Wall clock time and date at job start Tue Mar 31 2020 08:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 N 1.46500 * 109.46981 * 120.00452 * 2 1 3 5 5 C 1.34947 * 126.03669 * 274.99590 * 4 2 1 6 6 C 1.35314 * 107.74841 * 179.97438 * 5 4 2 7 7 C 1.50699 * 126.04240 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46959 * 339.99739 * 7 6 5 9 9 C 1.52997 * 109.47078 * 99.99651 * 7 6 5 10 10 N 1.46899 * 109.47244 * 219.99860 * 7 6 5 11 11 C 1.46894 * 111.00220 * 154.99886 * 10 7 6 12 12 C 1.53001 * 109.47508 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47238 * 179.97438 * 12 11 10 14 14 S 1.81005 * 109.47028 * 180.02562 * 13 12 11 15 15 C 1.76197 * 100.00000 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99769 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47222 * 90.00575 * 19 17 15 21 21 H 1.48504 * 109.47286 * 210.00835 * 19 17 15 22 22 H 1.48504 * 109.47284 * 330.00385 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 6 5 4 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 6 5 25 25 H 1.09007 * 109.47046 * 300.00014 * 1 2 3 26 26 H 1.09002 * 109.47006 * 59.99589 * 1 2 3 27 27 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47234 * 240.00393 * 2 1 3 29 29 H 1.08995 * 109.47443 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47251 * 300.00872 * 3 2 1 31 31 H 1.09007 * 109.46985 * 59.99948 * 3 2 1 32 32 H 1.08005 * 126.12899 * 359.96069 * 5 4 2 33 33 H 1.09002 * 109.47153 * 60.00207 * 9 7 6 34 34 H 1.08998 * 109.47533 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47853 * 300.00179 * 9 7 6 36 36 H 1.00904 * 110.99838 * 31.04414 * 10 7 6 37 37 H 1.08998 * 109.47346 * 299.99916 * 11 10 7 38 38 H 1.09007 * 109.47035 * 60.00148 * 11 10 7 39 39 H 1.08998 * 109.46853 * 300.00345 * 12 11 10 40 40 H 1.09007 * 109.46934 * 59.99579 * 12 11 10 41 41 H 1.08998 * 109.47509 * 299.99978 * 13 12 11 42 42 H 1.08999 * 109.47418 * 60.00588 * 13 12 11 43 43 H 0.97003 * 120.00088 * 179.97438 * 18 17 15 44 44 H 1.08000 * 125.89813 * 179.73483 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1933 -0.1394 2.4154 6 6 2.6558 -1.1055 3.2423 7 6 2.9910 -0.9375 4.7019 8 1 3.1501 0.1187 4.9189 9 6 1.8353 -1.4650 5.5545 10 7 4.2130 -1.6909 5.0135 11 6 4.8985 -1.1223 6.1817 12 6 6.1631 -1.9320 6.4751 13 6 6.8774 -1.3394 7.6914 14 16 8.3738 -2.2969 8.0381 15 6 8.9793 -1.4209 9.4418 16 1 8.4361 -0.5683 9.8218 17 6 10.1537 -1.8272 10.0599 18 7 10.8155 -2.8667 9.5971 19 14 10.7960 -0.8981 11.5478 20 1 10.2312 -1.4940 12.7852 21 1 12.2778 -0.9888 11.5863 22 1 10.3896 0.5272 11.4546 23 6 2.7730 -2.2862 2.5016 24 7 2.3854 -2.0402 1.2764 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8898 31 1 1.6767 1.9563 0.8900 32 1 1.9992 0.8887 2.6832 33 1 1.6762 -2.5212 5.3375 34 1 2.0779 -1.3440 6.6103 35 1 0.9286 -0.9060 5.3234 36 1 4.8289 -1.7272 4.2151 37 1 5.1694 -0.0868 5.9757 38 1 4.2352 -1.1594 7.0459 39 1 5.8919 -2.9674 6.6813 40 1 6.8266 -1.8955 5.6110 41 1 7.1487 -0.3041 7.4848 42 1 6.2142 -1.3757 8.5557 43 1 11.6365 -3.1505 10.0289 44 1 3.1205 -3.2374 2.8770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541644474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:42 Heat of formation + Delta-G solvation = 53.414751 kcal Electronic energy + Delta-G solvation = -20760.329328 eV Core-core repulsion = 17646.767696 eV Total energy + Delta-G solvation = -3113.561631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52610 -37.37776 -35.95313 -33.50525 -32.38968 -30.56852 -30.09225 -28.64583 -27.83705 -25.73328 -24.94111 -23.24578 -22.28957 -21.05223 -20.15988 -19.95031 -17.45231 -17.16489 -15.77743 -15.65982 -15.18056 -15.04908 -14.77093 -14.57322 -14.38655 -14.09568 -13.74920 -13.25829 -13.14660 -12.98073 -12.72999 -12.63462 -12.38182 -12.16147 -12.10855 -11.90671 -11.69178 -11.44697 -11.37982 -11.19388 -11.04104 -10.74534 -10.62167 -10.55210 -10.29249 -9.58841 -9.48601 -9.02224 -8.57217 -8.35210 -8.24546 -6.47792 -6.18952 -3.88631 1.69256 2.21991 2.65499 3.24138 3.24788 3.31441 3.61001 3.99744 4.23430 4.28347 4.34599 4.51745 4.56070 4.70662 4.91183 4.98938 5.10495 5.11800 5.16783 5.19650 5.29076 5.37425 5.38465 5.44040 5.48263 5.57918 5.63281 5.65039 5.68127 5.80831 5.91947 5.94867 6.00190 6.20933 6.28569 6.41309 6.52099 6.68074 6.79356 6.83100 7.17298 7.49141 7.56814 7.64159 8.40412 9.27178 10.89194 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.035340 B = 0.002060 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.107365 B =13589.673733 C =13636.958393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.369 5.369 5 C 0.059 3.941 6 C -0.238 4.238 7 C 0.164 3.836 8 H 0.044 0.956 9 C -0.133 4.133 10 N -0.682 5.682 11 C 0.064 3.936 12 C -0.095 4.095 13 C -0.112 4.112 14 S -0.133 6.133 15 C -0.515 4.515 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.069 3.931 24 N -0.301 5.301 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.342 0.658 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.267 0.733 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.690 8.211 -18.375 29.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.223 4.223 4 N -0.152 5.152 5 C -0.088 4.088 6 C -0.250 4.250 7 C 0.053 3.947 8 H 0.062 0.938 9 C -0.191 4.191 10 N -0.314 5.314 11 C -0.066 4.066 12 C -0.134 4.134 13 C -0.261 4.261 14 S 0.095 5.905 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.139 4.139 18 N -0.505 5.505 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.118 4.118 24 N -0.121 5.121 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.659 6.299 -19.826 30.031 hybrid contribution 0.445 2.845 2.056 3.538 sum -21.214 9.144 -17.771 29.146 Atomic orbital electron populations 1.22239 0.93695 1.03318 1.03008 1.21232 0.94737 0.92731 0.85965 1.22203 1.02472 0.94028 1.03628 1.48774 1.50758 1.07498 1.08157 1.22168 1.01584 0.99456 0.85599 1.20141 1.14006 0.93743 0.97110 1.19673 0.91167 0.95297 0.88578 0.93847 1.21759 0.96330 1.01784 0.99223 1.60554 1.07706 1.54590 1.08534 1.22062 0.95499 0.95736 0.93343 1.21238 0.94518 1.00148 0.97476 1.23221 1.01394 1.02203 0.99270 1.84639 1.22762 1.42794 1.40309 1.22696 1.11638 1.17220 1.14825 0.91009 1.25018 0.95771 0.95306 0.97778 1.70028 1.16329 1.24253 1.39921 0.86173 0.77936 0.79802 0.81645 1.20284 1.20790 1.19736 1.23802 0.98335 0.99523 0.90121 1.77383 1.20959 0.93040 1.20750 0.91917 0.90530 0.91595 0.88042 0.91378 0.89968 0.91541 0.81537 0.91940 0.92601 0.93160 0.83925 0.95559 0.91095 0.90708 0.91914 0.92433 0.92145 0.92350 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.52 37.16 0.35 -0.48 16 2 C 0.16 0.97 3.93 -67.93 -0.27 0.71 16 3 C -0.17 -0.71 8.84 37.16 0.33 -0.38 16 4 N -0.37 -3.48 3.53 -54.87 -0.19 -3.67 16 5 C 0.06 0.53 10.50 -17.22 -0.18 0.35 16 6 C -0.24 -2.45 4.81 -105.05 -0.51 -2.96 16 7 C 0.16 1.71 3.05 -68.87 -0.21 1.50 16 8 H 0.04 0.45 7.79 -51.93 -0.40 0.04 16 9 C -0.13 -1.34 9.40 37.16 0.35 -0.99 16 10 N -0.68 -8.16 6.10 -107.96 -0.66 -8.82 16 11 C 0.06 0.86 5.48 -3.83 -0.02 0.84 16 12 C -0.10 -1.58 5.48 -26.73 -0.15 -1.72 16 13 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 14 S -0.13 -3.55 21.44 -107.50 -2.30 -5.86 16 15 C -0.52 -15.00 9.50 30.94 0.29 -14.71 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 19 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.07 0.77 11.45 -17.36 -0.20 0.57 16 24 N -0.30 -3.59 12.58 30.63 0.39 -3.21 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.25 7.16 -51.93 -0.37 -0.12 16 32 H 0.17 1.05 7.26 -52.48 -0.38 0.67 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.34 4.07 8.15 -39.29 -0.32 3.75 16 37 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 38 H 0.07 0.96 7.44 -51.93 -0.39 0.57 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 41 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 42 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -32.79 376.03 -9.19 -41.98 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.71 Total: 0.17 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.09 Total: -17.43 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.27 Total: -41.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.79 -9.19 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541644474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.396 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds