Wall clock time and date at job start Tue Mar 31 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47233 * 2 1 4 4 N 1.46907 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.47443 * 110.99790 * 69.15509 * 4 3 2 6 6 C 1.54321 * 107.23278 * 123.26116 * 5 4 3 7 7 C 1.55258 * 103.08185 * 22.20449 * 6 5 4 8 8 C 1.47835 * 111.00015 * 190.00131 * 4 3 2 9 9 H 1.09004 * 110.37745 * 332.57452 * 8 4 3 10 10 C 1.50699 * 110.37908 * 94.81015 * 8 4 3 11 11 O 1.21279 * 119.99734 * 358.44153 * 10 8 4 12 12 N 1.34773 * 120.00658 * 178.44897 * 10 8 4 13 13 C 1.46490 * 120.00384 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47559 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.46613 * 54.99525 * 14 13 12 16 16 C 1.53001 * 109.47108 * 295.00069 * 14 13 12 17 17 C 1.52996 * 109.47530 * 174.99686 * 14 13 12 18 18 N 1.46498 * 109.47059 * 184.99929 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47571 * 300.00329 * 1 2 3 29 29 H 1.09000 * 109.47183 * 60.00057 * 1 2 3 30 30 H 1.09000 * 109.47572 * 239.99161 * 2 1 3 31 31 H 1.09009 * 109.46944 * 120.00012 * 2 1 3 32 32 H 1.08998 * 109.47224 * 59.99851 * 3 2 1 33 33 H 1.08997 * 109.47082 * 299.99560 * 3 2 1 34 34 H 1.09007 * 109.88561 * 242.66608 * 5 4 3 35 35 H 1.09000 * 109.88814 * 3.85176 * 5 4 3 36 36 H 1.08998 * 110.70350 * 140.66377 * 6 5 4 37 37 H 1.08999 * 110.70406 * 263.90150 * 6 5 4 38 38 H 1.09008 * 111.08377 * 206.38678 * 7 6 5 39 39 H 1.08994 * 110.95109 * 82.53238 * 7 6 5 40 40 H 0.97002 * 119.99300 * 359.97438 * 12 10 8 41 41 H 1.08998 * 109.47374 * 59.99359 * 13 12 10 42 42 H 1.09002 * 109.47263 * 299.99603 * 13 12 10 43 43 H 1.09001 * 109.47309 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.46988 * 299.99895 * 16 14 13 45 45 H 1.09001 * 109.46786 * 59.99727 * 16 14 13 46 46 H 1.09004 * 109.47066 * 65.00196 * 17 14 13 47 47 H 1.08994 * 109.46974 * 305.00344 * 17 14 13 48 48 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 49 49 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0379 0.9525 -1.2855 6 6 4.9567 2.0554 -1.8520 7 6 5.3447 2.8722 -0.5899 8 6 4.0387 2.8017 0.2403 9 1 3.3281 3.5525 -0.1056 10 6 4.3368 2.9981 1.7044 11 8 4.1059 2.1078 2.4950 12 7 4.8596 4.1631 2.1354 13 6 5.1488 4.3542 3.5588 14 6 5.7319 5.7517 3.7777 15 1 5.0506 6.4978 3.3685 16 6 7.0855 5.8558 3.0722 17 6 5.9176 5.9979 5.2763 18 7 6.3627 7.3767 5.4931 19 6 6.5906 7.8306 6.7649 20 1 6.4464 7.1707 7.6077 21 6 7.0069 9.1387 6.9708 22 7 7.1820 9.9429 5.9437 23 14 7.3184 9.7576 8.7055 24 1 7.0515 8.6658 9.6760 25 1 8.7324 10.1942 8.8289 26 1 6.4194 10.9047 8.9907 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 4.6102 0.0384 -1.1270 35 1 3.2163 0.7631 -1.9763 36 1 5.8410 1.6193 -2.3165 37 1 4.4155 2.6806 -2.5622 38 1 5.5874 3.9028 -0.8491 39 1 6.1709 2.3998 -0.0588 40 1 5.0445 4.8751 1.5031 41 1 5.8691 3.6048 3.8870 42 1 4.2286 4.2500 4.1337 43 1 7.5008 6.8515 3.2278 44 1 7.7667 5.1097 3.4812 45 1 6.9532 5.6804 2.0045 46 1 6.6659 5.3087 5.6677 47 1 4.9705 5.8366 5.7910 48 1 6.4919 7.9694 4.7362 49 1 7.4733 10.8569 6.0876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:18 Heat of formation + Delta-G solvation = -38.657641 kcal Electronic energy + Delta-G solvation = -24287.551444 eV Core-core repulsion = 20863.077478 eV Total energy + Delta-G solvation = -3424.473966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36271 -38.47288 -36.65911 -34.82494 -34.26698 -32.47500 -31.03270 -30.33007 -29.50108 -26.45578 -25.81872 -25.25510 -23.00448 -22.28767 -21.96413 -20.54457 -20.32726 -19.55525 -17.57664 -16.97814 -16.64209 -15.84870 -15.70287 -15.10981 -14.87167 -14.64833 -14.30907 -14.14840 -13.74330 -13.42610 -13.39053 -13.16247 -13.05016 -12.95662 -12.58147 -12.32962 -12.10089 -12.04508 -11.92661 -11.59495 -11.55179 -11.15357 -11.11904 -11.05057 -10.90717 -10.87515 -10.68681 -10.54404 -10.38854 -10.02172 -9.74718 -9.61251 -8.93568 -8.87410 -8.55967 -6.91454 -5.76807 -3.04939 2.71352 3.00441 3.43874 3.49866 3.51979 3.77384 4.20223 4.28024 4.54400 4.60011 4.71870 4.77660 4.83719 4.85888 5.08081 5.09650 5.12411 5.17883 5.25496 5.34395 5.39239 5.41250 5.46492 5.47013 5.50665 5.58572 5.63849 5.76179 5.83066 5.84753 5.94421 5.99303 6.03333 6.04225 6.13218 6.27081 6.41345 6.53710 6.61881 6.67074 6.78485 6.79114 6.88902 7.59424 7.71733 8.34505 8.42546 9.53821 10.11320 10.46123 11.46325 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.002367 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.640611 B =11827.042372 C =12456.286836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.507 5.507 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.119 4.119 8 C 0.053 3.947 9 H 0.079 0.921 10 C 0.518 3.482 11 O -0.520 6.520 12 N -0.728 5.728 13 C 0.129 3.871 14 C -0.110 4.110 15 H 0.075 0.925 16 C -0.140 4.140 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.022 0.978 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -17.281 -19.880 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.231 5.231 5 C -0.085 4.085 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.059 4.059 9 H 0.096 0.904 10 C 0.302 3.698 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.005 3.995 14 C -0.129 4.129 15 H 0.094 0.906 16 C -0.198 4.198 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.430 -18.287 -18.692 27.475 hybrid contribution 0.017 1.592 -0.224 1.608 sum -8.413 -16.694 -18.916 26.595 Atomic orbital electron populations 1.21739 0.95667 1.01759 1.01747 1.21490 0.95228 0.96111 1.02775 1.22322 0.86694 0.97721 1.00591 1.63074 1.07928 1.20480 1.31625 1.22886 0.97944 0.98519 0.89110 1.22817 1.00257 0.97520 0.97379 1.22711 0.96275 1.01335 0.95417 1.22487 0.97836 0.92040 0.93493 0.90361 1.20294 0.77542 0.82058 0.89927 1.90697 1.51030 1.41488 1.56174 1.46054 1.65404 1.16573 1.10069 1.21372 1.00440 0.97273 0.80403 1.21546 0.97587 0.95074 0.98694 0.90636 1.21781 0.96534 1.03235 0.98238 1.20578 0.96998 0.88491 0.90731 1.42353 1.81190 1.07759 1.06256 1.19292 1.37398 0.95033 0.85066 0.91098 1.24740 1.02570 0.96549 0.97301 1.69669 1.53650 1.06500 1.28551 0.86104 0.77444 0.78538 0.84055 1.20537 1.21894 1.21897 0.92520 0.92544 0.93025 0.92226 0.90794 0.90724 0.94924 0.90236 0.92349 0.90226 0.91210 0.89841 0.89885 0.76829 0.91460 0.91548 0.91225 0.92832 0.93936 0.95981 0.96151 0.78227 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.99 5.95 -26.73 -0.16 -1.15 16 3 C 0.05 0.51 4.53 -3.82 -0.02 0.49 16 4 N -0.51 -5.22 4.34 -224.75 -0.98 -6.20 16 5 C 0.04 0.33 6.20 -2.83 -0.02 0.32 16 6 C -0.14 -0.90 6.94 -24.84 -0.17 -1.07 16 7 C -0.12 -0.90 6.46 -24.53 -0.16 -1.06 16 8 C 0.05 0.52 2.80 -67.34 -0.19 0.33 16 9 H 0.08 0.66 7.81 -51.93 -0.41 0.25 16 10 C 0.52 6.76 7.20 -10.99 -0.08 6.68 16 11 O -0.52 -9.04 16.49 5.56 0.09 -8.95 16 12 N -0.73 -8.56 5.24 -60.30 -0.32 -8.88 16 13 C 0.13 1.81 5.06 -4.05 -0.02 1.79 16 14 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 15 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 16 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 17 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 18 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.45 7.09 -51.93 -0.37 0.08 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.03 0.26 7.98 -51.93 -0.41 -0.15 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.39 6.88 -51.93 -0.36 0.03 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.40 3.73 7.66 -40.82 -0.31 3.42 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -33.01 387.84 -9.76 -42.78 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -9.19 Total: 6.21 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.60 Total: -2.19 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.89 Total: -61.21 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.01 -9.76 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.120 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds