Wall clock time and date at job start Tue Mar 31 2020 07:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00220 * 2 1 4 4 O 1.20824 * 119.99779 * 3.38088 * 3 2 1 5 5 C 1.50695 * 119.99968 * 183.38426 * 3 2 1 6 6 C 1.53003 * 109.46876 * 188.63650 * 5 3 2 7 7 N 1.46897 * 109.47463 * 296.27389 * 6 5 3 8 8 C 1.46907 * 110.99798 * 303.07929 * 7 6 5 9 9 H 1.08998 * 109.47104 * 31.30606 * 8 7 6 10 10 C 1.53000 * 109.46930 * 271.30334 * 8 7 6 11 11 C 1.52996 * 109.46807 * 151.30660 * 8 7 6 12 12 C 1.53003 * 109.47252 * 303.86293 * 11 8 7 13 13 C 1.50700 * 109.47062 * 181.60676 * 12 11 8 14 14 H 1.08001 * 120.00032 * 5.03095 * 13 12 11 15 15 C 1.37874 * 119.99772 * 185.03322 * 13 12 11 16 16 N 1.31516 * 119.99828 * 198.01162 * 15 13 12 17 17 Si 1.86800 * 120.00370 * 18.00757 * 15 13 12 18 18 H 1.48493 * 109.47332 * 94.94430 * 17 15 13 19 19 H 1.48496 * 109.47398 * 214.94822 * 17 15 13 20 20 H 1.48503 * 109.46856 * 334.94295 * 17 15 13 21 21 C 1.52998 * 109.47257 * 56.27677 * 6 5 3 22 22 C 1.52995 * 109.47375 * 179.97438 * 21 6 5 23 23 C 1.52995 * 109.47310 * 299.99767 * 22 21 6 24 24 C 1.53005 * 109.46977 * 59.99818 * 23 22 21 25 25 C 1.53003 * 109.47131 * 300.00023 * 24 23 22 26 26 H 1.08998 * 109.46742 * 60.01884 * 1 2 3 27 27 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47160 * 300.02094 * 1 2 3 29 29 H 1.09002 * 109.47191 * 68.63668 * 5 3 2 30 30 H 1.08996 * 109.47185 * 308.63330 * 5 3 2 31 31 H 1.00893 * 111.00228 * 179.12381 * 7 6 5 32 32 H 1.09009 * 109.46712 * 53.16441 * 10 8 7 33 33 H 1.08993 * 109.46900 * 173.16351 * 10 8 7 34 34 H 1.08993 * 109.47135 * 293.16802 * 10 8 7 35 35 H 1.08999 * 109.47417 * 63.86818 * 11 8 7 36 36 H 1.09004 * 109.47126 * 183.86572 * 11 8 7 37 37 H 1.09000 * 109.47158 * 301.60788 * 12 11 8 38 38 H 1.09001 * 109.47194 * 61.60562 * 12 11 8 39 39 H 0.97003 * 119.99777 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47412 * 59.99621 * 21 6 5 41 41 H 1.09005 * 109.47065 * 300.00133 * 21 6 5 42 42 H 1.09007 * 109.47155 * 179.97438 * 22 21 6 43 43 H 1.09004 * 109.46930 * 60.00113 * 22 21 6 44 44 H 1.08998 * 109.47550 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47407 * 300.00055 * 23 22 21 46 46 H 1.09003 * 109.47272 * 60.00239 * 24 23 22 47 47 H 1.08996 * 109.47095 * 180.02562 * 24 23 22 48 48 H 1.08992 * 109.47022 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.46920 * 300.00235 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4050 2.2085 0.0617 5 6 3.5643 1.2758 -0.0770 6 6 4.0108 2.7207 0.1552 7 7 3.4943 3.5725 -0.9244 8 6 3.9378 3.0850 -2.2374 9 1 4.0440 2.0007 -2.2055 10 6 5.2851 3.7194 -2.5884 11 6 2.9032 3.4652 -3.2985 12 6 1.5343 2.9116 -2.8976 13 6 0.5234 3.2521 -3.9620 14 1 0.8414 3.7358 -4.8738 15 6 -0.8075 2.9461 -3.7719 16 7 -1.6265 2.9067 -4.8001 17 14 -1.4473 2.5874 -2.0539 18 1 -2.0135 3.8286 -1.4674 19 1 -2.5045 1.5472 -2.1265 20 1 -0.3323 2.1013 -1.2020 21 6 3.4668 3.2131 1.4978 22 6 3.9138 4.6577 1.7304 23 6 5.4423 4.7226 1.7448 24 6 5.9864 4.2302 0.4022 25 6 5.5394 2.7855 0.1697 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 3.8956 0.9470 -1.0621 30 1 4.0019 0.6331 0.6868 31 1 3.7638 4.5349 -0.7861 32 1 5.9893 3.5509 -1.7735 33 1 5.6720 3.2682 -3.5021 34 1 5.1538 4.7908 -2.7395 35 1 2.8469 4.5507 -3.3786 36 1 3.1976 3.0447 -4.2601 37 1 1.5977 1.8288 -2.7897 38 1 1.2270 3.3537 -1.9498 39 1 -2.5629 2.6918 -4.6663 40 1 3.8501 2.5811 2.2990 41 1 2.3778 3.1664 1.4877 42 1 3.5259 5.0086 2.6867 43 1 3.5308 5.2899 0.9293 44 1 5.7608 5.7518 1.9101 45 1 5.8253 4.0903 2.5459 46 1 5.6035 4.8625 -0.3989 47 1 7.0753 4.2760 0.4127 48 1 5.9266 2.4349 -0.7869 49 1 5.9223 2.1534 0.9708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:24 Heat of formation + Delta-G solvation = -82.116298 kcal Electronic energy + Delta-G solvation = -27418.022144 eV Core-core repulsion = 23959.370918 eV Total energy + Delta-G solvation = -3458.651226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.209 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80439 -39.23334 -35.90903 -35.80896 -33.21132 -32.35017 -31.01865 -29.99421 -28.75456 -27.76657 -26.52163 -25.04469 -22.83103 -21.90428 -21.11760 -20.29630 -19.72375 -18.54830 -17.23086 -16.55726 -16.25860 -15.99571 -15.92539 -15.02345 -14.76595 -14.69603 -14.08819 -13.63403 -13.39402 -13.22248 -13.00488 -12.79631 -12.55464 -12.33433 -12.28453 -12.08576 -11.94617 -11.89099 -11.71301 -11.57066 -11.25663 -11.16131 -10.91703 -10.66775 -10.65970 -10.38204 -10.23052 -10.01727 -9.94764 -9.81011 -9.48920 -9.28770 -9.03696 -8.89811 -8.05895 -7.79039 -5.88022 -3.78014 2.80598 3.15556 3.46316 3.58183 3.73620 4.39955 4.56829 4.67246 4.69299 4.78271 5.03691 5.11304 5.15204 5.32509 5.34954 5.42389 5.46820 5.48157 5.51364 5.51742 5.52390 5.56267 5.63495 5.65001 5.67206 5.79349 5.91614 5.98574 6.00162 6.04624 6.11437 6.13662 6.24630 6.32530 6.40758 6.42784 6.53747 6.70281 6.82960 6.98403 7.26133 7.54970 7.71187 7.84682 8.00750 8.08030 8.40450 8.75908 9.22953 9.80639 11.24356 Molecular weight = 297.21amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.006516 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.798343 B = 4296.121743 C = 5113.655577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.448 3.552 4 O -0.446 6.446 5 C -0.105 4.105 6 C 0.134 3.866 7 N -0.648 5.648 8 C 0.074 3.926 9 H 0.071 0.929 10 C -0.201 4.201 11 C -0.091 4.091 12 C 0.002 3.998 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.838 3.162 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.202 1.202 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.340 0.660 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.046 0.954 37 H -0.008 1.008 38 H 0.051 0.949 39 H 0.257 0.743 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.828 -2.466 14.897 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.291 6.291 3 C 0.288 3.712 4 O -0.329 6.329 5 C -0.143 4.143 6 C 0.042 3.958 7 N -0.280 5.280 8 C -0.035 4.035 9 H 0.089 0.911 10 C -0.259 4.259 11 C -0.129 4.129 12 C -0.035 4.035 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.665 3.335 18 H -0.213 1.213 19 H -0.227 1.227 20 H -0.125 1.125 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.160 4.160 25 C -0.195 4.195 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.161 0.839 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.792 -2.485 14.846 21.104 hybrid contribution 0.196 0.152 0.545 0.599 sum 14.988 -2.333 15.391 21.609 Atomic orbital electron populations 1.23678 0.76849 1.02965 1.03496 1.86410 1.23082 1.34364 1.85199 1.23276 0.91526 0.81640 0.74732 1.90722 1.65887 1.35357 1.40894 1.21579 0.89391 0.98347 1.04991 1.20616 0.90974 0.91047 0.93170 1.60683 1.62243 1.05214 0.99818 1.21869 0.92712 0.98875 0.90064 0.91140 1.23064 0.99282 1.01461 1.02097 1.21472 0.96245 1.00165 0.94994 1.19454 0.91455 0.94497 0.98085 1.21259 0.91790 1.39402 1.03528 0.92039 1.25002 0.97157 0.94636 0.96568 1.70057 1.04812 1.49554 1.29992 0.87565 0.80003 0.78147 0.87740 1.21259 1.22690 1.12537 1.21822 1.03669 0.95711 0.94332 1.21504 0.94795 0.97521 1.01785 1.21563 0.96315 1.00566 0.97219 1.21633 1.00048 0.96355 0.97977 1.22532 0.97163 0.97351 1.02418 0.90333 0.89104 0.92520 0.87600 0.88684 0.83904 0.91280 0.92748 0.92772 0.93347 0.93549 0.98966 0.93086 0.93314 0.92752 0.88648 0.92318 0.91242 0.92397 0.92372 0.91375 0.92211 0.90506 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.29 101.05 1.04 1.41 16 2 O -0.37 -6.13 10.57 -39.27 -0.41 -6.55 16 3 C 0.45 7.41 7.39 36.00 0.27 7.68 16 4 O -0.45 -8.55 8.76 -18.75 -0.16 -8.71 16 5 C -0.11 -1.34 4.65 -27.88 -0.13 -1.47 16 6 C 0.13 1.62 0.28 -131.60 -0.04 1.58 16 7 N -0.65 -9.54 3.77 -93.04 -0.35 -9.89 16 8 C 0.07 1.14 2.14 -67.71 -0.14 0.99 16 9 H 0.07 1.08 5.21 -51.93 -0.27 0.81 16 10 C -0.20 -2.49 7.75 37.16 0.29 -2.20 16 11 C -0.09 -1.84 4.90 -26.73 -0.13 -1.97 16 12 C 0.00 0.06 3.62 -27.88 -0.10 -0.04 16 13 C -0.52 -15.60 9.57 -34.44 -0.33 -15.93 16 14 H 0.06 1.98 7.99 -52.49 -0.42 1.56 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -29.29 13.96 55.43 0.77 -28.52 16 17 Si 0.84 21.73 25.91 -169.99 -4.41 17.33 16 18 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 19 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 20 H -0.20 -4.74 2.11 56.52 0.12 -4.62 16 21 C -0.12 -1.43 4.55 -26.73 -0.12 -1.55 16 22 C -0.12 -1.28 5.66 -26.74 -0.15 -1.43 16 23 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 24 C -0.12 -1.12 4.72 -26.73 -0.13 -1.25 16 25 C -0.16 -1.51 4.11 -26.73 -0.11 -1.62 16 26 H 0.08 1.49 4.09 -51.93 -0.21 1.28 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 29 H 0.11 1.35 5.71 -51.93 -0.30 1.06 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.34 4.78 4.93 -39.30 -0.19 4.59 16 32 H 0.07 0.72 3.33 -51.92 -0.17 0.55 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H -0.01 -0.20 8.13 -51.93 -0.42 -0.63 16 38 H 0.05 1.28 4.50 -51.93 -0.23 1.05 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 1.44 5.53 -51.93 -0.29 1.15 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.84 6.65 -51.93 -0.35 0.49 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.68 5.22 -51.93 -0.27 0.41 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.75 5.28 -51.93 -0.27 0.48 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -33.45 340.99 -7.78 -41.23 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.31 Total: 5.05 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.04 Total: -15.08 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.42 Total: -38.40 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.58 Total: -15.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.41 Total: 17.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.45 -7.78 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.886 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds