Wall clock time and date at job start Tue Mar 31 2020 07:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99868 * 2 1 4 4 C 1.46903 * 110.99626 * 123.95023 * 2 1 3 5 5 C 1.52999 * 109.47090 * 66.05504 * 4 2 1 6 6 C 1.52999 * 109.46938 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46712 * 179.97438 * 6 5 4 8 8 C 1.46492 * 120.00394 * 90.00166 * 7 6 5 9 9 C 1.50698 * 109.47366 * 95.69578 * 8 7 6 10 10 H 1.07995 * 120.00356 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99685 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00072 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99558 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46665 * 90.00097 * 13 11 9 15 15 H 1.48497 * 109.46855 * 209.99767 * 13 11 9 16 16 H 1.48498 * 109.47133 * 330.00238 * 13 11 9 17 17 C 1.34778 * 119.99766 * 269.99770 * 7 6 5 18 18 O 1.21573 * 120.00144 * 5.27310 * 17 7 6 19 19 C 1.47693 * 120.00142 * 185.27549 * 17 7 6 20 20 C 1.39486 * 122.10657 * 185.82506 * 19 17 7 21 21 C 1.34994 * 111.68596 * 179.78165 * 20 19 17 22 22 S 1.71764 * 105.45226 * 0.42596 * 21 20 19 23 23 N 1.30606 * 122.10090 * 6.10373 * 19 17 7 24 24 H 1.09000 * 109.47607 * 296.04414 * 1 2 3 25 25 H 1.09003 * 109.47200 * 56.05139 * 1 2 3 26 26 H 1.09000 * 109.46817 * 176.04222 * 1 2 3 27 27 H 1.08993 * 109.47243 * 183.94584 * 3 2 1 28 28 H 1.08995 * 109.46842 * 303.95554 * 3 2 1 29 29 H 1.09004 * 109.46557 * 63.95156 * 3 2 1 30 30 H 1.08998 * 109.47248 * 306.04877 * 4 2 1 31 31 H 1.09002 * 109.46518 * 186.05118 * 4 2 1 32 32 H 1.09003 * 109.47296 * 59.99205 * 5 4 2 33 33 H 1.09009 * 109.46519 * 299.99507 * 5 4 2 34 34 H 1.08997 * 109.47071 * 60.00090 * 6 5 4 35 35 H 1.08994 * 109.46867 * 299.99389 * 6 5 4 36 36 H 1.09004 * 109.47475 * 215.70077 * 8 7 6 37 37 H 1.09004 * 109.47231 * 335.69474 * 8 7 6 38 38 H 0.97003 * 119.99927 * 180.02562 * 12 11 9 39 39 H 1.08005 * 124.15366 * 359.97438 * 20 19 17 40 40 H 1.08004 * 127.27649 * 180.17198 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.6315 -2.2426 0.9704 6 6 2.1803 -3.0404 2.1550 7 7 1.8313 -4.4542 1.9951 8 6 2.7388 -5.3566 1.2823 9 6 3.6176 -6.0727 2.2752 10 1 3.5106 -5.8757 3.3316 11 6 4.5584 -6.9795 1.8348 12 7 4.6891 -7.2190 0.5484 13 14 5.6483 -7.8666 3.0656 14 1 4.9913 -9.1296 3.4882 15 1 6.9567 -8.1760 2.4352 16 1 5.8630 -6.9994 4.2518 17 6 0.6753 -4.9247 2.5038 18 8 -0.1218 -4.1594 3.0107 19 6 0.3769 -6.3700 2.4456 20 6 -0.8530 -6.8899 2.8491 21 6 -0.8997 -8.2311 2.7029 22 16 0.6369 -8.6772 2.0782 23 7 1.2499 -7.2423 2.0181 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3434 -0.0707 28 1 1.5897 1.9163 -0.8524 29 1 1.7042 1.8724 0.9233 30 1 1.5609 -0.3872 2.0628 31 1 3.0796 -0.6610 1.1757 32 1 2.0659 -2.6213 0.0452 33 1 0.5471 -2.3475 0.9323 34 1 1.7461 -2.6618 3.0803 35 1 3.2645 -2.9354 2.1926 36 1 2.1573 -6.0866 0.7191 37 1 3.3601 -4.7802 0.5967 38 1 5.3507 -7.8573 0.2386 39 1 -1.6687 -6.2924 3.2286 40 1 -1.7269 -8.8859 2.9342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631156384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:51 Heat of formation + Delta-G solvation = 8.891832 kcal Electronic energy + Delta-G solvation = -22203.574652 eV Core-core repulsion = 18952.249268 eV Total energy + Delta-G solvation = -3251.325384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44413 -39.33027 -38.52657 -36.93116 -34.67277 -33.14265 -32.06836 -29.16473 -28.50527 -28.18456 -26.36053 -24.82466 -23.88613 -21.97849 -21.68887 -20.10507 -19.24611 -18.56120 -17.94611 -17.17998 -16.61346 -16.45185 -16.32882 -16.08349 -15.64423 -15.28879 -14.84085 -14.77358 -14.27739 -14.17647 -14.09577 -13.60597 -13.39848 -13.25775 -12.96663 -12.88100 -12.69128 -12.58791 -12.42861 -12.37088 -12.06536 -11.93195 -11.65740 -11.57077 -11.33543 -10.71403 -10.66010 -10.33076 -9.73699 -9.40056 -9.32260 -8.07112 -6.11850 -0.10281 0.77126 0.92177 1.13499 1.39146 1.41672 1.49493 2.25161 2.32858 2.49777 3.04088 3.26086 3.70867 3.95801 4.05233 4.11111 4.21816 4.39003 4.43086 4.49380 4.56394 4.58714 4.66093 4.73373 4.75856 4.78406 4.96079 4.99221 4.99839 5.01319 5.11230 5.24584 5.42118 5.52591 5.77528 5.91469 6.04208 6.11789 6.22041 6.49683 6.89636 7.21493 7.50908 9.00714 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.005162 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.199488 B = 5423.186486 C = 6989.252788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.113 4.113 6 C 0.121 3.879 7 N -0.583 5.583 8 C 0.260 3.740 9 C -0.493 4.493 10 H 0.036 0.964 11 C 0.031 3.969 12 N -0.919 5.919 13 Si 0.935 3.065 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.277 1.277 17 C 0.580 3.420 18 O -0.582 6.582 19 C 0.008 3.992 20 C -0.151 4.151 21 C -0.268 4.268 22 S 0.438 5.562 23 N -0.464 5.464 24 H 0.028 0.972 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.262 0.738 39 H 0.173 0.827 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 4.896 0.928 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.002 4.002 7 N -0.312 5.312 8 C 0.139 3.861 9 C -0.532 4.532 10 H 0.054 0.946 11 C -0.168 4.168 12 N -0.559 5.559 13 Si 0.762 3.238 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.202 1.202 17 C 0.365 3.635 18 O -0.464 6.464 19 C -0.165 4.165 20 C -0.184 4.184 21 C -0.416 4.416 22 S 0.592 5.408 23 N -0.297 5.297 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.190 0.810 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.586 3.850 -0.130 8.508 hybrid contribution -0.721 1.024 1.877 2.256 sum -8.307 4.874 1.747 9.788 Atomic orbital electron populations 1.22424 0.87021 1.02036 1.01008 1.61952 1.08685 1.15026 1.43299 1.22427 1.01116 0.87582 1.01127 1.21956 1.00645 0.92051 0.91510 1.21748 1.00539 0.94893 0.98016 1.21413 1.00569 0.79589 0.98653 1.48171 1.19409 1.10452 1.53143 1.19305 0.87732 0.87568 0.91521 1.21202 1.16830 1.22904 0.92305 0.94558 1.25309 0.98171 0.97101 0.96214 1.70005 1.35902 1.35802 1.14211 0.85916 0.78877 0.79375 0.79681 1.19973 1.20668 1.20176 1.17632 0.81555 0.86146 0.78163 1.90643 1.48678 1.58055 1.49033 1.21305 0.92695 0.95168 1.07326 1.21427 0.97480 0.95559 1.03887 1.27496 1.07555 0.99010 1.07581 1.80663 0.99480 1.11297 1.49365 1.73567 1.30659 1.05013 1.20489 0.95355 0.89993 0.92488 0.90903 0.90222 0.95179 0.94303 0.89832 0.92442 0.92885 0.90989 0.90066 0.93729 0.96981 0.92861 0.80950 0.76125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.32 127.69 1.19 1.73 16 2 N -0.57 -14.35 5.02 -948.83 -4.76 -19.11 16 3 C 0.03 0.49 9.57 127.69 1.22 1.71 16 4 C 0.07 1.82 4.96 86.30 0.43 2.24 16 5 C -0.11 -3.79 5.46 30.59 0.17 -3.62 16 6 C 0.12 4.60 5.34 86.38 0.46 5.06 16 7 N -0.58 -26.32 2.47 -829.76 -2.05 -28.37 16 8 C 0.26 13.21 4.75 85.63 0.41 13.62 16 9 C -0.49 -26.50 7.49 25.60 0.19 -26.31 16 10 H 0.04 2.03 7.81 -2.91 -0.02 2.01 16 11 C 0.03 1.69 5.46 84.66 0.46 2.15 16 12 N -0.92 -51.64 13.29 21.45 0.28 -51.35 16 13 Si 0.94 42.94 29.54 68.60 2.03 44.96 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 C 0.58 26.20 7.60 86.74 0.66 26.85 16 18 O -0.58 -26.76 16.30 -3.95 -0.06 -26.82 16 19 C 0.01 0.33 6.41 42.13 0.27 0.60 16 20 C -0.15 -4.92 9.98 21.82 0.22 -4.70 16 21 C -0.27 -6.89 11.41 67.07 0.76 -6.12 16 22 S 0.44 14.15 23.20 -56.49 -1.31 12.84 16 23 N -0.46 -20.13 6.16 -75.29 -0.46 -20.59 16 24 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 26 H 0.06 1.50 6.47 -2.39 -0.02 1.48 16 27 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 28 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.08 2.13 8.06 -2.39 -0.02 2.11 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.90 6.55 -2.38 -0.02 1.88 16 34 H 0.07 2.69 7.50 -2.39 -0.02 2.68 16 35 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 36 H 0.05 2.43 5.86 -2.38 -0.01 2.42 16 37 H 0.01 0.66 8.03 -2.38 -0.02 0.64 16 38 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.17 5.10 8.00 -2.91 -0.02 5.08 16 40 H 0.22 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -65.37 344.69 1.13 -64.24 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.02 Total: 11.01 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.44 Total: 13.20 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.99 Total: -119.44 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 14.15 SS G_CDS: -1.31 Total: 12.84 kcal Total: -65.37 1.13 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631156384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.136 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds