Wall clock time and date at job start Tue Mar 31 2020 08:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37864 * 120.02491 * 2 1 4 4 C 1.39008 * 120.05086 * 179.72340 * 3 2 1 5 5 N 1.39578 * 119.94736 * 180.27196 * 4 3 2 6 6 C 1.46504 * 119.99760 * 174.47439 * 5 4 3 7 7 C 1.46504 * 120.00270 * 354.47435 * 5 4 3 8 8 C 1.39044 * 120.10034 * 0.50344 * 4 3 2 9 9 C 1.37824 * 120.05256 * 359.49255 * 8 4 3 10 10 C 1.39431 * 120.02690 * 179.97438 * 2 1 3 11 11 C 1.48251 * 120.05134 * 0.04825 * 10 2 1 12 12 C 1.39306 * 120.16283 * 244.69564 * 11 10 2 13 13 C 1.38018 * 119.94165 * 179.76745 * 12 11 10 14 14 C 1.38441 * 120.26971 * 0.51170 * 13 12 11 15 15 C 1.38125 * 120.33193 * 359.74399 * 14 13 12 16 16 C 1.38746 * 120.04768 * 359.97438 * 15 14 13 17 17 O 1.35675 * 120.13150 * 179.97438 * 16 15 14 18 18 C 1.34811 * 117.00452 * 5.54722 * 17 16 15 19 19 H 1.08010 * 119.99534 * 354.94178 * 18 17 16 20 20 C 1.38631 * 120.00387 * 174.93436 * 18 17 16 21 21 N 1.31563 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00066 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47006 * 60.00492 * 22 20 18 24 24 H 1.48505 * 109.47288 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47558 * 300.00404 * 22 20 18 26 26 H 1.08997 * 109.47327 * 270.02699 * 1 2 3 27 27 H 1.08998 * 109.46926 * 30.02977 * 1 2 3 28 28 H 1.09004 * 109.47156 * 150.02772 * 1 2 3 29 29 H 1.07998 * 119.97594 * 359.97029 * 3 2 1 30 30 H 1.09001 * 109.46849 * 5.06027 * 6 5 4 31 31 H 1.09001 * 109.46726 * 125.05741 * 6 5 4 32 32 H 1.08995 * 109.47182 * 245.05776 * 6 5 4 33 33 H 1.08999 * 109.46654 * 89.99948 * 7 5 4 34 34 H 1.08996 * 109.46849 * 210.00147 * 7 5 4 35 35 H 1.08994 * 109.46723 * 330.00382 * 7 5 4 36 36 H 1.08001 * 119.97306 * 179.76456 * 8 4 3 37 37 H 1.07997 * 120.02627 * 180.22938 * 9 8 4 38 38 H 1.07997 * 120.02400 * 0.02562 * 12 11 10 39 39 H 1.07995 * 119.86395 * 180.27853 * 13 12 11 40 40 H 1.08000 * 119.83489 * 179.76398 * 14 13 12 41 41 H 1.07997 * 119.97375 * 180.02562 * 15 14 13 42 42 H 0.97001 * 119.99611 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1936 0.0000 4 6 3.5869 1.1943 0.0058 5 7 4.2831 2.4040 0.0115 6 6 5.7426 2.4086 0.1398 7 6 3.5546 3.6691 -0.1107 8 6 4.2848 -0.0083 0.0011 9 6 3.5995 -1.2041 0.0011 10 6 2.2048 -1.2072 0.0005 11 6 1.4653 -2.4921 0.0000 12 6 1.5615 -3.3555 1.0890 13 6 0.8673 -4.5484 1.0858 14 6 0.0829 -4.8964 -0.0006 15 6 -0.0164 -4.0512 -1.0885 16 6 0.6711 -2.8460 -1.0971 17 8 0.5751 -2.0148 -2.1650 18 6 -0.2934 -2.3628 -3.1356 19 1 -0.8136 -3.3078 -3.0812 20 6 -0.5189 -1.5078 -4.2033 21 7 0.1151 -0.3569 -4.2696 22 14 -1.7219 -1.9904 -5.5484 23 1 -3.0699 -2.1908 -4.9583 24 1 -1.7827 -0.9127 -6.5682 25 1 -1.2692 -3.2518 -6.1882 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3634 -0.8903 -0.5134 29 1 1.6569 2.1289 -0.0005 30 1 6.1115 1.3830 0.1283 31 1 6.1786 2.9610 -0.6925 32 1 6.0232 2.8853 1.0790 33 1 3.2839 4.0298 0.8816 34 1 4.1871 4.4063 -0.6053 35 1 2.6507 3.5124 -0.6994 36 1 5.3649 -0.0054 0.0017 37 1 4.1420 -2.1379 0.0012 38 1 2.1755 -3.0897 1.9368 39 1 0.9392 -5.2147 1.9326 40 1 -0.4543 -5.8333 0.0027 41 1 -0.6303 -4.3282 -1.9328 42 1 -0.0425 0.2411 -5.0169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:00 Heat of formation + Delta-G solvation = 37.040596 kcal Electronic energy + Delta-G solvation = -23818.923862 eV Core-core repulsion = 20536.915491 eV Total energy + Delta-G solvation = -3282.008370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60397 -38.58869 -36.42516 -35.79832 -32.29028 -31.91009 -31.25021 -29.07588 -28.53175 -27.89665 -25.83041 -25.26109 -24.39656 -21.87588 -21.17335 -20.90208 -19.37013 -17.87457 -17.11281 -16.56096 -15.55371 -15.21984 -14.88376 -14.54399 -14.45822 -13.96726 -13.95525 -13.56409 -13.22777 -13.12875 -12.88547 -12.73500 -12.47216 -12.43534 -11.87144 -11.68458 -11.60808 -11.56147 -11.37541 -11.27217 -11.02393 -10.78049 -10.69731 -10.45987 -10.33198 -10.21802 -9.30677 -9.17802 -8.78316 -8.07002 -7.99110 -7.20752 -6.64170 -6.39035 -3.97805 1.96765 2.10956 2.39808 2.48129 3.15478 3.16110 3.18429 3.41217 3.99538 4.43492 4.64936 5.07758 5.14431 5.21041 5.30205 5.39001 5.49333 5.53779 5.55103 5.69140 5.73517 5.77815 5.82242 5.89455 5.96377 6.08784 6.15883 6.18400 6.36596 6.39387 6.53321 6.56690 6.75349 6.78870 6.80857 7.01667 7.11991 7.18139 7.30428 7.37737 7.43267 7.49799 7.57348 7.59555 7.88245 7.96371 8.04262 9.05417 9.77051 10.77136 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.005787 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.568926 B = 4837.125327 C = 6550.594715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.001 4.001 3 C -0.193 4.193 4 C 0.206 3.794 5 N -0.644 5.644 6 C 0.094 3.906 7 C 0.098 3.902 8 C -0.209 4.209 9 C -0.063 4.063 10 C -0.067 4.067 11 C -0.117 4.117 12 C -0.066 4.066 13 C -0.215 4.215 14 C -0.075 4.075 15 C -0.237 4.237 16 C 0.162 3.838 17 O -0.161 6.161 18 C -0.395 4.395 19 H 0.089 0.911 20 C 0.043 3.957 21 N -0.854 5.854 22 Si 0.935 3.065 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.271 1.271 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 3.103 8.527 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.001 4.001 3 C -0.215 4.215 4 C 0.106 3.894 5 N -0.358 5.358 6 C -0.049 4.049 7 C -0.045 4.045 8 C -0.231 4.231 9 C -0.082 4.082 10 C -0.069 4.069 11 C -0.118 4.118 12 C -0.084 4.084 13 C -0.234 4.234 14 C -0.093 4.093 15 C -0.256 4.256 16 C 0.107 3.893 17 O -0.063 6.063 18 C -0.471 4.471 19 H 0.107 0.893 20 C -0.162 4.162 21 N -0.488 5.488 22 Si 0.760 3.240 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.196 1.196 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.781 3.705 8.284 10.760 hybrid contribution -0.575 -0.282 -0.860 1.072 sum 5.207 3.422 7.424 9.692 Atomic orbital electron populations 1.20838 0.91375 1.04321 1.00515 1.19637 0.95723 0.91409 0.93367 1.20366 0.91655 0.97833 1.11612 1.17729 0.91101 0.85211 0.95319 1.46124 1.05096 1.03364 1.81211 1.21595 0.80469 1.02851 0.99995 1.21519 0.97362 0.85164 1.00478 1.20427 0.98696 0.91155 1.12800 1.20846 0.93222 0.96748 0.97350 1.18231 0.92100 0.91603 1.04936 1.17799 1.04024 0.95739 0.94223 1.20710 0.98146 0.93353 0.96212 1.20501 1.04520 0.98710 0.99673 1.20769 0.97295 0.97926 0.93351 1.21108 1.07183 0.96427 1.00910 1.19335 0.92732 0.89612 0.87597 1.84042 1.54647 1.43243 1.24397 1.21255 1.20767 1.04883 1.00222 0.89348 1.25210 0.97943 0.95004 0.98002 1.70061 1.39493 1.08552 1.30676 0.85874 0.79980 0.78342 0.79786 1.19569 1.20394 1.19623 0.92556 0.92208 0.89519 0.86691 0.90442 0.93251 0.93707 0.94028 0.92190 0.91213 0.86661 0.86681 0.87126 0.87739 0.87705 0.85594 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.44 36.01 0.34 -2.01 16 2 C 0.00 -0.01 5.68 -104.31 -0.59 -0.61 16 3 C -0.19 -3.67 8.80 -39.43 -0.35 -4.02 16 4 C 0.21 3.63 6.54 -83.75 -0.55 3.08 16 5 N -0.64 -9.35 3.41 -187.51 -0.64 -9.99 16 6 C 0.09 1.06 10.62 59.85 0.64 1.69 16 7 C 0.10 1.19 10.10 59.85 0.60 1.80 16 8 C -0.21 -3.63 9.30 -39.43 -0.37 -4.00 16 9 C -0.06 -1.20 9.72 -39.27 -0.38 -1.58 16 10 C -0.07 -1.42 4.95 -104.88 -0.52 -1.94 16 11 C -0.12 -2.51 4.63 -104.73 -0.48 -3.00 16 12 C -0.07 -1.23 9.73 -39.27 -0.38 -1.62 16 13 C -0.22 -3.81 10.03 -39.59 -0.40 -4.21 16 14 C -0.08 -1.40 10.03 -39.55 -0.40 -1.80 16 15 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 16 C 0.16 3.88 5.24 -38.74 -0.20 3.68 16 17 O -0.16 -4.44 7.70 0.33 0.00 -4.43 16 18 C -0.39 -10.82 9.49 30.88 0.29 -10.53 16 19 H 0.09 2.26 5.21 -52.48 -0.27 1.99 16 20 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 21 N -0.85 -24.62 13.67 55.48 0.76 -23.86 16 22 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.09 2.04 4.66 -51.93 -0.24 1.80 16 29 H 0.12 1.99 6.28 -52.49 -0.33 1.66 16 30 H 0.08 0.85 5.30 -51.93 -0.28 0.58 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.07 0.92 6.43 -51.93 -0.33 0.58 16 36 H 0.12 1.68 5.72 -52.49 -0.30 1.38 16 37 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -30.91 343.10 -8.34 -39.25 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.41 Total: 7.95 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -3.20 Total: -29.50 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.12 Total: -33.85 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.43 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.91 -8.34 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.290 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds