Wall clock time and date at job start Tue Mar 31 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47063 * 239.99500 * 2 1 3 5 5 C 1.50702 * 109.46998 * 65.00184 * 4 2 1 6 6 H 1.07996 * 120.00094 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00041 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47078 * 89.99859 * 9 7 5 11 11 H 1.48501 * 109.47276 * 209.99847 * 9 7 5 12 12 H 1.48494 * 109.46947 * 329.99970 * 9 7 5 13 13 C 1.53006 * 109.47229 * 119.99434 * 2 1 3 14 14 N 1.46901 * 109.47256 * 295.00630 * 13 2 1 15 15 C 1.47006 * 110.99351 * 293.94947 * 14 13 2 16 16 C 1.53103 * 109.29992 * 177.60187 * 15 14 13 17 17 H 1.09002 * 109.50857 * 296.95245 * 16 15 14 18 18 C 1.53001 * 109.51211 * 176.85565 * 16 15 14 19 19 O 1.43040 * 109.23631 * 56.88189 * 16 15 14 20 20 C 1.42922 * 113.71607 * 301.44237 * 19 16 15 21 21 C 1.53076 * 109.54648 * 178.72640 * 20 19 16 22 22 C 1.53113 * 109.16117 * 63.08717 * 21 20 19 23 23 O 1.42903 * 109.40883 * 57.47327 * 22 21 20 24 24 C 1.42911 * 114.13447 * 298.82097 * 23 22 21 25 25 C 1.53086 * 109.51231 * 298.47153 * 20 19 16 26 26 C 1.47031 * 111.00016 * 170.32772 * 14 13 2 27 27 H 1.09003 * 109.47416 * 299.99909 * 1 2 3 28 28 H 1.08996 * 109.47565 * 60.00599 * 1 2 3 29 29 H 1.09001 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46999 * 184.99702 * 4 2 1 31 31 H 1.08998 * 109.47257 * 304.99739 * 4 2 1 32 32 H 0.97007 * 120.00054 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46952 * 174.99605 * 13 2 1 34 34 H 1.09002 * 109.46519 * 54.99780 * 13 2 1 35 35 H 1.09005 * 109.50211 * 57.65495 * 15 14 13 36 36 H 1.09005 * 109.50470 * 297.55191 * 15 14 13 37 37 H 1.08998 * 109.46807 * 60.09607 * 18 16 15 38 38 H 1.09001 * 109.47128 * 180.09237 * 18 16 15 39 39 H 1.09001 * 109.47318 * 300.09743 * 18 16 15 40 40 H 1.08996 * 109.51951 * 182.99351 * 21 20 19 41 41 H 1.08998 * 109.52180 * 303.18232 * 21 20 19 42 42 H 1.09003 * 109.48368 * 297.49413 * 22 21 20 43 43 H 1.08994 * 109.48854 * 177.45751 * 22 21 20 44 44 H 1.08993 * 109.48817 * 301.22343 * 24 23 22 45 45 H 1.08994 * 109.49842 * 181.17746 * 24 23 22 46 46 H 1.08999 * 109.52810 * 56.81799 * 25 20 19 47 47 H 1.09003 * 109.52265 * 177.00987 * 25 20 19 48 48 H 1.09000 * 109.50817 * 302.17340 * 26 14 13 49 49 H 1.09001 * 109.51409 * 62.31049 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0799 0.9740 -2.3758 7 6 1.9932 -0.4019 -3.7282 8 7 2.6772 -1.5185 -3.8509 9 14 1.4984 0.5624 -5.2497 10 1 2.5630 1.5427 -5.5823 11 1 1.3122 -0.3718 -6.3889 12 1 0.2267 1.2827 -4.9873 13 6 2.0400 -0.7211 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.3345 1.3384 2.4894 16 6 1.8573 2.1197 3.7166 17 1 0.7901 2.3225 3.6267 18 6 2.6225 3.4413 3.8104 19 8 2.0985 1.3425 4.8930 20 6 1.4498 0.0690 4.8837 21 6 1.7962 -0.6916 6.1661 22 6 1.2519 0.0805 7.3711 23 8 -0.1588 0.2556 7.2250 24 6 -0.5381 1.0034 6.0677 25 6 -0.0663 0.2680 4.8103 26 6 1.9198 -0.7331 3.6687 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7199 -1.2950 32 1 2.9245 -1.8415 -4.7316 33 1 3.1263 -0.7994 1.2056 34 1 1.6053 -1.7197 1.2953 35 1 2.1017 1.9023 1.5860 36 1 3.4114 1.1820 2.5538 37 1 2.4396 4.0314 2.9125 38 1 2.2834 3.9961 4.6852 39 1 3.6896 3.2377 3.9003 40 1 1.3448 -1.6832 6.1346 41 1 2.8787 -0.7858 6.2526 42 1 1.7355 1.0558 7.4265 43 1 1.4562 -0.4790 8.2839 44 1 -0.0777 1.9906 6.1057 45 1 -1.6226 1.1088 6.0419 46 1 -0.3140 0.8588 3.9284 47 1 -0.5586 -0.7026 4.7496 48 1 1.3819 -1.6803 3.6276 49 1 2.9897 -0.9247 3.7508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602645708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:20 Heat of formation + Delta-G solvation = -124.208388 kcal Electronic energy + Delta-G solvation = -26049.780650 eV Core-core repulsion = 22589.304174 eV Total energy + Delta-G solvation = -3460.476476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.209 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74230 -39.33111 -37.88855 -35.70201 -34.90155 -33.90963 -32.08513 -31.77591 -29.18758 -28.25372 -27.78570 -25.83073 -24.79112 -24.24393 -23.16506 -22.01700 -20.53997 -20.33974 -18.52347 -17.58354 -17.27938 -17.03107 -16.84671 -16.41683 -16.39202 -15.73417 -15.69201 -15.58347 -15.05475 -14.97943 -14.41580 -14.05567 -13.80341 -13.64541 -13.45736 -13.32597 -13.25505 -13.05303 -12.94432 -12.79012 -12.73890 -12.58294 -12.45966 -12.27336 -12.20754 -12.05155 -11.87685 -11.45032 -11.32512 -11.27849 -11.08091 -10.91747 -10.66363 -10.54068 -10.22351 -9.34197 -8.18327 -6.27530 1.39791 1.40599 1.51665 2.40961 2.60465 2.78128 3.00494 3.15335 3.63008 3.73403 3.77967 3.90653 4.00974 4.09043 4.14220 4.23470 4.33146 4.37136 4.39583 4.43519 4.49697 4.52692 4.64080 4.69192 4.73482 4.76888 4.81873 4.83720 4.86320 4.90553 4.91666 4.99998 5.02551 5.10209 5.19906 5.25012 5.27413 5.31431 5.45149 5.49344 5.53471 5.77553 5.87209 5.96469 6.03163 6.26383 6.28830 6.29491 6.88408 7.40947 8.93777 Molecular weight = 297.21amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.003262 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.703481 B = 8582.300909 C = 8806.071288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.073 3.927 14 N -0.526 5.526 15 C 0.022 3.978 16 C 0.092 3.908 17 H 0.071 0.929 18 C -0.140 4.140 19 O -0.379 6.379 20 C 0.123 3.877 21 C -0.137 4.137 22 C 0.066 3.934 23 O -0.400 6.400 24 C 0.066 3.934 25 C -0.165 4.165 26 C 0.031 3.969 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.036 0.964 30 H -0.017 1.017 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.111 0.889 44 H 0.051 0.949 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 6.220 22.347 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.055 4.055 14 N -0.250 5.250 15 C -0.107 4.107 16 C 0.034 3.966 17 H 0.089 0.911 18 C -0.197 4.197 19 O -0.299 6.299 20 C 0.084 3.916 21 C -0.175 4.175 22 C -0.011 4.011 23 O -0.319 6.319 24 C -0.010 4.010 25 C -0.203 4.203 26 C -0.097 4.097 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.807 6.183 22.484 23.628 hybrid contribution 1.190 -0.244 -1.827 2.194 sum -2.616 5.939 20.657 21.653 Atomic orbital electron populations 1.21454 0.94453 1.00426 1.00442 1.21005 0.96813 0.98391 0.92637 0.92728 1.19004 0.93894 0.94739 0.92783 1.21618 1.34361 1.08563 0.91980 0.92024 1.25950 0.95271 0.96070 1.02660 1.70107 1.40328 1.22979 1.24272 0.85514 0.79058 0.78375 0.78531 1.19939 1.21007 1.18625 1.22064 0.96722 0.97147 0.89551 1.62223 1.57473 1.03734 1.01549 1.22894 0.96023 0.91556 1.00190 1.22204 0.99913 0.91259 0.83200 0.91110 1.21739 1.00279 0.94135 1.03555 1.87955 1.72907 1.28823 1.40226 1.21468 0.92146 0.83759 0.94265 1.22174 1.02882 0.99473 0.93009 1.22585 0.80750 0.99809 0.97935 1.87878 1.23724 1.75282 1.45019 1.22572 1.00764 0.93779 0.83932 1.22574 0.95277 1.02924 0.99509 1.22780 0.99224 0.97782 0.89926 0.91572 0.94336 0.94524 0.99911 0.99157 0.92966 0.96542 0.91194 0.89744 0.95399 0.89838 0.90744 0.92378 0.88868 0.89696 0.92918 0.87139 0.93068 0.87873 0.89925 0.90342 0.89303 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.89 71.98 0.64 -3.48 16 2 C -0.07 -2.81 2.26 -10.79 -0.02 -2.84 16 3 H 0.05 2.22 6.29 -2.39 -0.02 2.20 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -29.65 8.41 25.60 0.22 -29.44 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.07 2.51 4.35 86.30 0.38 2.89 16 14 N -0.53 -14.82 3.62 -895.36 -3.24 -18.06 16 15 C 0.02 0.58 4.72 86.32 0.41 0.99 16 16 C 0.09 2.02 3.03 30.63 0.09 2.12 16 17 H 0.07 1.53 6.43 -2.39 -0.02 1.52 16 18 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 19 O -0.38 -8.68 8.90 -148.98 -1.33 -10.01 16 20 C 0.12 2.61 0.69 -10.74 -0.01 2.60 16 21 C -0.14 -2.40 5.15 30.66 0.16 -2.24 16 22 C 0.07 1.12 6.70 72.02 0.48 1.60 16 23 O -0.40 -8.28 10.76 -148.98 -1.60 -9.88 16 24 C 0.07 1.23 6.70 72.02 0.48 1.72 16 25 C -0.17 -3.34 4.51 30.66 0.14 -3.20 16 26 C 0.03 0.76 4.35 86.28 0.38 1.14 16 27 H 0.07 2.12 7.75 -2.39 -0.02 2.10 16 28 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 33 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 34 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.08 2.40 6.27 -2.38 -0.01 2.38 16 36 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 0.95 7.83 -2.39 -0.02 0.93 16 43 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.82 6.08 -2.39 -0.01 1.80 16 47 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 48 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 49 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.19 367.55 1.64 -62.55 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.89 Total: 13.82 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 4.62 Total: -27.76 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.96 Total: -75.06 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -2.93 Total: -19.90 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.19 1.64 -62.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.661 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds