Wall clock time and date at job start Tue Mar 31 2020 07:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47560 * 324.99982 * 13 12 10 15 15 C 1.50707 * 109.47144 * 205.00123 * 13 12 10 16 16 H 1.07998 * 119.99732 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00198 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99920 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99939 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47348 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46794 * 119.99864 * 19 17 15 22 22 H 1.48502 * 109.47110 * 239.99467 * 19 17 15 23 23 C 1.53003 * 109.47227 * 85.00334 * 13 12 10 24 24 C 1.52996 * 109.46801 * 295.00151 * 23 13 12 25 25 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 26 26 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 27 27 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 28 28 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 30 30 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 31 31 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 32 32 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 33 33 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 34 34 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 35 35 H 0.96996 * 119.99778 * 0.02562 * 12 10 9 36 36 H 0.97004 * 120.00072 * 180.02562 * 18 17 15 37 37 H 1.09008 * 109.46677 * 54.99716 * 23 13 12 38 38 H 1.08997 * 109.47249 * 174.99435 * 23 13 12 39 39 H 1.09000 * 109.46984 * 299.99001 * 24 23 13 40 40 H 1.08997 * 109.47804 * 59.99624 * 24 23 13 41 41 H 1.09002 * 109.47010 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.1723 9.2277 -3.5870 14 1 -1.0155 8.5455 -3.6941 15 6 -0.0394 10.0620 -4.8350 16 1 0.8693 10.0218 -5.4172 17 6 -1.0780 10.8766 -5.2335 18 7 -2.1848 10.9252 -4.5247 19 14 -0.9135 11.9102 -6.7808 20 1 0.4191 11.6766 -7.3928 21 1 -1.9758 11.5287 -7.7460 22 1 -1.0532 13.3472 -6.4334 23 6 -0.4069 10.1435 -2.3839 24 6 -0.6656 9.2933 -1.1386 25 7 2.3032 2.1694 -1.0841 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8763 5.0936 -0.8849 32 1 3.5563 4.1849 -2.3816 33 1 3.0147 7.1283 -1.9351 34 1 2.6951 6.2199 -3.4322 35 1 1.8952 8.7735 -3.7524 36 1 -2.9156 11.4981 -4.8053 37 1 0.4742 10.7649 -2.2231 38 1 -1.2706 10.7804 -2.5751 39 1 -1.5467 8.6720 -1.2995 40 1 0.1981 8.6564 -0.9475 41 1 -0.8332 9.9457 -0.2816 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624681663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:07 Heat of formation + Delta-G solvation = -18.956962 kcal Electronic energy + Delta-G solvation = -23563.784743 eV Core-core repulsion = 19868.498873 eV Total energy + Delta-G solvation = -3695.285870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.79528 -39.32668 -37.78457 -36.57001 -35.02358 -34.05328 -32.44278 -31.90588 -31.06686 -28.94186 -27.37623 -26.09539 -25.33718 -23.40973 -22.98611 -21.39025 -20.51801 -19.38880 -18.39373 -17.89328 -17.25976 -16.78847 -16.39414 -15.94584 -15.29720 -15.18033 -14.92793 -14.45187 -14.36532 -14.08535 -13.33929 -13.11845 -13.04604 -12.70045 -12.45277 -12.18795 -12.00076 -11.82196 -11.62751 -11.53567 -11.44857 -11.27483 -11.19638 -10.98185 -10.85849 -10.32663 -10.23215 -10.19658 -9.99885 -9.63662 -9.07968 -8.98920 -8.52438 -7.87093 -6.14578 -4.24346 0.81562 1.92657 2.44141 3.20913 3.22138 3.29540 3.31032 3.32766 3.50196 3.77878 4.27289 4.43278 4.60746 4.69389 4.83058 4.86769 4.92995 5.07153 5.10424 5.16741 5.28995 5.43084 5.45095 5.52680 5.61907 5.76365 5.88421 6.39138 6.45586 6.65012 6.69202 7.02838 7.19760 7.34710 7.41077 7.60067 7.70807 7.87719 7.93572 8.15883 8.60521 8.75268 9.08293 9.43056 10.90785 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.027890 B = 0.002600 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.702637 B =10766.222864 C =10823.736280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.169 3.831 4 N -0.380 5.380 5 O 0.088 5.912 6 C 0.190 3.810 7 C 0.154 3.846 8 O -0.353 6.353 9 C 0.043 3.957 10 C 0.500 3.500 11 O -0.526 6.526 12 N -0.706 5.706 13 C 0.272 3.728 14 H 0.050 0.950 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.881 5.881 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.128 4.128 24 C -0.138 4.138 25 N -0.461 5.461 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.389 0.611 36 H 0.264 0.736 37 H 0.032 0.968 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.821 -14.846 6.475 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.103 4.103 4 N -0.086 5.086 5 O 0.028 5.972 6 C -0.032 4.032 7 C 0.075 3.925 8 O -0.270 6.270 9 C -0.037 4.037 10 C 0.284 3.716 11 O -0.403 6.403 12 N -0.356 5.356 13 C 0.170 3.830 14 H 0.068 0.932 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.167 4.167 24 C -0.195 4.195 25 N -0.196 5.196 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.221 0.779 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.455 -15.655 7.383 20.756 hybrid contribution 0.746 1.025 -1.098 1.677 sum 12.201 -14.630 6.285 20.060 Atomic orbital electron populations 1.21759 0.93081 1.02843 1.03109 1.19946 0.97036 0.85413 1.04605 1.25938 1.00449 1.00571 0.83388 1.74636 1.17143 0.92928 1.23930 1.85302 1.60195 1.27101 1.24632 1.28212 0.96668 0.96184 0.82092 1.20585 0.89083 0.85628 0.97181 1.88092 1.30034 1.35140 1.73742 1.22461 0.97948 0.86929 0.96328 1.19865 0.89436 0.82172 0.80177 1.90724 1.31594 1.69086 1.48846 1.46398 1.13851 1.22477 1.52887 1.18820 0.81673 0.89333 0.93151 0.93230 1.21251 1.01957 1.25510 1.08527 0.91969 1.24895 0.94995 0.96633 0.97207 1.69907 1.04936 1.38742 1.38283 0.86395 0.78162 0.79873 0.82665 1.19743 1.20885 1.20882 1.21945 1.02105 0.98942 0.93663 1.21844 1.01190 0.98926 0.97565 1.71895 1.16154 1.02183 1.29404 0.92221 0.91677 0.90979 0.88518 0.89091 0.89034 0.88154 0.90101 0.90037 0.77900 0.92569 0.94965 0.88242 0.93164 0.94286 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 2.11 7.47 -156.37 -1.17 0.95 16 4 N -0.38 -5.16 12.16 30.90 0.38 -4.79 16 5 O 0.09 1.15 11.31 18.11 0.20 1.36 16 6 C 0.19 2.35 8.14 -13.05 -0.11 2.24 16 7 C 0.15 1.47 6.56 36.00 0.24 1.71 16 8 O -0.35 -5.09 9.86 -55.14 -0.54 -5.63 16 9 C 0.04 0.55 6.42 36.01 0.23 0.78 16 10 C 0.50 9.48 6.48 -10.99 -0.07 9.41 16 11 O -0.53 -12.51 13.64 -14.35 -0.20 -12.70 16 12 N -0.71 -13.73 5.02 -54.93 -0.28 -14.00 16 13 C 0.27 6.65 2.24 -69.08 -0.15 6.50 16 14 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 15 C -0.53 -13.68 8.73 -34.44 -0.30 -13.98 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 18 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 19 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 24 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 25 N -0.46 -6.20 11.55 -9.87 -0.11 -6.32 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.39 6.24 8.54 -40.82 -0.35 5.90 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 39 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 40 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -33.58 348.60 -6.71 -40.29 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.94 Total: 3.20 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.07 Total: 1.94 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.61 Total: -48.88 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.53 Total: -16.98 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.58 -6.71 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624681663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.329 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds