1.19967 0.88252 0.86318 0.90847 1.19557 1.30373 1.02613 0.87985 0.88411 1.26258 0.93922 0.95085 1.01723 1.70112 1.22061 1.10656 1.28535 0.86033 0.79982 0.80112 0.79245 1.19049 1.19688 1.18010 1.68658 1.25263 1.38694 0.98472 1.22692 0.89670 0.90353 0.95875 1.21064 1.01758 0.94647 0.97071 0.89482 0.89082 0.89295 0.76208 0.90980 0.90756 0.86987 0.86677 0.86307 0.85188 0.90818 0.85033 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.32 36.00 0.37 -0.91 16 2 C 0.51 5.95 7.94 -10.99 -0.09 5.86 16 3 O -0.55 -8.93 17.09 5.55 0.09 -8.84 16 4 N -0.72 -7.81 5.55 -61.47 -0.34 -8.15 16 5 C 0.16 2.00 5.79 -5.20 -0.03 1.97 16 6 C -0.10 -1.33 5.24 -104.68 -0.55 -1.88 16 7 C -0.14 -1.79 9.70 -39.46 -0.38 -2.17 16 8 C -0.11 -1.40 10.03 -39.64 -0.40 -1.80 16 9 C -0.14 -2.12 9.45 -39.17 -0.37 -2.49 16 10 C 0.04 0.69 5.88 -104.87 -0.62 0.08 16 11 C -0.33 -7.03 5.94 -104.28 -0.62 -7.65 16 12 C 0.18 4.19 10.70 -16.83 -0.18 4.01 16 13 N -0.51 -13.46 7.86 -12.41 -0.10 -13.56 16 14 C 0.38 10.23 7.35 -158.16 -1.16 9.06 16 15 C -0.37 -9.68 9.35 -37.78 -0.35 -10.03 16 16 H 0.10 2.42 7.86 -52.49 -0.41 2.01 16 17 C 0.06 1.41 5.49 -17.33 -0.10 1.32 16 18 N -0.69 -17.25 11.43 55.56 0.64 -16.61 16 19 Si 0.92 17.36 29.57 -169.99 -5.03 12.34 16 20 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 23 N -0.59 -15.07 10.34 -12.41 -0.13 -15.20 16 24 C 0.19 4.15 10.70 -16.83 -0.18 3.97 16 25 C -0.13 -1.97 9.10 -39.17 -0.36 -2.32 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.40 3.61 8.46 -40.82 -0.35 3.26 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.11 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 35 H 0.13 2.62 6.33 -52.48 -0.33 2.29 16 36 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 37 H 0.13 2.41 6.33 -52.48 -0.33 2.07 16 38 H 0.12 1.85 6.29 -52.48 -0.33 1.52 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -31.08 332.67 -9.03 -40.11 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.17 Total: 7.88 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -5.01 Total: -2.97 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.07 Total: -53.52 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.08 -9.03 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240351077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.190 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds