Wall clock time and date at job start Tue Mar 31 2020 07:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 N 1.46905 * 109.46633 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00046 * 66.04683 * 4 3 2 6 6 C 1.46902 * 110.99659 * 189.99559 * 4 3 2 7 7 C 1.50698 * 109.47145 * 169.99537 * 6 4 3 8 8 O 1.21280 * 119.99725 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00194 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00122 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47163 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.70288 * 60.14846 * 11 10 9 13 13 C 1.53621 * 109.66390 * 180.74150 * 11 10 9 14 14 C 1.53039 * 109.24309 * 174.55116 * 13 11 10 15 15 C 1.53042 * 109.53465 * 298.51088 * 14 13 11 16 16 C 1.53193 * 109.31561 * 61.36388 * 15 14 13 17 17 N 1.46926 * 109.58293 * 299.79066 * 11 10 9 18 18 C 1.36929 * 120.63346 * 6.63332 * 17 11 10 19 19 H 1.08007 * 119.99884 * 327.61868 * 18 17 11 20 20 C 1.38813 * 120.00316 * 147.62876 * 18 17 11 21 21 N 1.31625 * 119.99658 * 337.40659 * 20 18 17 22 22 Si 1.86803 * 120.00163 * 157.40887 * 20 18 17 23 23 H 1.48503 * 109.47100 * 269.99717 * 22 20 18 24 24 H 1.48498 * 109.47132 * 30.00036 * 22 20 18 25 25 H 1.48501 * 109.47070 * 149.99897 * 22 20 18 26 26 H 1.08996 * 109.46720 * 60.00687 * 1 2 3 27 27 H 1.09002 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47659 * 300.00211 * 1 2 3 29 29 H 1.08993 * 109.47659 * 239.99789 * 2 1 3 30 30 H 1.08996 * 109.46720 * 119.99313 * 2 1 3 31 31 H 1.08999 * 109.47397 * 59.99928 * 3 2 1 32 32 H 1.08996 * 109.46953 * 299.99170 * 3 2 1 33 33 H 1.09002 * 109.47018 * 183.95391 * 5 4 3 34 34 H 1.09000 * 109.46776 * 303.94658 * 5 4 3 35 35 H 1.09000 * 109.47255 * 63.94848 * 5 4 3 36 36 H 1.09010 * 109.46871 * 50.00126 * 6 4 3 37 37 H 1.08990 * 109.47544 * 290.00466 * 6 4 3 38 38 H 0.97003 * 120.00205 * 0.02562 * 9 7 6 39 39 H 1.09001 * 109.47015 * 60.00214 * 10 9 7 40 40 H 1.09002 * 109.46874 * 299.99800 * 10 9 7 41 41 H 1.09003 * 109.63417 * 54.55557 * 13 11 10 42 42 H 1.09003 * 109.46026 * 294.43450 * 13 11 10 43 43 H 1.09001 * 109.46327 * 178.49369 * 14 13 11 44 44 H 1.09002 * 109.44951 * 58.51968 * 14 13 11 45 45 H 1.09000 * 109.49646 * 301.41118 * 15 14 13 46 46 H 1.09003 * 109.49736 * 181.31773 * 15 14 13 47 47 H 1.09002 * 109.58399 * 185.57599 * 16 15 14 48 48 H 1.08994 * 109.70162 * 65.22143 * 16 15 14 49 49 H 0.96991 * 120.00121 * 354.73361 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0353 2.7932 0.2387 7 6 5.5215 2.7185 0.4768 8 8 6.0866 1.6458 0.4503 9 7 6.2225 3.8437 0.7192 10 6 7.6674 3.7712 0.9501 11 6 8.2153 5.1778 1.1995 12 1 7.7329 5.6100 2.0761 13 6 9.7335 5.1089 1.4238 14 6 10.2917 6.5294 1.5367 15 6 10.0317 7.2864 0.2322 16 6 8.5216 7.3780 -0.0082 17 7 7.9543 6.0231 0.0264 18 6 7.1919 5.5592 -1.0121 19 1 7.2054 4.5092 -1.2650 20 6 6.4018 6.4383 -1.7400 21 7 6.0252 7.5810 -1.2061 22 14 5.8729 5.9996 -3.4770 23 1 6.8839 6.4991 -4.4433 24 1 5.7559 4.5244 -3.6012 25 1 4.5585 6.6266 -3.7675 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1233 0.8323 -1.1973 34 1 3.6304 -0.1147 -1.4042 35 1 3.7452 1.5258 -2.0852 36 1 3.5483 3.2239 1.1138 37 1 3.8377 3.4188 -0.6316 38 1 5.7704 4.7017 0.7408 39 1 8.1541 3.3412 0.0747 40 1 7.8652 3.1451 1.8202 41 1 10.2051 4.5983 0.5842 42 1 9.9402 4.5627 2.3442 43 1 11.3647 6.4843 1.7226 44 1 9.8016 7.0475 2.3610 45 1 10.5005 6.7554 -0.5962 46 1 10.4501 8.2904 0.3047 47 1 8.3334 7.8282 -0.9830 48 1 8.0618 7.9867 0.7703 49 1 6.2347 7.7756 -0.2793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690456607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:06 Heat of formation + Delta-G solvation = -22.723521 kcal Electronic energy + Delta-G solvation = -25723.967347 eV Core-core repulsion = 22300.184336 eV Total energy + Delta-G solvation = -3423.783011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.41950 -38.08328 -36.95960 -34.14870 -33.35571 -33.10126 -30.93912 -29.77228 -28.18499 -26.89959 -25.78686 -24.63034 -22.91426 -22.09450 -20.92224 -20.61756 -19.69772 -19.11354 -17.33184 -16.38241 -15.81135 -15.68018 -15.37760 -14.95660 -14.46067 -14.20462 -14.02060 -13.73662 -13.64667 -13.56361 -13.30635 -13.04113 -12.56789 -12.42957 -12.18558 -12.06255 -11.86851 -11.64016 -11.54421 -11.45129 -11.13537 -11.08048 -11.03252 -10.76805 -10.57873 -10.42584 -10.26801 -10.16453 -10.01891 -9.75665 -9.28962 -9.07558 -8.51851 -8.21759 -8.07629 -6.92134 -6.10152 -3.35890 3.28612 3.42686 3.44546 3.59807 3.62390 4.31869 4.48285 4.87050 4.99960 5.05818 5.19941 5.30016 5.35753 5.41796 5.43379 5.49793 5.53242 5.56032 5.61101 5.66277 5.68146 5.82650 5.84188 5.85386 5.92375 5.96645 6.05277 6.10088 6.20089 6.22094 6.25443 6.30165 6.40131 6.48710 6.52086 6.58089 6.68231 6.84937 7.06016 7.08765 7.15278 7.22204 7.24948 8.02149 8.32123 8.51820 8.95812 9.02064 9.75164 10.22170 11.13876 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.004404 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.603879 B = 6355.847263 C = 7468.199184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.053 3.947 4 N -0.524 5.524 5 C 0.017 3.983 6 C 0.035 3.965 7 C 0.511 3.489 8 O -0.549 6.549 9 N -0.694 5.694 10 C 0.141 3.859 11 C 0.161 3.839 12 H 0.030 0.970 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.138 4.138 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.343 4.343 19 H 0.061 0.939 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 1.058 2.942 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.290 1.290 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.017 0.983 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -7.255 4.197 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.248 5.248 5 C -0.131 4.131 6 C -0.096 4.096 7 C 0.296 3.704 8 O -0.428 6.428 9 N -0.345 5.345 10 C 0.016 3.984 11 C 0.055 3.945 12 H 0.047 0.953 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.177 4.177 16 C 0.027 3.973 17 N -0.321 5.321 18 C -0.472 4.472 19 H 0.079 0.921 20 C -0.222 4.222 21 N -0.556 5.556 22 Si 0.888 3.112 23 H -0.220 1.220 24 H -0.219 1.219 25 H -0.216 1.216 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.248 0.752 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.035 0.965 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.065 -7.760 3.202 9.327 hybrid contribution 0.428 0.518 0.575 0.884 sum -3.638 -7.241 3.777 8.941 Atomic orbital electron populations 1.21739 0.95798 1.01556 1.01737 1.21527 0.95049 0.96478 1.02782 1.22204 0.87260 0.97265 1.00764 1.61684 1.06616 1.20398 1.36097 1.22597 1.03149 0.98885 0.88472 1.21960 0.93935 0.90937 1.02734 1.20271 0.88823 0.84192 0.77141 1.90590 1.71563 1.28702 1.51975 1.45925 1.08672 1.09614 1.70327 1.21170 0.80738 0.96520 0.99947 1.20817 0.92653 0.90308 0.90754 0.95271 1.22006 0.97510 0.96660 1.00525 1.21361 0.98973 0.96132 0.98051 1.22068 1.00085 0.98512 0.97070 1.20928 0.89072 0.86917 1.00347 1.44170 1.58399 1.12507 1.16995 1.19999 1.21701 0.96054 1.09484 0.92136 1.25753 0.95119 0.96230 1.05059 1.70759 1.43088 1.25917 1.15795 0.83601 0.76493 0.74859 0.76229 1.21969 1.21920 1.21631 0.92901 0.92686 0.92702 0.91917 0.91132 0.90900 0.94886 0.89170 0.91648 0.96196 0.88476 0.91623 0.75164 0.91805 0.92881 0.92007 0.92941 0.93432 0.92884 0.92475 0.93341 0.90711 0.96538 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.28 5.86 -26.73 -0.16 -1.44 16 3 C 0.05 0.65 4.96 -3.82 -0.02 0.63 16 4 N -0.52 -8.05 4.50 -244.36 -1.10 -9.15 16 5 C 0.02 0.26 9.01 60.06 0.54 0.80 16 6 C 0.04 0.57 5.45 -4.98 -0.03 0.54 16 7 C 0.51 9.77 7.55 -10.99 -0.08 9.69 16 8 O -0.55 -11.92 14.31 5.56 0.08 -11.84 16 9 N -0.69 -13.37 3.86 -60.29 -0.23 -13.60 16 10 C 0.14 2.69 4.44 -4.04 -0.02 2.68 16 11 C 0.16 3.09 3.03 -67.37 -0.20 2.88 16 12 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 13 C -0.13 -2.13 5.40 -26.39 -0.14 -2.27 16 14 C -0.11 -1.72 5.88 -26.69 -0.16 -1.88 16 15 C -0.14 -2.49 6.08 -26.61 -0.16 -2.65 16 16 C 0.15 3.32 4.70 -3.71 -0.02 3.30 16 17 N -0.60 -13.30 2.78 -164.52 -0.46 -13.76 16 18 C -0.34 -8.47 6.82 -15.06 -0.10 -8.57 16 19 H 0.06 1.58 5.99 -52.48 -0.31 1.26 16 20 C -0.02 -0.48 4.72 -17.43 -0.08 -0.56 16 21 N -0.92 -25.09 12.56 55.49 0.70 -24.40 16 22 Si 1.06 24.30 29.98 -169.99 -5.10 19.20 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.68 6.47 -51.93 -0.34 0.34 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 32 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.09 1.64 5.88 -51.93 -0.31 1.33 16 34 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 1.36 7.93 -51.92 -0.41 0.95 16 37 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 38 H 0.41 8.21 7.39 -40.82 -0.30 7.91 16 39 H 0.06 1.36 7.42 -51.93 -0.39 0.98 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.84 6.56 -51.93 -0.34 1.50 16 48 H 0.02 0.37 7.81 -51.93 -0.41 -0.04 16 49 H 0.27 7.40 6.66 -40.82 -0.27 7.13 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -28.18 371.55 -9.72 -37.90 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.95 Total: 7.84 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.26 Total: 2.22 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -1.09 Total: -60.91 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.10 Total: 19.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.18 -9.72 -37.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690456607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds