Wall clock time and date at job start Tue Mar 31 2020 08:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47178 * 2 1 4 4 C 1.42894 * 114.00183 * 174.68673 * 3 2 1 5 5 H 1.08999 * 109.47119 * 336.36162 * 4 3 2 6 6 C 1.50702 * 109.47214 * 216.36296 * 4 3 2 7 7 O 1.21290 * 119.99938 * 347.14604 * 6 4 3 8 8 N 1.34775 * 120.00457 * 167.14422 * 6 4 3 9 9 C 1.46502 * 119.99962 * 5.07214 * 8 6 4 10 10 C 1.50698 * 109.46880 * 94.45133 * 9 8 6 11 11 H 1.07998 * 120.00191 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99802 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00471 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00187 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46733 * 59.99955 * 14 12 10 16 16 H 1.48496 * 109.47333 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46964 * 300.00048 * 14 12 10 18 18 C 1.46501 * 120.00253 * 185.07255 * 8 6 4 19 19 C 1.53000 * 109.47215 * 89.64107 * 18 8 6 20 20 C 1.53005 * 109.46962 * 64.43073 * 19 18 8 21 21 C 1.53001 * 109.47226 * 184.43309 * 19 18 8 22 22 C 1.52999 * 109.47106 * 304.43525 * 19 18 8 23 23 C 1.52993 * 109.47592 * 96.36307 * 4 3 2 24 24 C 1.53002 * 117.50233 * 294.44677 * 23 4 3 25 25 C 1.52996 * 60.03158 * 107.47684 * 24 23 4 26 26 H 1.09002 * 109.46753 * 299.99879 * 1 2 3 27 27 H 1.08993 * 109.47492 * 59.99955 * 1 2 3 28 28 H 1.09000 * 109.46661 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46753 * 240.00121 * 2 1 3 30 30 H 1.08993 * 109.47492 * 120.00045 * 2 1 3 31 31 H 1.08993 * 109.47048 * 214.45353 * 9 8 6 32 32 H 1.09003 * 109.47003 * 334.45639 * 9 8 6 33 33 H 0.97003 * 120.00742 * 180.02562 * 13 12 10 34 34 H 1.08993 * 109.47123 * 209.64174 * 18 8 6 35 35 H 1.08998 * 109.46797 * 329.64565 * 18 8 6 36 36 H 1.09005 * 109.46882 * 60.00547 * 20 19 18 37 37 H 1.09000 * 109.47027 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47329 * 300.00352 * 20 19 18 39 39 H 1.08997 * 109.46828 * 60.00241 * 21 19 18 40 40 H 1.09005 * 109.46691 * 180.02562 * 21 19 18 41 41 H 1.08994 * 109.47032 * 300.00111 * 21 19 18 42 42 H 1.09009 * 109.47386 * 65.15359 * 22 19 18 43 43 H 1.09005 * 109.47405 * 185.15149 * 22 19 18 44 44 H 1.08999 * 109.47263 * 305.15736 * 22 19 18 45 45 H 1.09007 * 115.55443 * 148.77268 * 23 4 3 46 46 H 1.08993 * 117.50477 * 214.98011 * 24 23 4 47 47 H 1.09006 * 117.49455 * 359.97403 * 24 23 4 48 48 H 1.09006 * 117.49866 * 107.50936 * 25 24 23 49 49 H 1.09007 * 117.50040 * 252.52099 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4255 1.4620 0.1209 5 1 3.8232 0.5659 0.5974 6 6 3.7624 2.6682 0.9591 7 8 2.9059 3.4885 1.2133 8 7 5.0155 2.8356 1.4263 9 6 6.0758 1.9061 1.0287 10 6 6.8162 2.4667 -0.1581 11 1 6.5258 3.4197 -0.5748 12 6 7.8637 1.7623 -0.7126 13 7 8.2165 0.6010 -0.2061 14 14 8.7812 2.4567 -2.1842 15 1 9.3815 3.7655 -1.8206 16 1 9.8560 1.5146 -2.5871 17 1 7.8358 2.6425 -3.3142 18 6 5.3173 3.9471 2.3317 19 6 5.1036 3.4986 3.7788 20 6 6.1060 2.3954 4.1241 21 6 5.3114 4.6887 4.7176 22 6 3.6797 2.9630 3.9417 23 6 4.0449 1.6180 -1.2693 24 6 3.9266 0.4349 -2.2323 25 6 3.0905 1.6951 -2.4636 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 6.7693 1.7697 1.8584 32 1 5.6354 0.9454 0.7615 33 1 8.9537 0.1055 -0.5960 34 1 6.3541 4.2549 2.1961 35 1 4.6573 4.7857 2.1100 36 1 7.1205 2.7770 4.0081 37 1 5.9540 2.0762 5.1552 38 1 5.9580 1.5476 3.4553 39 1 4.5973 5.4745 4.4715 40 1 5.1596 4.3690 5.7486 41 1 6.3258 5.0702 4.6015 42 1 3.5600 2.0607 3.3419 43 1 3.4973 2.7289 4.9905 44 1 2.9673 3.7177 3.6086 45 1 4.9567 2.2138 -1.3137 46 1 4.7603 0.2525 -2.9104 47 1 3.4078 -0.4548 -1.8752 48 1 3.3741 2.3419 -3.2940 49 1 2.0217 1.6347 -2.2584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599348607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:34 Heat of formation + Delta-G solvation = -69.032326 kcal Electronic energy + Delta-G solvation = -26821.516795 eV Core-core repulsion = 23363.432932 eV Total energy + Delta-G solvation = -3458.083862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.209 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88373 -38.18824 -36.35742 -35.49793 -34.25482 -32.37649 -31.20737 -28.23353 -27.54433 -26.92745 -26.65008 -24.96745 -22.84979 -22.77747 -21.64985 -20.48839 -19.13130 -18.04055 -16.77759 -16.50333 -16.28160 -15.91967 -15.16024 -14.79300 -14.48805 -14.26113 -14.07103 -13.68450 -13.44759 -13.02690 -12.70949 -12.47405 -12.37590 -12.21191 -12.02695 -11.94715 -11.80532 -11.55931 -11.26221 -11.21608 -11.11513 -10.97684 -10.91837 -10.80749 -10.74130 -10.50875 -10.36390 -10.26099 -10.07813 -9.89240 -9.68151 -9.57737 -9.25486 -8.69374 -8.47327 -7.62712 -6.21399 -4.27152 3.21029 3.26532 3.28515 3.41504 3.50693 4.25499 4.39131 4.50297 5.09058 5.11326 5.18152 5.21664 5.27811 5.29078 5.35361 5.41305 5.50453 5.54530 5.69741 5.76820 5.85356 5.90334 5.92165 5.96551 6.00602 6.10915 6.14251 6.18902 6.21915 6.22121 6.24245 6.35115 6.40712 6.43185 6.52550 6.59300 6.66476 6.67890 6.82059 6.89472 7.09062 7.17030 7.43829 7.63465 7.73564 8.03569 8.37141 8.76583 9.07903 9.38777 10.84563 Molecular weight = 297.21amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.008361 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.212689 B = 3348.033727 C = 5637.768518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.112 3.888 5 H 0.083 0.917 6 C 0.523 3.477 7 O -0.551 6.551 8 N -0.591 5.591 9 C 0.230 3.770 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.070 3.930 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.132 3.868 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.166 4.166 24 C -0.176 4.176 25 C -0.174 4.174 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.152 0.848 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 -1.012 3.452 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.276 6.276 4 C 0.051 3.949 5 H 0.100 0.900 6 C 0.310 3.690 7 O -0.430 6.430 8 N -0.322 5.322 9 C 0.110 3.890 10 C -0.574 4.574 11 H 0.080 0.920 12 C -0.133 4.133 13 N -0.524 5.524 14 Si 0.717 3.283 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.008 3.992 19 C -0.086 4.086 20 C -0.198 4.198 21 C -0.193 4.193 22 C -0.188 4.188 23 C -0.184 4.184 24 C -0.213 4.213 25 C -0.211 4.211 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.170 0.830 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.854 -0.596 3.548 8.639 hybrid contribution 1.003 -0.134 -0.887 1.345 sum -6.851 -0.730 2.661 7.386 Atomic orbital electron populations 1.21709 0.93991 1.01693 1.03090 1.22643 0.95410 0.84604 1.00057 1.87986 1.20299 1.25262 1.94070 1.21338 0.81365 0.97419 0.94799 0.89981 1.20047 0.82536 0.86925 0.79531 1.90592 1.48154 1.44633 1.59587 1.48068 1.08987 1.29802 1.45364 1.19623 0.85170 0.88085 0.96078 1.21377 1.15624 1.06081 1.14283 0.92039 1.24880 0.96642 0.94698 0.97112 1.69897 1.28465 1.13047 1.40986 0.86678 0.79614 0.79003 0.82970 1.20107 1.21151 1.20042 1.21338 1.01338 0.89489 0.87027 1.20963 0.96040 0.95852 0.95742 1.21973 0.98506 0.98906 1.00422 1.21779 1.01413 0.97530 0.98594 1.21816 0.95798 1.01384 0.99785 1.23215 1.02667 1.03688 0.88844 1.22906 1.02543 0.92110 1.03777 1.22871 0.97971 1.00590 0.99702 0.91926 0.91949 0.91487 0.93125 0.93670 0.93805 0.94520 0.92468 0.90383 0.91045 0.92642 0.93761 0.91565 0.92811 0.92977 0.92714 0.93305 0.93997 0.91917 0.83043 0.88908 0.89757 0.89574 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.05 0.71 6.30 37.16 0.23 0.95 16 3 O -0.36 -6.60 7.94 -54.80 -0.44 -7.04 16 4 C 0.11 2.17 2.09 -27.89 -0.06 2.11 16 5 H 0.08 1.57 6.40 -51.93 -0.33 1.23 16 6 C 0.52 11.11 5.23 -10.98 -0.06 11.05 16 7 O -0.55 -12.83 14.48 -14.02 -0.20 -13.03 16 8 N -0.59 -12.10 1.99 -175.06 -0.35 -12.45 16 9 C 0.23 5.16 3.90 -5.19 -0.02 5.14 16 10 C -0.54 -13.13 6.83 -34.44 -0.24 -13.36 16 11 H 0.06 1.56 7.64 -52.49 -0.40 1.15 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -23.28 13.29 55.43 0.74 -22.54 16 14 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 C 0.13 2.43 4.62 -4.04 -0.02 2.41 16 19 C -0.08 -1.35 0.85 -154.51 -0.13 -1.48 16 20 C -0.14 -2.23 7.46 37.16 0.28 -1.95 16 21 C -0.14 -1.80 8.47 37.16 0.31 -1.48 16 22 C -0.13 -2.16 7.12 37.16 0.26 -1.89 16 23 C -0.17 -3.25 4.93 -90.59 -0.45 -3.69 16 24 C -0.18 -3.01 9.90 -26.73 -0.26 -3.27 16 25 C -0.17 -2.99 9.86 -26.70 -0.26 -3.25 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.68 5.81 -51.93 -0.30 0.38 16 30 H 0.05 0.62 7.98 -51.93 -0.41 0.20 16 31 H 0.04 1.02 5.84 -51.93 -0.30 0.72 16 32 H 0.04 0.86 5.73 -51.93 -0.30 0.56 16 33 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.08 1.44 8.07 -51.93 -0.42 1.03 16 35 H 0.07 1.36 7.37 -51.93 -0.38 0.98 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.17 5.84 -51.93 -0.30 0.87 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.88 6.66 -51.92 -0.35 0.54 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.12 7.25 -51.93 -0.38 0.75 16 45 H 0.15 3.39 4.85 -51.93 -0.25 3.14 16 46 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 47 H 0.08 1.30 6.07 -51.93 -0.32 0.98 16 48 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 49 H 0.10 1.63 6.96 -51.92 -0.36 1.27 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -27.32 372.21 -8.37 -35.70 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.59 Total: 7.24 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.12 Total: -8.41 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.39 Total: -34.99 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.64 Total: -20.07 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.32 -8.37 -35.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599348607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.337 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds