Wall clock time and date at job start Tue Mar 31 2020 07:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47162 * 2 1 4 4 C 1.46504 * 119.99878 * 86.78915 * 3 2 1 5 5 C 1.50692 * 109.47035 * 95.66554 * 4 3 2 6 6 H 1.08006 * 119.99987 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99981 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99825 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00087 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46977 * 89.99715 * 9 7 5 11 11 H 1.48498 * 109.47131 * 209.99503 * 9 7 5 12 12 H 1.48495 * 109.47338 * 330.00092 * 9 7 5 13 13 C 1.34777 * 120.00037 * 266.79646 * 3 2 1 14 14 O 1.21279 * 120.00070 * 355.95678 * 13 3 2 15 15 C 1.50706 * 120.00164 * 175.96372 * 13 3 2 16 16 H 1.09002 * 109.46818 * 332.00953 * 15 13 3 17 17 C 1.52993 * 109.47415 * 92.00571 * 15 13 3 18 18 C 1.50695 * 109.47167 * 212.01150 * 15 13 3 19 19 C 1.38234 * 119.98198 * 299.72067 * 18 15 13 20 20 C 1.38191 * 120.04825 * 179.77153 * 19 18 15 21 21 C 1.38494 * 120.02134 * 0.50201 * 20 19 18 22 22 F 1.35108 * 120.00942 * 179.76942 * 21 20 19 23 23 C 1.38398 * 119.97890 * 359.75142 * 21 20 19 24 24 C 1.38441 * 119.94759 * 359.97438 * 23 21 20 25 25 F 1.35094 * 120.01177 * 180.02562 * 24 23 21 26 26 H 1.08999 * 109.47098 * 304.82881 * 1 2 3 27 27 H 1.08999 * 109.46720 * 64.82782 * 1 2 3 28 28 H 1.09001 * 109.46768 * 184.82409 * 1 2 3 29 29 H 1.08992 * 109.47389 * 240.00339 * 2 1 3 30 30 H 1.08997 * 109.47318 * 120.00143 * 2 1 3 31 31 H 1.09004 * 109.46789 * 215.66285 * 4 3 2 32 32 H 1.08998 * 109.47128 * 335.66317 * 4 3 2 33 33 H 0.97009 * 119.99792 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47447 * 186.24932 * 17 15 13 35 35 H 1.09004 * 109.47276 * 306.24711 * 17 15 13 36 36 H 1.09007 * 109.47069 * 66.24168 * 17 15 13 37 37 H 1.08002 * 119.97936 * 0.02562 * 19 18 15 38 38 H 1.07998 * 119.98743 * 180.25191 * 20 19 18 39 39 H 1.07998 * 120.02385 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1956 2.0955 1.2668 5 6 3.6313 1.9831 1.7103 6 1 4.3409 1.4341 1.1089 7 6 4.0392 2.5811 2.8837 8 7 5.2922 2.4825 3.2710 9 14 2.8119 3.5300 3.9242 10 1 2.1782 2.6109 4.9035 11 1 3.5151 4.6182 4.6498 12 1 1.7668 4.1150 3.0465 13 6 2.3045 1.9948 -1.1654 14 8 2.2281 1.3811 -2.2086 15 6 2.7196 3.4436 -1.1722 16 1 2.2796 3.9516 -0.3139 17 6 4.2446 3.5377 -1.0937 18 6 2.2406 4.0974 -2.4426 19 6 2.6726 3.6253 -3.6679 20 6 2.2305 4.2208 -4.8339 21 6 1.3622 5.2981 -4.7757 22 9 0.9338 5.8831 -5.9157 23 6 0.9331 5.7750 -3.5493 24 6 1.3722 5.1740 -2.3820 25 9 0.9537 5.6381 -1.1843 26 1 -0.3633 0.5869 0.8436 27 1 -0.3633 0.4371 -0.9301 28 1 -0.3633 -1.0241 0.0864 29 1 1.8934 -0.5137 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 1.9386 3.1460 1.1305 32 1 1.5458 1.6578 2.0246 33 1 5.5791 2.9029 4.0968 34 1 4.5392 4.5815 -0.9868 35 1 4.5999 2.9700 -0.2337 36 1 4.6812 3.1282 -2.0047 37 1 3.3529 2.7877 -3.7141 38 1 2.5655 3.8485 -5.7907 39 1 0.2556 6.6148 -3.5031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319157114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:37 Heat of formation + Delta-G solvation = -105.835802 kcal Electronic energy + Delta-G solvation = -24659.789102 eV Core-core repulsion = 20817.355617 eV Total energy + Delta-G solvation = -3842.433486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.01634 -48.91868 -39.93228 -38.38698 -35.39969 -33.89312 -32.67427 -30.84515 -30.57837 -28.74834 -27.69424 -24.64592 -23.24254 -22.83250 -22.70795 -21.09887 -18.31460 -18.13713 -17.34452 -17.08669 -16.29029 -16.13851 -15.91824 -15.54551 -15.25462 -14.92306 -14.62800 -14.38501 -14.05063 -13.93289 -13.54498 -13.15132 -12.77722 -12.54588 -12.51484 -12.29014 -11.92690 -11.80692 -11.76570 -11.61213 -11.54267 -11.05089 -10.95410 -10.79200 -10.66600 -10.49336 -10.21778 -9.63286 -9.14577 -8.98752 -8.75976 -8.48799 -7.82801 -6.26930 -4.28274 0.97759 1.08507 3.15079 3.22283 3.23488 3.25694 3.39817 3.78987 3.90129 4.22870 4.45267 4.63876 4.73557 4.87533 5.03499 5.15810 5.25072 5.52908 5.54432 5.66409 5.73428 5.75901 5.81599 5.93453 5.99278 6.11996 6.15341 6.24103 6.27411 6.35691 6.41309 6.47421 6.52763 6.69626 6.80858 6.98410 7.28267 7.37820 8.05924 8.33265 8.74774 8.84274 9.32336 10.84926 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.005173 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.166871 B = 5411.222747 C = 6011.121601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.588 5.588 4 C 0.204 3.796 5 C -0.540 4.540 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.531 3.469 14 O -0.566 6.566 15 C -0.069 4.069 16 H 0.108 0.892 17 C -0.142 4.142 18 C -0.108 4.108 19 C -0.024 4.024 20 C -0.168 4.168 21 C 0.120 3.880 22 F -0.137 7.137 23 C -0.198 4.198 24 C 0.132 3.868 25 F -0.128 7.128 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 3.636 -10.550 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.317 5.317 4 C 0.083 3.917 5 C -0.578 4.578 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.090 4.090 16 H 0.126 0.874 17 C -0.199 4.199 18 C -0.109 4.109 19 C -0.042 4.042 20 C -0.187 4.187 21 C 0.100 3.900 22 F -0.116 7.116 23 C -0.218 4.218 24 C 0.113 3.887 25 F -0.107 7.107 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.195 3.398 -10.894 13.491 hybrid contribution -0.789 0.818 0.902 1.451 sum -7.985 4.216 -9.992 13.467 Atomic orbital electron populations 1.22134 0.96839 1.01445 1.01871 1.21300 0.93271 0.83511 1.03020 1.47907 1.63081 1.13561 1.07180 1.19893 0.98245 0.92381 0.81162 1.21318 0.93150 1.35401 1.07921 0.90032 1.24839 0.95027 0.95564 0.97035 1.69883 1.15598 1.43746 1.23262 0.86981 0.81917 0.80465 0.81276 1.19922 1.20799 1.18741 1.20096 0.76167 0.88495 0.83356 1.90572 1.55161 1.67067 1.31921 1.20162 0.99888 0.93679 0.95267 0.87448 1.21886 0.90477 1.03171 1.04344 1.19823 0.98430 0.95989 0.96668 1.20921 0.96821 0.97004 0.89500 1.21203 1.00172 0.96862 1.00425 1.17285 0.97267 0.94140 0.81262 1.91502 1.88449 1.83278 1.48357 1.20874 1.06074 1.04468 0.90375 1.17162 0.96464 0.94687 0.80434 1.91521 1.88417 1.87664 1.43083 0.92650 0.92901 0.92149 0.90443 0.90389 0.94795 0.95041 0.92289 0.92192 0.87664 0.92929 0.83176 0.84222 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.11 1.94 6.17 -4.04 -0.02 1.91 16 3 N -0.59 -11.64 2.47 -175.06 -0.43 -12.07 16 4 C 0.20 4.36 4.04 -5.20 -0.02 4.34 16 5 C -0.54 -13.39 8.03 -34.44 -0.28 -13.67 16 6 H 0.08 2.25 7.48 -52.48 -0.39 1.86 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -24.73 13.96 55.43 0.77 -23.96 16 9 Si 0.87 19.32 27.47 -169.99 -4.67 14.66 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 13 C 0.53 10.46 6.64 -10.98 -0.07 10.39 16 14 O -0.57 -11.69 14.11 5.56 0.08 -11.61 16 15 C -0.07 -1.24 2.30 -92.93 -0.21 -1.45 16 16 H 0.11 2.02 4.89 -51.93 -0.25 1.76 16 17 C -0.14 -2.49 9.06 37.15 0.34 -2.16 16 18 C -0.11 -1.72 4.70 -104.55 -0.49 -2.21 16 19 C -0.02 -0.35 7.89 -39.60 -0.31 -0.67 16 20 C -0.17 -2.11 10.03 -39.50 -0.40 -2.51 16 21 C 0.12 1.54 7.30 -39.43 -0.29 1.25 16 22 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 23 C -0.20 -2.60 10.01 -39.45 -0.39 -2.99 16 24 C 0.13 2.00 7.24 -39.43 -0.29 1.71 16 25 F -0.13 -2.05 16.19 2.25 0.04 -2.01 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.36 7.28 -51.93 -0.38 0.98 16 30 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.03 0.73 5.00 -51.93 -0.26 0.47 16 32 H 0.03 0.66 7.46 -51.93 -0.39 0.27 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 2.19 5.46 -51.93 -0.28 1.91 16 36 H 0.05 0.84 7.17 -51.93 -0.37 0.47 16 37 H 0.15 2.19 6.70 -52.49 -0.35 1.84 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -27.55 327.87 -6.19 -33.74 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.80 Total: 4.12 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.16 Total: -6.13 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.34 Total: -36.03 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.55 -6.19 -33.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319157114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.091 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds