Wall clock time and date at job start Tue Mar 31 2020 07:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47354 * 2 1 4 4 C 1.52992 * 109.47068 * 181.82129 * 3 2 1 5 5 C 1.53002 * 109.47466 * 185.00010 * 4 3 2 6 6 N 1.46905 * 109.46873 * 301.82069 * 3 2 1 7 7 C 1.46893 * 110.99869 * 306.41810 * 6 3 2 8 8 C 1.53000 * 109.47192 * 185.58278 * 7 6 3 9 9 N 1.46507 * 109.47328 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99554 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00544 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99599 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99887 * 180.27696 * 12 10 9 14 14 C 1.53001 * 109.46716 * 175.75096 * 13 12 10 15 15 C 1.50698 * 115.55114 * 65.51031 * 14 13 12 16 16 H 1.08009 * 119.99893 * 264.65583 * 15 14 13 17 17 C 1.37878 * 120.00547 * 84.65417 * 15 14 13 18 18 N 1.31512 * 119.99677 * 1.98388 * 17 15 14 19 19 Si 1.86800 * 120.00193 * 181.98773 * 17 15 14 20 20 H 1.48495 * 109.47094 * 89.99739 * 19 17 15 21 21 H 1.48500 * 109.46869 * 209.99706 * 19 17 15 22 22 H 1.48494 * 109.46952 * 329.99526 * 19 17 15 23 23 C 1.52999 * 117.49879 * 279.83354 * 14 13 12 24 24 C 1.53006 * 117.49661 * 211.17449 * 14 13 12 25 25 H 1.09001 * 109.46769 * 306.13000 * 1 2 3 26 26 H 1.08996 * 109.46738 * 66.12451 * 1 2 3 27 27 H 1.08992 * 109.47433 * 186.12957 * 1 2 3 28 28 H 1.09001 * 109.46863 * 239.99554 * 2 1 3 29 29 H 1.09002 * 109.46538 * 120.00237 * 2 1 3 30 30 H 1.08998 * 109.47314 * 61.81870 * 3 2 1 31 31 H 1.09006 * 109.47226 * 305.00055 * 4 3 2 32 32 H 1.09000 * 109.47491 * 64.99638 * 4 3 2 33 33 H 1.08993 * 109.47769 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46935 * 300.00224 * 5 4 3 35 35 H 1.09000 * 109.47069 * 59.99369 * 5 4 3 36 36 H 1.00895 * 111.00101 * 70.38051 * 6 3 2 37 37 H 1.09009 * 109.47078 * 65.58915 * 7 6 3 38 38 H 1.09002 * 109.47763 * 305.58520 * 7 6 3 39 39 H 1.09009 * 109.46589 * 60.00337 * 8 7 6 40 40 H 1.09000 * 109.47411 * 300.00484 * 8 7 6 41 41 H 0.96996 * 120.00004 * 0.02562 * 9 8 7 42 42 H 0.97000 * 119.99809 * 359.97438 * 12 10 9 43 43 H 1.08996 * 109.46502 * 295.74713 * 13 12 10 44 44 H 1.08994 * 109.47020 * 55.75435 * 13 12 10 45 45 H 0.97001 * 120.00221 * 185.02430 * 18 17 15 46 46 H 1.09000 * 117.50245 * 0.02562 * 23 14 13 47 47 H 1.08998 * 117.49838 * 145.02781 * 23 14 13 48 48 H 1.08999 * 117.49459 * 214.98422 * 24 14 13 49 49 H 1.09002 * 117.49808 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5694 1.4426 -0.0458 5 6 4.0833 2.8783 0.0798 6 7 1.5148 2.1475 -1.1769 7 6 1.8199 1.4116 -2.4110 8 6 1.3825 2.2404 -3.6204 9 7 1.6861 1.5061 -4.8513 10 6 1.3867 2.0461 -6.0493 11 8 0.8651 3.1428 -6.1086 12 7 1.6656 1.3704 -7.1817 13 6 1.3458 1.9600 -8.4841 14 6 1.8562 1.0435 -9.5979 15 6 1.1868 -0.3035 -9.6892 16 1 1.6319 -1.1615 -9.2071 17 6 0.0062 -0.4408 -10.3880 18 7 -0.5154 0.5953 -11.0076 19 14 -0.8525 -2.0984 -10.4546 20 1 -1.8013 -2.2104 -9.3178 21 1 -1.5964 -2.2194 -11.7341 22 1 0.1577 -3.1831 -10.3649 23 6 3.3437 1.1185 -9.9482 24 6 2.3012 1.7014 -10.9057 25 1 -0.3633 0.6059 0.8300 26 1 -0.3633 0.4159 -0.9397 27 1 -0.3634 -1.0217 0.1097 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7037 1.9468 0.9058 31 1 3.9577 0.8443 0.7784 32 1 3.9046 1.0182 -0.9922 33 1 5.1728 2.8784 0.0476 34 1 3.6950 3.4766 -0.7445 35 1 3.7481 3.3027 1.0261 36 1 0.5230 2.3098 -1.0883 37 1 1.2853 0.4616 -2.4091 38 1 2.8923 1.2249 -2.4672 39 1 1.9170 3.1904 -3.6223 40 1 0.3100 2.4270 -3.5643 41 1 2.1026 0.6314 -4.8040 42 1 2.0822 0.4957 -7.1343 43 1 0.2658 2.0756 -8.5751 44 1 1.8242 2.9357 -8.5686 45 1 -1.3814 0.5179 -11.4376 46 1 3.9587 1.8203 -9.3851 47 1 3.8380 0.1935 -10.2452 48 1 2.1100 1.1596 -11.8319 49 1 2.2298 2.7870 -10.9727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894564310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:52 Heat of formation + Delta-G solvation = -25.434391 kcal Electronic energy + Delta-G solvation = -24268.252409 eV Core-core repulsion = 20844.351846 eV Total energy + Delta-G solvation = -3423.900563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.48443 -38.72137 -36.76255 -34.81204 -33.23088 -32.48931 -32.02769 -31.90234 -28.38750 -26.33033 -25.76549 -24.90732 -22.69868 -22.28672 -21.16404 -20.40494 -19.73313 -19.34399 -17.74342 -16.87401 -16.29341 -15.91490 -15.38939 -15.03347 -14.69814 -14.54431 -14.50443 -13.93033 -13.84703 -13.72768 -13.44734 -13.14445 -13.05097 -12.62779 -12.51277 -12.09641 -11.92218 -11.69434 -11.60562 -11.52759 -11.27428 -11.18446 -10.99601 -10.92632 -10.90363 -10.76421 -10.52638 -10.22915 -9.71643 -9.44950 -9.02119 -8.81498 -8.67199 -8.46915 -8.21294 -7.95513 -6.07027 -4.16118 3.13064 3.25936 3.33692 3.34509 3.83228 4.04133 4.35863 4.36630 4.62315 4.70959 4.84791 4.86912 4.99340 5.06023 5.13113 5.17141 5.22218 5.29096 5.35070 5.40046 5.48314 5.62236 5.63751 5.71804 5.79424 5.83527 5.93111 5.99602 6.02135 6.06539 6.19711 6.36999 6.50234 6.62185 6.70188 6.72617 6.82724 6.87891 7.10663 7.13550 7.35375 7.45229 7.46934 7.63648 7.81455 8.35334 8.68560 8.85275 9.23330 9.50945 11.01119 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002869 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.651261 B = 9757.239079 C =10616.437937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.162 4.162 3 C 0.089 3.911 4 C -0.117 4.117 5 C -0.145 4.145 6 N -0.675 5.675 7 C 0.042 3.958 8 C 0.145 3.855 9 N -0.754 5.754 10 C 0.698 3.302 11 O -0.603 6.603 12 N -0.721 5.721 13 C 0.183 3.817 14 C 0.025 3.975 15 C -0.498 4.498 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.211 4.211 24 C -0.143 4.143 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.344 0.656 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.392 0.608 42 H 0.396 0.604 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.261 0.739 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -0.883 21.459 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.201 4.201 3 C -0.022 4.022 4 C -0.155 4.155 5 C -0.202 4.202 6 N -0.307 5.307 7 C -0.088 4.088 8 C 0.019 3.981 9 N -0.412 5.412 10 C 0.398 3.602 11 O -0.482 6.482 12 N -0.374 5.374 13 C 0.059 3.941 14 C 0.025 3.975 15 C -0.536 4.536 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.162 0.838 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.225 0.775 42 H 0.229 0.771 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.879 0.626 21.130 21.942 hybrid contribution -0.893 -2.517 0.014 2.671 sum 4.986 -1.891 21.145 21.807 Atomic orbital electron populations 1.21806 0.95670 1.02070 1.01856 1.22288 0.96394 0.98743 1.02664 1.21667 0.95235 0.91796 0.93453 1.21596 0.94159 0.97997 1.01759 1.21661 0.99783 0.96476 1.02281 1.60413 1.20709 1.48497 1.01045 1.22180 1.01770 0.95410 0.89394 1.20914 1.00576 0.95152 0.81416 1.44978 1.68740 1.22687 1.04756 1.16012 0.79499 0.84292 0.80402 1.90875 1.50031 1.20859 1.86467 1.45149 1.65367 1.21914 1.04924 1.20834 1.00277 0.93579 0.79412 1.19046 0.90282 0.95893 0.92311 1.20355 1.07713 0.92247 1.33290 0.92302 1.24982 0.97426 0.96474 0.94205 1.69992 1.17138 1.29834 1.34086 0.86640 0.79778 0.84407 0.77467 1.20681 1.21223 1.19887 1.23010 0.93776 1.01520 1.06525 1.22480 1.02519 0.97326 0.95836 0.92541 0.92657 0.92530 0.91488 0.91594 0.89965 0.92082 0.91856 0.93544 0.91263 0.93302 0.83757 0.94160 0.90189 0.91177 0.92262 0.77501 0.77082 0.91640 0.94494 0.92885 0.91683 0.90466 0.89617 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.26 37.16 0.34 -0.70 16 2 C -0.16 -1.07 4.92 -26.73 -0.13 -1.20 16 3 C 0.09 0.61 2.61 -67.71 -0.18 0.44 16 4 C -0.12 -0.83 5.34 -26.73 -0.14 -0.98 16 5 C -0.14 -1.11 9.80 37.16 0.36 -0.74 16 6 N -0.68 -5.46 5.63 -106.73 -0.60 -6.06 16 7 C 0.04 0.37 4.70 -3.83 -0.02 0.36 16 8 C 0.14 1.80 5.98 -4.04 -0.02 1.77 16 9 N -0.75 -10.68 5.56 -65.22 -0.36 -11.05 16 10 C 0.70 13.56 8.57 -86.91 -0.74 12.81 16 11 O -0.60 -14.18 16.34 5.29 0.09 -14.10 16 12 N -0.72 -14.23 5.49 -65.23 -0.36 -14.59 16 13 C 0.18 4.22 5.50 -4.04 -0.02 4.20 16 14 C 0.03 0.60 1.43 -155.66 -0.22 0.38 16 15 C -0.50 -12.83 8.62 -34.44 -0.30 -13.13 16 16 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 18 N -0.87 -24.38 12.72 55.43 0.71 -23.67 16 19 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 24 C -0.14 -3.31 9.23 -26.69 -0.25 -3.56 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 6.53 -51.93 -0.34 0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 6.25 -51.93 -0.32 0.16 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.34 2.65 7.65 -39.29 -0.30 2.35 16 37 H 0.04 0.35 5.97 -51.92 -0.31 0.04 16 38 H 0.08 0.71 6.16 -51.93 -0.32 0.39 16 39 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.39 4.45 8.49 -40.82 -0.35 4.11 16 42 H 0.40 7.04 8.36 -40.82 -0.34 6.70 16 43 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 48 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 49 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -30.07 389.87 -10.27 -40.34 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -8.91 Total: 10.90 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.68 Total: -3.19 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.62 Total: -55.37 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.07 -10.27 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894564310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.904 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds