Wall clock time and date at job start Tue Mar 31 2020 08:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 N 1.46500 * 109.46981 * 120.00452 * 2 1 3 5 5 C 1.34947 * 126.03669 * 274.99590 * 4 2 1 6 6 C 1.35314 * 107.74841 * 179.97438 * 5 4 2 7 7 C 1.50699 * 126.04240 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46959 * 339.99739 * 7 6 5 9 9 C 1.52997 * 109.47078 * 99.99651 * 7 6 5 10 10 N 1.46899 * 109.47244 * 219.99860 * 7 6 5 11 11 C 1.46894 * 111.00220 * 154.99886 * 10 7 6 12 12 C 1.53001 * 109.47508 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47238 * 179.97438 * 12 11 10 14 14 S 1.81005 * 109.47028 * 180.02562 * 13 12 11 15 15 C 1.76197 * 100.00000 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99769 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47222 * 90.00575 * 19 17 15 21 21 H 1.48504 * 109.47286 * 210.00835 * 19 17 15 22 22 H 1.48504 * 109.47284 * 330.00385 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 6 5 4 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 6 5 25 25 H 1.09007 * 109.47046 * 300.00014 * 1 2 3 26 26 H 1.09002 * 109.47006 * 59.99589 * 1 2 3 27 27 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47234 * 240.00393 * 2 1 3 29 29 H 1.08995 * 109.47443 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47251 * 300.00872 * 3 2 1 31 31 H 1.09007 * 109.46985 * 59.99948 * 3 2 1 32 32 H 1.08005 * 126.12899 * 359.96069 * 5 4 2 33 33 H 1.09002 * 109.47153 * 60.00207 * 9 7 6 34 34 H 1.08998 * 109.47533 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47853 * 300.00179 * 9 7 6 36 36 H 1.00904 * 110.99838 * 31.04414 * 10 7 6 37 37 H 1.08998 * 109.47346 * 299.99916 * 11 10 7 38 38 H 1.09007 * 109.47035 * 60.00148 * 11 10 7 39 39 H 1.08998 * 109.46853 * 300.00345 * 12 11 10 40 40 H 1.09007 * 109.46934 * 59.99579 * 12 11 10 41 41 H 1.08998 * 109.47509 * 299.99978 * 13 12 11 42 42 H 1.08999 * 109.47418 * 60.00588 * 13 12 11 43 43 H 0.97003 * 120.00088 * 179.97438 * 18 17 15 44 44 H 1.08000 * 125.89813 * 179.73483 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1933 -0.1394 2.4154 6 6 2.6558 -1.1055 3.2423 7 6 2.9910 -0.9375 4.7019 8 1 3.1501 0.1187 4.9189 9 6 1.8353 -1.4650 5.5545 10 7 4.2130 -1.6909 5.0135 11 6 4.8985 -1.1223 6.1817 12 6 6.1631 -1.9320 6.4751 13 6 6.8774 -1.3394 7.6914 14 16 8.3738 -2.2969 8.0381 15 6 8.9793 -1.4209 9.4418 16 1 8.4361 -0.5683 9.8218 17 6 10.1537 -1.8272 10.0599 18 7 10.8155 -2.8667 9.5971 19 14 10.7960 -0.8981 11.5478 20 1 10.2312 -1.4940 12.7852 21 1 12.2778 -0.9888 11.5863 22 1 10.3896 0.5272 11.4546 23 6 2.7730 -2.2862 2.5016 24 7 2.3854 -2.0402 1.2764 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8898 31 1 1.6767 1.9563 0.8900 32 1 1.9992 0.8887 2.6832 33 1 1.6762 -2.5212 5.3375 34 1 2.0779 -1.3440 6.6103 35 1 0.9286 -0.9060 5.3234 36 1 4.8289 -1.7272 4.2151 37 1 5.1694 -0.0868 5.9757 38 1 4.2352 -1.1594 7.0459 39 1 5.8919 -2.9674 6.6813 40 1 6.8266 -1.8955 5.6110 41 1 7.1487 -0.3041 7.4848 42 1 6.2142 -1.3757 8.5557 43 1 11.6365 -3.1505 10.0289 44 1 3.1205 -3.2374 2.8770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541644474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:41 Heat of formation + Delta-G solvation = 33.322690 kcal Electronic energy + Delta-G solvation = -20761.200585 eV Core-core repulsion = 17646.767696 eV Total energy + Delta-G solvation = -3114.432888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25867 -38.29158 -36.58462 -34.72113 -34.54315 -31.42673 -30.98233 -29.41949 -28.20859 -27.82897 -26.23128 -24.00975 -23.13215 -22.32621 -20.84077 -20.71138 -19.52700 -17.92004 -16.88422 -16.80166 -16.45608 -16.25672 -15.76425 -15.64117 -15.58194 -14.98247 -14.83888 -14.68561 -13.83058 -13.80938 -13.64080 -13.50592 -13.23039 -13.13866 -13.06039 -12.94440 -12.90877 -12.72101 -12.45197 -12.33976 -12.32915 -12.23223 -11.98885 -11.74079 -11.37351 -11.26474 -11.12908 -10.33962 -10.29209 -9.32546 -9.29718 -8.64845 -8.35863 -6.12042 0.97450 1.32277 1.40348 1.49669 1.60931 1.76581 1.86101 2.30062 2.98052 3.20626 3.37417 3.54473 3.91604 3.93377 4.00765 4.08393 4.10138 4.24080 4.33506 4.40485 4.45685 4.55933 4.60733 4.63586 4.66952 4.78404 4.82160 4.84117 4.85297 4.92813 4.94073 5.11364 5.14013 5.18290 5.21255 5.26276 5.38187 5.40963 5.47857 5.73444 6.14165 6.19475 6.24956 6.53276 6.80030 7.06053 8.73518 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.035340 B = 0.002060 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.107365 B =13589.673733 C =13636.958393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 C -0.159 4.159 4 N -0.368 5.368 5 C 0.067 3.933 6 C -0.252 4.252 7 C 0.169 3.831 8 H 0.053 0.947 9 C -0.129 4.129 10 N -0.686 5.686 11 C 0.078 3.922 12 C -0.083 4.083 13 C -0.086 4.086 14 S -0.202 6.202 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.013 3.987 18 N -0.908 5.908 19 Si 0.995 3.005 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.262 1.262 23 C 0.057 3.943 24 N -0.336 5.336 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.197 0.803 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.343 0.657 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.271 0.729 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 10.612 -18.335 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.217 4.217 4 N -0.150 5.150 5 C -0.081 4.081 6 C -0.264 4.264 7 C 0.059 3.941 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.318 5.318 11 C -0.053 4.053 12 C -0.122 4.122 13 C -0.236 4.236 14 S 0.027 5.973 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.192 4.192 18 N -0.544 5.544 19 Si 0.817 3.183 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.128 4.128 24 N -0.158 5.158 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.214 0.786 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.161 0.839 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.959 8.694 -19.809 31.545 hybrid contribution 0.752 2.103 1.924 2.948 sum -22.207 10.797 -17.885 30.489 Atomic orbital electron populations 1.22197 0.92598 1.02449 1.04327 1.21558 0.95592 0.93627 0.84737 1.22189 1.01699 0.92597 1.05185 1.49082 1.49959 1.06781 1.09210 1.22611 1.00024 1.00396 0.85040 1.20154 1.15223 0.93829 0.97166 1.19646 0.90247 0.95437 0.88787 0.92957 1.21733 0.96826 1.01312 0.98885 1.60513 1.08107 1.55033 1.08115 1.21840 0.93919 0.95344 0.94229 1.21121 0.95637 0.99947 0.95533 1.23151 0.98146 1.01302 1.00975 1.84675 1.26965 1.45246 1.40410 1.23047 1.12351 1.17538 1.15588 0.90869 1.26100 0.95833 0.96175 1.01088 1.70165 1.16848 1.25842 1.41569 0.84998 0.77431 0.78581 0.77275 1.19276 1.19941 1.18651 1.23888 0.98553 1.00053 0.90302 1.77318 1.22262 0.94876 1.21309 0.91619 0.88152 0.93517 0.88582 0.92501 0.87813 0.90596 0.78588 0.93035 0.92952 0.91822 0.83883 0.94781 0.90719 0.91609 0.92134 0.92019 0.91853 0.92003 0.79826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.52 71.98 0.69 -0.63 16 2 C 0.15 1.61 3.93 44.99 0.18 1.78 16 3 C -0.16 -0.96 8.84 71.98 0.64 -0.33 16 4 N -0.37 -6.53 3.53 -327.50 -1.15 -7.69 16 5 C 0.07 1.07 10.50 83.54 0.88 1.95 16 6 C -0.25 -4.87 4.81 -20.14 -0.10 -4.97 16 7 C 0.17 3.24 3.05 44.17 0.13 3.38 16 8 H 0.05 0.93 7.79 -2.39 -0.02 0.92 16 9 C -0.13 -2.41 9.40 71.98 0.68 -1.74 16 10 N -0.69 -15.59 6.10 -495.46 -3.02 -18.62 16 11 C 0.08 1.96 5.48 86.30 0.47 2.44 16 12 C -0.08 -2.72 5.48 30.59 0.17 -2.55 16 13 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 14 S -0.20 -10.96 21.44 -56.49 -1.21 -12.17 16 15 C -0.54 -31.50 9.50 67.95 0.65 -30.86 16 16 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.91 -55.60 13.22 21.65 0.29 -55.31 16 19 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 C 0.06 1.29 11.45 85.24 0.98 2.26 16 24 N -0.34 -8.04 12.58 -57.02 -0.72 -8.76 16 25 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.33 7.16 -2.38 -0.02 0.32 16 32 H 0.20 1.81 7.26 -2.91 -0.02 1.79 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.34 7.86 8.15 -89.69 -0.73 7.13 16 37 H 0.03 0.83 8.06 -2.39 -0.02 0.81 16 38 H 0.07 1.87 7.44 -2.38 -0.02 1.85 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 42 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -71.49 376.03 2.66 -68.83 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.23 Total: 18.48 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 6.23 Total: -31.17 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.61 Total: -90.37 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.21 Total: -12.17 kcal Total: -71.49 2.66 -68.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541644474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.153 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds