Wall clock time and date at job start Tue Mar 31 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31262 * 119.79841 * 2 1 4 4 C 1.33022 * 121.72429 * 179.97438 * 3 2 1 5 5 C 1.47971 * 119.44856 * 180.02562 * 4 3 2 6 6 C 1.39655 * 120.11698 * 185.02518 * 5 4 3 7 7 C 1.37939 * 119.96766 * 180.02562 * 6 5 4 8 8 C 1.38328 * 120.20140 * 359.97289 * 7 6 5 9 9 C 1.38855 * 120.23710 * 0.02562 * 8 7 6 10 10 O 1.35904 * 119.98233 * 179.97438 * 9 8 7 11 11 C 1.42898 * 116.99989 * 354.60948 * 10 9 8 12 12 C 1.52994 * 109.47116 * 85.78484 * 11 10 9 13 13 C 1.52997 * 109.46946 * 205.78259 * 11 10 9 14 14 C 1.38463 * 120.03109 * 359.72262 * 9 8 7 15 15 C 1.39887 * 121.09909 * 0.04717 * 4 3 2 16 16 C 1.36608 * 119.47213 * 359.97438 * 15 4 3 17 17 C 1.40951 * 119.79667 * 180.02562 * 2 1 3 18 18 C 1.41044 * 120.55481 * 0.28068 * 17 2 1 19 19 H 1.08000 * 120.00139 * 332.37254 * 18 17 2 20 20 C 1.40027 * 120.00031 * 152.37376 * 18 17 2 21 21 N 1.30784 * 120.00294 * 347.52042 * 20 18 17 22 22 Si 1.86805 * 119.99964 * 167.51582 * 20 18 17 23 23 H 1.48503 * 109.47025 * 90.00283 * 22 20 18 24 24 H 1.48499 * 109.47290 * 209.99728 * 22 20 18 25 25 H 1.48500 * 109.47095 * 330.00281 * 22 20 18 26 26 H 1.09010 * 109.47322 * 269.97799 * 1 2 3 27 27 H 1.08999 * 109.47323 * 29.97635 * 1 2 3 28 28 H 1.08996 * 109.47236 * 149.97973 * 1 2 3 29 29 H 1.08002 * 120.01863 * 359.97341 * 6 5 4 30 30 H 1.07994 * 119.90297 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.87948 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47394 * 325.78284 * 11 10 9 33 33 H 1.09000 * 109.47067 * 180.02562 * 12 11 10 34 34 H 1.08996 * 109.47212 * 299.99825 * 12 11 10 35 35 H 1.09001 * 109.47153 * 59.99652 * 12 11 10 36 36 H 1.09000 * 109.47170 * 60.00120 * 13 11 10 37 37 H 1.09000 * 109.46878 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.47815 * 300.00051 * 13 11 10 39 39 H 1.08000 * 120.10376 * 180.27460 * 14 9 8 40 40 H 1.08001 * 120.26425 * 179.97438 * 15 4 3 41 41 H 1.07999 * 120.79593 * 179.97438 * 16 15 4 42 42 H 0.96999 * 120.00722 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4888 1.1838 0.0005 5 6 4.1725 2.4960 0.0011 6 6 5.5636 2.5614 -0.1042 7 6 6.1979 3.7863 -0.1029 8 6 5.4602 4.9518 0.0020 9 6 4.0767 4.8966 0.1070 10 8 3.3571 6.0449 0.2103 11 6 4.0937 7.2641 0.3236 12 6 4.4509 7.7758 -1.0733 13 6 3.2420 8.3091 1.0471 14 6 3.4296 3.6725 0.1014 15 6 4.2512 0.0109 0.0001 16 6 3.6203 -1.2008 -0.0003 17 6 2.2074 -1.2232 -0.0005 18 6 1.5097 -2.4489 -0.0070 19 1 0.5206 -2.5096 0.4223 20 6 2.0995 -3.5873 -0.5701 21 7 3.1778 -3.4715 -1.3011 22 14 1.3462 -5.2714 -0.2772 23 1 0.3544 -5.5623 -1.3435 24 1 2.4146 -6.3025 -0.3005 25 1 0.6706 -5.2883 1.0451 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 6.1425 1.6533 -0.1858 30 1 7.2736 3.8356 -0.1839 31 1 5.9621 5.9080 0.0021 32 1 5.0078 7.0852 0.8897 33 1 5.0131 8.7056 -0.9869 34 1 5.0576 7.0314 -1.5888 35 1 3.5368 7.9547 -1.6395 36 1 2.9875 7.9446 2.0423 37 1 3.8041 9.2390 1.1339 38 1 2.3279 8.4881 0.4811 39 1 2.3533 3.6284 0.1786 40 1 5.3299 0.0629 0.0001 41 1 4.1878 -2.1196 -0.0011 42 1 3.5866 -4.2600 -1.6909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082481663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:51 Heat of formation + Delta-G solvation = -5.353907 kcal Electronic energy + Delta-G solvation = -22765.648318 eV Core-core repulsion = 19481.801584 eV Total energy + Delta-G solvation = -3283.846734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.93668 -38.69297 -37.08819 -34.28715 -33.20828 -32.17855 -31.04982 -29.66317 -29.21406 -27.39290 -26.95678 -25.19668 -23.06525 -22.21250 -21.56450 -20.25174 -19.76904 -17.84397 -17.43077 -15.89950 -15.80456 -15.35368 -15.19064 -14.73643 -14.60399 -13.82017 -13.57113 -13.39948 -13.23457 -13.11172 -12.73844 -12.62243 -12.41248 -12.21591 -11.91205 -11.78913 -11.71508 -11.63127 -11.33372 -11.22595 -11.06700 -10.93902 -10.92105 -10.70387 -10.51729 -10.30544 -9.82654 -9.55593 -8.64449 -8.27586 -8.08649 -7.81552 -7.23390 -6.96501 -4.57874 1.53445 1.96768 2.65195 2.90957 2.93792 2.98069 3.14635 3.39916 3.72953 4.21725 4.63740 4.70507 4.83683 4.97969 5.20834 5.28223 5.37966 5.40041 5.54278 5.55394 5.60041 5.65660 5.78108 5.92951 6.01612 6.05333 6.09257 6.11600 6.29224 6.39949 6.57826 6.62734 6.71808 6.73861 6.82409 6.85218 6.92723 7.02234 7.17629 7.25083 7.34506 7.66085 7.76992 7.83370 7.88945 8.29449 8.50274 8.59946 9.55762 9.89305 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.003074 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.291203 B = 9107.533288 C = 9797.105598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.011 3.989 3 N -0.444 5.444 4 C -0.003 4.003 5 C 0.058 3.942 6 C -0.169 4.169 7 C -0.081 4.081 8 C -0.240 4.240 9 C 0.127 3.873 10 O -0.313 6.313 11 C 0.077 3.923 12 C -0.179 4.179 13 C -0.148 4.148 14 C -0.145 4.145 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.075 3.925 18 C -0.430 4.430 19 H 0.089 0.911 20 C 0.070 3.930 21 N -0.781 5.781 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.258 1.258 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.128 0.872 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 11.974 1.819 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 N -0.152 5.152 4 C -0.137 4.137 5 C 0.057 3.943 6 C -0.188 4.188 7 C -0.099 4.099 8 C -0.259 4.259 9 C 0.083 3.917 10 O -0.228 6.228 11 C 0.020 3.980 12 C -0.236 4.236 13 C -0.205 4.205 14 C -0.165 4.165 15 C -0.143 4.143 16 C -0.165 4.165 17 C 0.070 3.930 18 C -0.459 4.459 19 H 0.107 0.893 20 C -0.150 4.150 21 N -0.404 5.404 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.181 1.181 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.153 0.847 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.161 12.631 1.667 13.127 hybrid contribution 0.659 -1.554 -0.075 1.690 sum 3.821 11.077 1.592 11.825 Atomic orbital electron populations 1.20269 0.90953 1.01318 1.00441 1.21042 0.95202 0.87967 1.09273 1.66750 1.08626 1.30418 1.09436 1.18697 0.89099 0.90473 1.15418 1.18450 0.91803 0.91382 0.92672 1.21104 0.93885 0.97564 1.06242 1.20672 0.98881 0.91887 0.98441 1.21051 0.92922 0.98913 1.12983 1.18891 0.90063 0.85866 0.96881 1.86116 1.35586 1.12824 1.88241 1.22335 0.95463 0.83548 0.96635 1.22368 1.02576 1.01569 0.97115 1.21846 1.00593 0.97192 1.00898 1.20505 1.01037 0.88353 1.06561 1.21305 0.98678 0.93377 1.00979 1.21340 0.94723 0.96640 1.03791 1.18448 0.92569 0.93190 0.88822 1.19690 1.02573 0.92441 1.31167 0.89332 1.26094 0.94316 1.01895 0.92692 1.69758 1.16804 1.32641 1.21225 0.86165 0.79632 0.79921 0.80329 1.19109 1.19863 1.18133 0.93255 0.93081 0.91423 0.86060 0.86596 0.86371 0.91061 0.91453 0.91703 0.91566 0.91716 0.90899 0.91556 0.84708 0.87949 0.85418 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 9.58 36.01 0.35 -1.15 16 2 C 0.01 0.28 6.86 -81.81 -0.56 -0.28 16 3 N -0.44 -11.05 9.31 -5.39 -0.05 -11.10 16 4 C 0.00 -0.08 6.73 -82.75 -0.56 -0.63 16 5 C 0.06 1.22 5.87 -104.91 -0.62 0.60 16 6 C -0.17 -3.05 9.41 -39.16 -0.37 -3.42 16 7 C -0.08 -1.25 10.03 -39.66 -0.40 -1.65 16 8 C -0.24 -3.67 8.28 -39.32 -0.33 -4.00 16 9 C 0.13 2.23 6.60 -39.27 -0.26 1.97 16 10 O -0.31 -5.00 9.79 -19.44 -0.19 -5.19 16 11 C 0.08 0.88 2.84 -26.74 -0.08 0.81 16 12 C -0.18 -1.80 9.19 37.15 0.34 -1.45 16 13 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 14 C -0.15 -2.93 9.51 -39.03 -0.37 -3.30 16 15 C -0.12 -2.88 9.37 -39.55 -0.37 -3.25 16 16 C -0.14 -3.52 8.71 -39.00 -0.34 -3.86 16 17 C 0.07 1.91 5.57 -106.64 -0.59 1.32 16 18 C -0.43 -10.50 8.09 -37.85 -0.31 -10.81 16 19 H 0.09 2.03 6.93 -52.49 -0.36 1.67 16 20 C 0.07 1.62 5.25 -17.33 -0.09 1.53 16 21 N -0.78 -18.78 10.87 55.55 0.60 -18.18 16 22 Si 0.92 17.21 29.58 -169.99 -5.03 12.18 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 26 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.36 6.79 -51.93 -0.35 1.00 16 29 H 0.12 2.05 6.18 -52.49 -0.32 1.72 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.48 5.44 -52.49 -0.29 1.20 16 32 H 0.07 0.78 6.25 -51.93 -0.32 0.45 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.71 7.01 -51.93 -0.36 0.35 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.14 2.87 7.53 -52.49 -0.40 2.48 16 40 H 0.10 2.10 6.18 -52.49 -0.32 1.78 16 41 H 0.13 3.22 6.28 -52.49 -0.33 2.89 16 42 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -27.71 344.27 -9.25 -36.96 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.58 Total: 8.73 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -4.19 Total: -28.59 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.55 Total: -29.28 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.19 Total: -5.19 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.71 -9.25 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082481663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.602 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds